Experiment set7IT058 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4945.1 -4.5 -1.8 FIG01210349: hypothetical protein compare
Xcc-8004.1790.1 -3.7 -5.7 Zinc uptake regulation protein ZUR compare
Xcc-8004.1241.1 -3.2 -6.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4039.1 -3.2 -3.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1568.1 -3.1 -3.0 Glycine cleavage system H protein compare
Xcc-8004.2217.1 -2.7 -3.7 FIG01209779: hypothetical protein compare
Xcc-8004.4824.1 -2.6 -10.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2406.1 -2.6 -9.2 Manganese transport protein MntH compare
Xcc-8004.3346.1 -2.6 -3.0 hypothetical protein compare
Xcc-8004.3322.1 -2.5 -2.4 FIG01211446: hypothetical protein compare
Xcc-8004.1372.1 -2.4 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4510.1 -2.3 -2.0 ATP binding component of ABC-transporter compare
Xcc-8004.4200.1 -2.3 -3.1 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3536.1 -2.2 -7.6 FIG01210913: hypothetical protein compare
Xcc-8004.3395.1 -2.1 -3.2 Transcriptional regulator, GntR family compare
Xcc-8004.4112.1 -2.1 -3.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2337.1 -2.0 -5.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.623.1 -2.0 -2.4 Phosphoserine phosphatase compare
Xcc-8004.4481.1 -2.0 -7.9 hypothetical protein compare
Xcc-8004.271.1 -2.0 -3.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1727.1 -2.0 -2.5 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.3723.1 -2.0 -2.9 hypothetical protein compare
Xcc-8004.914.1 -1.9 -7.3 tail-specific protease compare
Xcc-8004.4620.1 -1.9 -6.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3324.1 -1.8 -3.7 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3731.1 -1.7 -2.4 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.2011.1 -1.7 -2.7 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3855.1 -1.6 -6.6 FIG01209965: hypothetical protein compare
Xcc-8004.5407.1 -1.6 -1.7 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.4283.1 -1.6 -1.4 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.1236.1 -1.6 -4.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3498.1 -1.6 -1.2 hypothetical protein compare
Xcc-8004.1196.1 -1.6 -6.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.3310.1 -1.6 -3.9 Chromosome partition protein smc compare
Xcc-8004.1437.1 -1.5 -4.7 Kup system potassium uptake protein compare
Xcc-8004.2559.1 -1.5 -2.6 hypothetical protein compare
Xcc-8004.1336.1 -1.5 -3.9 two-component system sensor protein compare
Xcc-8004.2169.1 -1.5 -3.0 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1615.1 -1.5 -1.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1361.1 -1.5 -1.5 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.1914.1 -1.5 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2672.1 -1.5 -1.6 hypothetical protein compare
Xcc-8004.1137.1 -1.4 -1.4 FIG006231: RNA-binding protein compare
Xcc-8004.5125.1 -1.4 -3.6 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.1871.1 -1.4 -4.3 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3663.1 -1.4 -2.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4529.1 -1.4 -1.4 FIG01210979: hypothetical protein compare
Xcc-8004.2343.1 -1.4 -1.8 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.5224.1 -1.4 -2.3 bleomycin resistance protein compare
Xcc-8004.3222.1 -1.3 -2.2 Mobile element protein compare
Xcc-8004.4286.1 -1.3 -5.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.288.1 -1.3 -1.5 Ferredoxin compare
Xcc-8004.3433.1 -1.3 -4.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.4430.1 -1.3 -2.0 General secretion pathway protein G compare
Xcc-8004.3873.1 -1.3 -2.6 FIG01212144: hypothetical protein compare
Xcc-8004.659.1 -1.3 -2.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.601.1 -1.3 -4.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.213.1 -1.3 -10.0 Putative OMR family iron-siderophore receptor precursor compare
Xcc-8004.3230.1 -1.3 -2.5 Phage DNA invertase compare
Xcc-8004.3721.1 -1.3 -1.5 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.127.1 -1.3 -1.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4170.1 -1.3 -1.5 LSU ribosomal protein L25p compare
Xcc-8004.3898.1 -1.2 -1.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.4596.1 -1.2 -5.9 hypothetical protein compare
Xcc-8004.5363.1 -1.2 -2.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4322.1 -1.2 -1.7 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.3054.1 -1.2 -1.2 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.787.1 -1.2 -1.1 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.5133.1 -1.2 -1.7 FIG01212313: hypothetical protein compare
Xcc-8004.1200.1 -1.2 -1.4 hypothetical protein compare
Xcc-8004.2079.1 -1.2 -2.6 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.2387.1 -1.1 -1.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.1434.1 -1.1 -1.6 FIG000859: hypothetical protein YebC compare
Xcc-8004.657.1 -1.1 -3.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.837.1 -1.1 -1.8 FIG01210690: hypothetical protein compare
Xcc-8004.1616.1 -1.1 -1.4 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.234.1 -1.1 -6.5 cardiolipin synthase compare
Xcc-8004.4669.1 -1.1 -6.2 Transcriptional regulator NtrC family compare
Xcc-8004.4313.1 -1.1 -2.4 hypothetical protein compare
Xcc-8004.957.1 -1.1 -3.3 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.2699.1 -1.1 -5.1 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.5252.1 -1.1 -4.3 FIG01210658: hypothetical protein compare
Xcc-8004.622.1 -1.1 -3.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.4439.1 -1.1 -6.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.585.1 -1.1 -1.4 Na(+) H(+) antiporter subunit F compare
Xcc-8004.1677.1 -1.0 -2.9 FIG01209993: hypothetical protein compare
Xcc-8004.2921.1 -1.0 -1.8 ferrous iron transport protein compare
Xcc-8004.1436.1 -1.0 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.2711.1 -1.0 -1.5 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.53.1 -1.0 -2.8 hypothetical protein compare
Xcc-8004.2497.1 -1.0 -0.8 Mobile element protein compare
Xcc-8004.5122.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.4225.1 -1.0 -1.3 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.3087.1 -1.0 -2.8 FIG01211583: hypothetical protein compare
Xcc-8004.3376.1 -1.0 -2.7 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.1961.1 -1.0 -1.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.1172.1 -1.0 -2.1 Transcriptional regulator compare
Xcc-8004.1409.1 -0.9 -2.5 Cation:proton antiporter compare
Xcc-8004.997.1 -0.9 -1.7 Possible GRAM domain compare
Xcc-8004.2561.1 -0.9 -4.8 FIG01213638: hypothetical protein compare
Xcc-8004.4457.1 -0.9 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4231.1 -0.9 -1.0 two-component system regulatory protein compare
Xcc-8004.1764.1 -0.9 -2.8 FIG01209971: hypothetical protein compare
Xcc-8004.3852.1 -0.9 -2.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.456.1 -0.9 -1.1 carbonic anhydrase, family 3 compare
Xcc-8004.2199.1 -0.9 -1.7 Hemerythrin-like protein PA1673 compare
Xcc-8004.2346.1 -0.9 -1.4 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.5202.1 -0.9 -2.5 Twin-arginine translocation protein TatC compare
Xcc-8004.2949.1 -0.9 -1.5 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.2415.1 -0.9 -4.7 FIG137360: hypothetical protein compare
Xcc-8004.3394.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.5185.1 -0.9 -2.0 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.4810.1 -0.9 -5.2 hypothetical protein compare
Xcc-8004.2357.1 -0.8 -1.9 Segregation and condensation protein B compare
Xcc-8004.251.1 -0.8 -2.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.4373.1 -0.8 -1.8 LppC putative lipoprotein compare
Xcc-8004.1891.1 -0.8 -1.6 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.1763.1 -0.8 -1.4 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2989.1 -0.8 -2.8 hypothetical protein compare
Xcc-8004.1720.1 -0.8 -1.7 UPF0301 protein YqgE compare
Xcc-8004.3049.1 -0.8 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.328.1 -0.8 -2.7 FIG024006: iron uptake protein compare
Xcc-8004.4752.1 -0.8 -1.5 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1676.1 -0.8 -3.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4498.1 -0.8 -2.4 Mobile element protein compare
Xcc-8004.4480.1 -0.8 -4.6 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.2358.1 -0.8 -3.5 Segregation and condensation protein A compare
Xcc-8004.3296.1 -0.8 -2.5 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.385.1 -0.8 -1.5 FIG01212287: hypothetical protein compare
Xcc-8004.4731.1 -0.8 -2.2 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Xcc-8004.1334.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.4427.1 -0.8 -1.6 General secretion pathway protein J compare
Xcc-8004.5368.1 -0.8 -1.9 FIG01210868: hypothetical protein compare
Xcc-8004.4538.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.2372.1 -0.8 -2.6 Pheromone shutdown protein compare
Xcc-8004.4836.1 -0.8 -3.2 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.2110.1 -0.8 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3451.1 -0.8 -1.9 hypothetical protein compare
Xcc-8004.326.1 -0.8 -5.9 FIG138928: iron-regulated membrane protein compare
Xcc-8004.1788.1 -0.8 -2.7 FIG01210179: hypothetical protein compare
Xcc-8004.1162.1 -0.8 -1.8 FIG01210644: hypothetical protein compare
Xcc-8004.4250.1 -0.8 -1.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.713.1 -0.8 -0.7 FIG01210186: hypothetical protein compare
Xcc-8004.270.1 -0.7 -3.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3834.1 -0.7 -2.8 Pathogenicity-related protein compare
Xcc-8004.337.1 -0.7 -1.7 ATPase, AFG1 family compare
Xcc-8004.833.1 -0.7 -3.9 Putative salt-induced outer membrane protein compare
Xcc-8004.1362.1 -0.7 -2.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.4776.1 -0.7 -1.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.1919.1 -0.7 -2.8 FIG056164: rhomboid family serine protease compare
Xcc-8004.826.1 -0.7 -5.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.130.1 -0.7 -3.4 hypothetical protein compare
Xcc-8004.1380.1 -0.7 -1.1 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.782.1 -0.7 -1.9 hypothetical protein compare
Xcc-8004.2420.1 -0.7 -2.9 PHA synthase subunit compare
Xcc-8004.5114.1 -0.7 -3.3 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.2074.1 -0.7 -2.1 Transcriptional regulator, MerR family compare
Xcc-8004.3703.1 -0.7 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3955.1 -0.7 -2.2 HflK protein compare
Xcc-8004.2335.1 -0.7 -2.4 Transport ATP-binding protein CydC compare
Xcc-8004.461.1 -0.7 -1.5 Transcriptional regulator, MarR family compare
Xcc-8004.1768.1 -0.7 -0.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.5087.1 -0.7 -1.4 FIG027190: Putative transmembrane protein compare
Xcc-8004.1499.1 -0.7 -3.1 ADP-ribosylglycohydrolase family protein compare
Xcc-8004.3426.1 -0.7 -3.1 Chaperone protein DnaJ compare
Xcc-8004.4653.1 -0.7 -4.5 amino acid transporter compare
Xcc-8004.2652.1 -0.7 -1.1 response regulator compare
Xcc-8004.2319.1 -0.7 -2.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1007.1 -0.7 -0.9 acetylxylan esterase compare
Xcc-8004.2155.1 -0.7 -2.4 FIG01212077: hypothetical protein compare
Xcc-8004.1658.1 -0.7 -2.4 hypothetical protein compare
Xcc-8004.2089.1 -0.6 -2.8 Xanthan biosynthesis glucuronosyltransferase GumK compare
Xcc-8004.2957.1 -0.6 -3.5 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2324.1 -0.6 -1.9 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Xcc-8004.3212.1 -0.6 -2.2 phage-related integrase compare
Xcc-8004.5365.1 -0.6 -3.1 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.3982.1 -0.6 -2.7 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.1328.1 -0.6 -1.4 FIG01210090: hypothetical protein compare
Xcc-8004.1511.1 -0.6 -1.2 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.574.1 -0.6 -3.2 Di-/tripeptide transporter compare
Xcc-8004.3339.1 -0.6 -2.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3342.1 -0.6 -3.1 Negative regulator of beta-lactamase expression compare
Xcc-8004.1955.1 -0.6 -2.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.645.1 -0.6 -0.9 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.3903.1 -0.6 -1.7 Mlr6856 protein compare
Xcc-8004.2321.1 -0.6 -2.3 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.2635.1 -0.6 -1.9 phage-related protein compare
Xcc-8004.800.1 -0.6 -2.7 Endoglucanase (EC 3.2.1.4) compare
Xcc-8004.4092.1 -0.6 -3.5 FIG01209901: hypothetical protein compare
Xcc-8004.4168.1 -0.6 -1.4 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.1465.1 -0.6 -2.5 Transporter, LysE family compare
Xcc-8004.5039.1 -0.6 -1.6 FIG032621: Hydrolase, alpha/beta hydrolase fold family compare
Xcc-8004.2153.1 -0.6 -2.9 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
Xcc-8004.4908.1 -0.6 -1.1 hypothetical protein compare
Xcc-8004.1779.1 -0.6 -2.0 Two-component response regulator CreB compare
Xcc-8004.736.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.2314.1 -0.6 -3.4 FIG01209975: hypothetical protein compare
Xcc-8004.4558.1 -0.6 -0.9 ABC transporter permease compare
Xcc-8004.2421.1 -0.6 -4.5 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.1954.1 -0.6 -1.8 putative; ORF located using Glimmer/Genemark compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms