Experiment set7IT058 for Methanococcus maripaludis S2

Compare to:

N2 fixation, H2 media

200 most important genes:

  gene name fitness t score description  
MMP_RS08715 -5.1 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04450 -4.6 -17.3 P-II family nitrogen regulator compare
MMP_RS04445 -4.5 -8.8 P-II family nitrogen regulator compare
MMP_RS02680 -4.5 -6.7 ABC transporter permease compare
MMP_RS02145 -4.4 -12.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS04460 -4.3 -22.5 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04455 -4.3 -22.9 nitrogenase subunit alpha compare
MMP_RS04440 -4.2 -12.3 nitrogenase iron protein compare
MMP_RS02355 -4.2 -3.1 30S ribosomal protein S27ae compare
MMP_RS04465 -4.1 -18.0 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS02010 -4.1 -11.3 PHP domain-containing protein compare
MMP_RS01385 -4.1 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01005 -4.0 -1.2 riboflavin synthase compare
MMP_RS01020 -4.0 -1.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS02730 -4.0 -11.5 ModD protein compare
MMP_RS02685 -4.0 -12.7 molybdate ABC transporter substrate-binding protein compare
MMP_RS04470 -4.0 -17.5 nitrogenase compare
MMP_RS00555 -3.9 -9.1 MFS transporter compare
MMP_RS07345 -3.9 -7.9 glycine synthesis protein GlyXL (from data) compare
MMP_RS08720 -3.9 -1.7 4Fe-4S binding protein compare
MMP_RS02670 -3.9 -15.2 ATP-binding cassette domain-containing protein compare
MMP_RS01500 -3.8 -2.4 CBS domain-containing protein compare
MMP_RS02900 -3.8 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS03445 -3.8 -0.9 methanogenesis marker 17 protein compare
MMP_RS07525 -3.8 -10.7 4Fe-4S binding protein compare
MMP_RS02675 -3.7 -3.4 hypothetical protein compare
MMP_RS00750 -3.7 -2.6 fumarate hydratase compare
MMP_RS04710 -3.7 -1.9 hypothetical protein compare
MMP_RS08210 -3.6 -2.5 phosphatidylglycerophosphatase A compare
MMP_RS05550 -3.6 -0.7 cation:proton antiporter compare
MMP_RS06475 -3.5 -5.6 FAD-dependent oxidoreductase compare
MMP_RS07635 -3.5 -9.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07185 -3.5 -13.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS08165 -3.5 -2.2 phosphoglycerate dehydrogenase compare
MMP_RS01175 -3.5 -4.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06285 -3.4 -2.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS04685 -3.4 -3.1 DUF126 domain-containing protein compare
MMP_RS06725 -3.4 -12.0 hypothetical protein compare
MMP_RS07075 -3.4 -4.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS01830 -3.4 -1.4 tRNA-Val compare
MMP_RS05500 -3.4 -9.4 2-isopropylmalate synthase compare
MMP_RS05250 -3.4 -1.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00455 -3.3 -7.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS06670 -3.3 -8.0 glucose-6-phosphate isomerase compare
MMP_RS08785 -3.3 -0.9 RNA-protein complex protein Nop10 compare
MMP_RS02175 -3.3 -0.8 DUF1611 domain-containing protein compare
MMP_RS03600 -3.3 -2.1 triose-phosphate isomerase compare
MMP_RS00735 -3.3 -2.4 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06270 -3.3 -7.4 TIGR00300 family protein compare
MMP_RS06375 -3.3 -5.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02245 -3.2 -3.9 hypothetical protein compare
MMP_RS01455 -3.2 -5.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03315 -3.2 -1.3 ferrous iron transport protein A compare
MMP_RS03450 -3.2 -2.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS02240 -3.2 -4.2 methanogenesis marker 7 protein compare
MMP_RS07365 -3.1 -14.0 2-phosphoglycerate kinase compare
MMP_RS06315 -3.1 -0.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00310 -3.1 -10.9 CBS domain-containing protein compare
MMP_RS01380 -3.1 -5.3 PHP domain-containing protein compare
MMP_RS03035 -3.1 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS03435 -3.1 -1.6 ketol-acid reductoisomerase compare
MMP_RS08860 -3.0 -6.5 MinD/ParA family protein compare
MMP_RS03700 -3.0 -8.9 sodium:proton antiporter compare
MMP_RS02800 -3.0 -9.8 nucleotidyltransferase domain-containing protein compare
MMP_RS08940 -2.9 -1.3 MetS family NSS transporter small subunit compare
MMP_RS09020 -2.9 -1.6 hypothetical protein compare
MMP_RS01900 -2.9 -15.7 hypothetical protein compare
MMP_RS01800 -2.9 -4.1 TIGR00303 family protein compare
MMP_RS07355 -2.9 -0.9 transcription factor S compare
MMP_RS00040 -2.8 -5.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS03110 -2.8 -6.4 glycosyltransferase family 2 protein compare
MMP_RS01325 -2.8 -1.7 dihydroneopterin aldolase family protein compare
MMP_RS07735 -2.8 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01795 -2.8 -1.4 methanogenesis marker 6 protein compare
MMP_RS01610 -2.8 -2.9 hypothetical protein compare
MMP_RS07605 -2.7 -2.6 diadenylate cyclase compare
MMP_RS05930 -2.7 -2.3 3-isopropylmalate dehydratase large subunit compare
MMP_RS04890 -2.7 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08790 -2.7 -2.3 translation initiation factor IF-2 subunit alpha compare
MMP_RS07730 -2.7 -1.9 pyruvate synthase subunit beta compare
MMP_RS07380 -2.7 -2.3 transcription elongation factor Spt5 compare
MMP_RS04870 -2.7 -5.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS00915 -2.6 -5.9 DUF116 domain-containing protein compare
MMP_RS08300 -2.6 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS01775 -2.6 -1.4 TIGR00297 family protein compare
MMP_RS01085 -2.6 -1.9 hypothetical protein compare
MMP_RS08650 -2.6 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07445 -2.6 -6.4 helix-turn-helix domain-containing protein compare
MMP_RS05430 -2.5 -5.4 TIGR00288 family NYN domain-containing protein compare
MMP_RS08645 -2.5 -7.6 UPF0179 family protein compare
MMP_RS06855 -2.5 -11.5 hypothetical protein compare
MMP_RS08500 -2.5 -5.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS01975 -2.5 -15.2 hypothetical protein compare
MMP_RS07955 -2.5 -5.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02340 -2.5 -1.8 DNA-directed RNA polymerase subunit E'' compare
MMP_RS04585 -2.5 -12.6 AIR synthase related protein compare
MMP_RS04215 -2.5 -5.7 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS05920 -2.5 -0.3 50S ribosomal protein L37e compare
MMP_RS07535 -2.4 -10.0 4Fe-4S binding protein compare
MMP_RS00730 -2.4 -4.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06120 -2.4 -2.1 UPF0147 family protein compare
MMP_RS01925 -2.4 -9.7 DUF1616 domain-containing protein compare
MMP_RS00695 -2.4 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02195 -2.4 -4.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06885 -2.4 -2.6 50S ribosome-binding GTPase compare
MMP_RS08195 -2.4 -7.2 hypothetical protein compare
MMP_RS07845 -2.4 -1.8 LL-diaminopimelate aminotransferase compare
MMP_RS01545 -2.4 -1.0 CBS domain-containing protein compare
MMP_RS06625 -2.3 -2.0 DNA primase compare
MMP_RS01755 -2.3 -1.4 DUF2097 domain-containing protein compare
MMP_RS05265 -2.3 -1.9 2-isopropylmalate synthase compare
MMP_RS00315 -2.3 -6.3 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07200 -2.3 -7.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07600 -2.3 -2.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01220 -2.3 -8.3 hypothetical protein compare
MMP_RS08440 -2.3 -2.5 cell division protein SepF compare
MMP_RS07695 -2.3 -5.5 DUF3236 domain-containing protein compare
MMP_RS07435 -2.3 -1.7 GMP synthase subunit A compare
MMP_RS04790 -2.3 -11.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS04900 -2.3 -14.6 hypothetical protein compare
MMP_RS04955 -2.3 -6.7 DNA topoisomerase I compare
MMP_RS06730 -2.2 -1.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS07390 -2.2 -2.2 cell division protein FtsZ compare
MMP_RS01445 -2.2 -5.6 hypothetical protein compare
MMP_RS06295 -2.2 -7.3 methanogenesis marker 14 protein compare
MMP_RS07710 -2.2 -6.6 cell division protein FtsZ compare
MMP_RS03090 -2.2 -8.2 cation:proton antiporter compare
MMP_RS05640 -2.2 -6.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS04850 -2.2 -14.3 UPF0254 family protein compare
MMP_RS04090 -2.2 -2.4 hypothetical protein compare
MMP_RS08435 -2.2 -2.2 Era-like GTP-binding protein compare
MMP_RS00985 -2.1 -4.1 CDC48 family AAA ATPase compare
MMP_RS00300 -2.1 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07700 -2.1 -8.6 DUF1188 domain-containing protein compare
MMP_RS02190 -2.1 -3.1 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01225 -2.1 -4.0 DUF5379 domain-containing protein compare
MMP_RS06395 -2.1 -3.5 ThiF family adenylyltransferase compare
MMP_RS02165 -2.1 -6.4 tRNA-dihydrouridine synthase compare
MMP_RS02345 -2.1 -3.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03640 -2.1 -3.6 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS06485 -2.1 -1.0 zinc ribbon domain-containing protein compare
MMP_RS03580 -2.1 -3.3 signal recognition particle-docking protein FtsY compare
MMP_RS00725 -2.1 -6.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS09055 -2.1 -0.9 CAP domain-containing protein compare
MMP_RS05460 -2.0 -9.5 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS08705 -2.0 -5.5 sulfopyruvate decarboxylase subunit beta compare
MMP_RS01265 -2.0 -2.6 hypothetical protein compare
MMP_RS05925 -2.0 -3.7 small nuclear ribonucleoprotein compare
MMP_RS03025 -2.0 -4.0 molybdenum cofactor guanylyltransferase compare
MMP_RS00685 -1.9 -3.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00810 -1.9 -6.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00305 -1.9 -1.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS06020 -1.9 -4.4 archaeoflavoprotein AfpA compare
MMP_RS01195 -1.9 -1.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06400 -1.9 -1.4 4Fe-4S binding protein compare
MMP_RS06925 -1.9 -2.3 ribonuclease VapC4 compare
MMP_RS01905 -1.9 -11.1 glycosyltransferase compare
MMP_RS03960 -1.9 -0.9 hypothetical protein compare
MMP_RS07875 -1.9 -4.9 hypothetical protein compare
MMP_RS01725 -1.8 -3.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS01915 -1.8 -11.3 DUF354 domain-containing protein compare
MMP_RS01875 -1.8 -7.1 N-acetyltransferase compare
MMP_RS02875 -1.8 -6.7 chorismate pyruvate-lyase family protein compare
MMP_RS03390 -1.8 -4.4 malate dehydrogenase compare
MMP_RS08570 -1.8 -8.2 coenzyme F420-0:L-glutamate ligase compare
MMP_RS03475 -1.7 -0.6 hypothetical protein compare
MMP_RS08745 -1.7 -5.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS05020 -1.7 -3.5 hypothetical protein compare
MMP_RS06895 -1.7 -1.5 selenocysteine-specific translation elongation factor compare
MMP_RS01910 -1.7 -8.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02780 -1.7 -6.3 hypothetical protein compare
MMP_RS01970 -1.7 -8.3 TIGR04279 domain-containing protein compare
MMP_RS01700 -1.7 -0.6 dihydroxy-acid dehydratase compare
MMP_RS04780 -1.7 -3.0 ribonuclease P compare
MMP_RS01955 -1.7 -2.9 hypothetical protein compare
MMP_RS04720 -1.7 -2.6 DedA family protein compare
MMP_RS06175 -1.7 -3.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS08225 -1.7 -6.9 RimK family alpha-L-glutamate ligase compare
MMP_RS08635 -1.7 -1.5 UbiA family prenyltransferase compare
MMP_RS01885 -1.7 -6.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS04875 -1.7 -4.3 energy-converting hydrogenase B subunit P compare
MMP_RS08155 -1.6 -6.3 hypothetical protein compare
MMP_RS05540 -1.6 -2.6 hypothetical protein compare
MMP_RS01880 -1.6 -4.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07530 -1.6 -6.9 4Fe-4S binding protein compare
MMP_RS06230 -1.6 -1.9 helix-turn-helix domain-containing protein compare
MMP_RS06340 -1.6 -5.7 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07575 -1.6 -2.6 RNA ligase partner protein compare
MMP_RS07385 -1.6 -1.8 protein translocase SEC61 complex subunit gamma compare
MMP_RS08660 -1.6 -6.4 DHH family phosphoesterase compare
MMP_RS05280 -1.5 -6.6 COG1361 S-layer family protein compare
MMP_RS00035 -1.5 -5.2 DUF2098 family protein compare
MMP_RS00110 -1.5 -2.3 hypothetical protein compare
MMP_RS06940 -1.4 -1.8 polyprenyl diphosphate synthase compare
MMP_RS04500 -1.4 -10.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03420 -1.4 -2.6 acetolactate synthase small subunit compare
MMP_RS01155 -1.4 -4.5 XRE family transcriptional regulator compare
MMP_RS04605 -1.4 -2.8 cobalt ECF transporter T component CbiQ compare
MMP_RS02595 -1.4 -1.0 putative zinc-binding protein compare
MMP_RS00520 -1.4 -1.2 RNA polymerase Rpb4 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments