Experiment set7IT058 for Methanococcus maripaludis S2

Compare to:

N2 fixation, H2 media

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS03340 +2.7 1.9 ABC transporter ATP-binding protein compare
MMP_RS04885 +2.1 9.9 sulfite exporter TauE/SafE family protein compare
MMP_RS02885 +2.0 10.7 molybdopterin biosynthesis protein compare
MMP_RS08320 +1.7 5.8 molybdopterin molybdotransferase MoeA compare
MMP_RS06325 +1.7 2.1 hypothetical protein compare
MMP_RS06870 +1.7 5.3 DedA family protein compare
MMP_RS08310 +1.5 2.5 TMEM165/GDT1 family protein compare
MMP_RS02045 +1.5 2.1 tRNA-Met compare
MMP_RS06715 +1.5 8.3 cache domain-containing protein compare
MMP_RS06540 +1.4 3.4 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS01570 +1.4 1.9 hypothetical protein compare
MMP_RS06720 +1.4 3.6 response regulator transcription factor compare
MMP_RS07765 +1.3 3.8 sodium:alanine symporter family protein compare
MMP_RS05975 +1.2 1.6 hypothetical protein compare
MMP_RS00155 +1.2 3.1 heavy metal-binding domain-containing protein compare
MMP_RS00325 +1.1 1.7 RNA-binding protein compare
MMP_RS04145 +1.1 1.5 hypothetical protein compare
MMP_RS02300 +1.1 3.9 NAD(P)H-dependent oxidoreductase compare
MMP_RS05110 +1.1 3.7 16S ribosomal RNA methyltransferase A compare
MMP_RS00430 +1.1 2.0 hypothetical protein compare
MMP_RS05315 +1.0 1.6 hypothetical protein compare
MMP_RS08390 +1.0 3.3 DUF5400 domain-containing protein compare
MMP_RS01240 +1.0 0.7 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS08555 +1.0 1.5 hypothetical protein compare
MMP_RS01200 +1.0 1.8 hypothetical protein compare
MMP_RS01135 +0.9 5.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS05795 +0.9 1.7 redox-regulated ATPase YchF compare
MMP_RS00650 +0.9 3.4 ABC transporter ATP-binding protein compare
MMP_RS01145 +0.9 2.9 ABC transporter ATP-binding protein compare
MMP_RS03465 +0.9 0.9 adenine phosphoribosyltransferase compare
MMP_RS06685 +0.9 4.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07835 +0.9 3.2 TldD/PmbA family protein compare
MMP_RS00185 +0.8 5.2 potassium channel protein compare
MMP_RS08350 +0.8 0.6 hypothetical protein compare
MMP_RS02290 +0.8 4.1 MBL fold metallo-hydrolase compare
MMP_RS07350 +0.8 1.3 preprotein translocase subunit Sec61beta compare
MMP_RS00855 +0.8 2.1 DUF367 family protein compare
MMP_RS00705 +0.8 1.2 hypothetical protein compare
MMP_RS07620 +0.8 2.4 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS03065 +0.8 1.3 AzlC family ABC transporter permease compare
MMP_RS05835 +0.8 0.5 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS07560 +0.8 2.0 prefoldin subunit alpha compare
MMP_RS00345 +0.7 1.9 DUF2666 domain-containing protein compare
MMP_RS01280 +0.7 4.1 DUF515 domain-containing protein compare
MMP_RS01660 +0.7 1.1 hypothetical protein compare
MMP_RS05695 +0.7 3.1 phospholipase D-like domain-containing protein compare
MMP_RS01320 +0.7 1.8 hypothetical protein compare
MMP_RS00295 +0.7 1.1 gamma carbonic anhydrase family protein compare
MMP_RS03220 +0.7 1.5 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS04195 +0.7 1.6 flavodoxin compare
MMP_RS07915 +0.7 1.4 DUF4870 domain-containing protein compare
MMP_RS07775 +0.7 1.8 alanine dehydrogenase compare
MMP_RS01150 +0.7 1.7 aldo/keto reductase compare
MMP_RS02390 +0.6 2.1 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS02410 +0.6 1.1 ABC transporter substrate-binding protein compare
MMP_RS00240 +0.6 3.2 type II secretion system F family protein compare
MMP_RS06585 +0.6 0.9 DMT family protein compare
MMP_RS01650 +0.6 0.4 sulfurtransferase TusA family protein compare
MMP_RS09050 +0.6 0.9 CAP domain-containing protein compare
MMP_RS07850 +0.6 1.2 prephenate dehydratase compare
MMP_RS08415 +0.6 0.8 radical SAM protein compare
MMP_RS01120 +0.6 3.0 permease compare
MMP_RS08930 +0.6 0.7 hypothetical protein compare
MMP_RS06250 +0.6 1.5 hypothetical protein compare
MMP_RS01420 +0.6 0.9 hypothetical protein compare
MMP_RS01485 +0.6 1.8 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS01260 +0.6 1.7 HDIG domain-containing protein compare
MMP_RS05090 +0.6 2.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS02745 +0.6 1.1 hypothetical protein compare
MMP_RS01160 +0.6 1.8 DMT family transporter compare
MMP_RS03150 +0.6 2.3 phosphoglycerate mutase compare
MMP_RS01785 +0.6 3.3 hypothetical protein compare
MMP_RS08410 +0.6 2.2 DUF169 domain-containing protein compare
MMP_RS08275 +0.6 2.0 hypothetical protein compare
MMP_RS00660 +0.6 3.0 alkaline phosphatase family protein compare
MMP_RS06075 +0.6 2.5 class I SAM-dependent methyltransferase compare
MMP_RS08665 +0.6 2.9 hypothetical protein compare
MMP_RS08260 +0.6 2.4 DUF99 family protein compare
MMP_RS05715 +0.6 1.7 hypothetical protein compare
MMP_RS07805 +0.6 1.4 ABC transporter permease compare
MMP_RS08775 +0.6 2.1 methanogenesis marker 9 domain-containing protein compare
MMP_RS03460 +0.6 1.7 U32 family peptidase compare
MMP_RS08160 +0.6 1.6 EamA family transporter compare
MMP_RS01285 +0.6 2.3 hypothetical protein compare
MMP_RS00475 +0.5 2.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00085 +0.5 2.3 DNA cytosine methyltransferase compare
MMP_RS06345 +0.5 2.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01290 +0.5 3.5 class III signal peptide-containing protein compare
MMP_RS07195 +0.5 1.8 M20 family metallo-hydrolase compare
MMP_RS04550 +0.5 3.8 S-layer protein compare
MMP_RS01550 +0.5 1.6 DUF1624 domain-containing protein compare
MMP_RS03100 +0.5 1.4 hypothetical protein compare
MMP_RS02375 +0.5 2.5 hypothetical protein compare
MMP_RS00245 +0.5 3.5 type II secretion system F family protein compare
MMP_RS08485 +0.5 2.1 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS03490 +0.5 0.7 DUF2115 domain-containing protein compare
MMP_RS05155 +0.5 2.1 hypothetical protein compare
MMP_RS00960 +0.5 1.5 iron export ABC transporter permease subunit FetB compare
MMP_RS05720 +0.5 0.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS08285 +0.5 2.2 serine/threonine protein kinase compare
MMP_RS05435 +0.5 1.7 5'/3'-nucleotidase SurE compare
MMP_RS00545 +0.5 1.3 XRE family transcriptional regulator compare
MMP_RS03615 +0.5 2.7 4Fe-4S binding protein compare
MMP_RS00375 +0.5 2.1 ammonium transporter compare
MMP_RS08670 +0.5 1.3 metallophosphoesterase compare
MMP_RS03865 +0.5 2.3 aspartate/glutamate racemase family protein compare
MMP_RS00105 +0.5 3.1 hypothetical protein compare
MMP_RS01065 +0.5 2.7 alpha/beta hydrolase compare
MMP_RS07815 +0.5 0.5 DUF2120 domain-containing protein compare
MMP_RS01495 +0.5 1.8 TraB/GumN family protein compare
MMP_RS05820 +0.5 1.6 RNA-binding transcriptional accessory protein compare
MMP_RS02720 +0.5 0.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS00195 +0.5 3.5 DUF4013 domain-containing protein compare
MMP_RS06650 +0.5 2.1 glycoside hydrolase family 57 protein compare
MMP_RS08700 +0.5 1.4 hypothetical protein compare
MMP_RS04315 +0.5 1.9 corrinoid protein compare
MMP_RS03115 +0.5 2.3 hypothetical protein compare
MMP_RS01620 +0.4 1.1 hypothetical protein compare
MMP_RS00975 +0.4 2.2 HD domain-containing protein compare
MMP_RS06215 +0.4 0.9 30S ribosomal protein S6e compare
MMP_RS07650 +0.4 2.4 TldD/PmbA family protein compare
MMP_RS00250 +0.4 2.2 Flp pilus assembly complex ATPase component TadA compare
MMP_RS01055 +0.4 0.8 hypothetical protein compare
MMP_RS06045 +0.4 2.1 DNA polymerase compare
MMP_RS06500 +0.4 1.7 ATP-binding protein compare
MMP_RS06655 +0.4 1.4 glycoside hydrolase family 15 protein compare
MMP_RS04635 +0.4 1.7 GNAT family N-acetyltransferase compare
MMP_RS06545 +0.4 0.8 ferredoxin family protein compare
MMP_RS03675 +0.4 2.1 RimK family alpha-L-glutamate ligase compare
MMP_RS04800 +0.4 2.1 chemotaxis protein CheW compare
MMP_RS06910 +0.4 1.4 RlmF-related methyltransferase compare
MMP_RS08760 +0.4 1.0 hypothetical protein compare
MMP_RS06065 +0.4 2.7 iron ABC transporter substrate-binding protein compare
MMP_RS08365 +0.4 1.1 energy conserving hydrogenase EhbF compare
MMP_RS04300 +0.4 2.0 hypothetical protein compare
MMP_RS00145 +0.4 1.5 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS06320 +0.4 1.0 hypothetical protein compare
MMP_RS01780 +0.4 1.4 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS02915 +0.4 1.4 amino acid ABC transporter permease compare
MMP_RS04205 +0.4 1.6 carboxymuconolactone decarboxylase family protein compare
MMP_RS06745 +0.4 0.8 DUF2119 domain-containing protein compare
MMP_RS05780 +0.4 1.6 multidrug resistance efflux transporter family protein compare
MMP_RS06705 +0.4 1.3 formate/nitrite transporter family protein compare
MMP_RS00990 +0.4 1.3 hypothetical protein compare
MMP_RS06680 +0.4 1.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03900 +0.4 1.0 minichromosome maintenance protein MCM compare
MMP_RS01435 +0.4 0.6 DMT family transporter compare
MMP_RS00290 +0.4 1.0 hypothetical protein compare
MMP_RS06590 +0.4 0.9 GNAT family N-acetyltransferase compare
MMP_RS08200 +0.4 2.2 archaeosine synthase subunit alpha compare
MMP_RS01525 +0.4 0.5 nucleoside-diphosphate kinase compare
MMP_RS04825 +0.4 1.9 protein-glutamate O-methyltransferase CheR compare
MMP_RS05470 +0.4 1.9 DUF523 and DUF1722 domain-containing protein compare
MMP_RS00125 +0.4 0.4 DUF2798 domain-containing protein compare
MMP_RS03385 +0.4 0.3 cation diffusion facilitator family transporter compare
MMP_RS03890 +0.4 0.9 DUF2540 domain-containing protein compare
MMP_RS05675 +0.4 0.5 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS01630 +0.4 1.2 N-glycosylase/DNA lyase compare
MMP_RS02995 +0.4 1.0 acyl-CoA thioesterase compare
MMP_RS06055 +0.4 1.3 peroxiredoxin compare
MMP_RS06660 +0.4 1.6 glycosyltransferase family 4 protein compare
MMP_RS01475 +0.4 1.1 phosphosulfolactate synthase compare
MMP_RS05150 +0.4 1.7 hypothetical protein compare
MMP_RS03875 +0.4 1.0 hypothetical protein compare
MMP_RS02705 +0.4 1.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08395 +0.4 1.3 DsrE family protein compare
MMP_RS00940 +0.4 1.3 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS04120 +0.4 1.7 hypothetical protein compare
MMP_RS02990 +0.4 1.7 AMP-binding protein compare
MMP_RS00665 +0.4 0.7 hypothetical protein compare
MMP_RS01430 +0.3 1.2 mechanosensitive ion channel family protein compare
MMP_RS01270 +0.3 1.8 prepilin peptidase compare
MMP_RS01305 +0.3 2.2 hypothetical protein compare
MMP_RS07970 +0.3 0.6 hypothetical protein compare
MMP_RS00800 +0.3 1.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05985 +0.3 0.3 hypothetical protein compare
MMP_RS02805 +0.3 0.4 HEPN domain-containing protein compare
MMP_RS01855 +0.3 1.3 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS08625 +0.3 1.6 type II/IV secretion system ATPase subunit compare
MMP_RS06070 +0.3 1.7 iron ABC transporter substrate-binding protein compare
MMP_RS09065 +0.3 1.6 hypothetical protein compare
MMP_RS06335 +0.3 0.6 HAD family hydrolase compare
MMP_RS01845 +0.3 1.9 hypothetical protein compare
MMP_RS08990 +0.3 1.2 hypothetical protein compare
MMP_RS00335 +0.3 0.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS07150 +0.3 1.3 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS03405 +0.3 0.8 RNA 3'-terminal phosphate cyclase compare
MMP_RS00655 +0.3 0.7 hypothetical protein compare
MMP_RS03335 +0.3 0.8 ABC transporter permease compare
MMP_RS08685 +0.3 1.4 hypothetical protein compare
MMP_RS01100 +0.3 0.3 ABC transporter ATP-binding protein compare
MMP_RS06575 +0.3 0.8 fluoride efflux transporter CrcB compare
MMP_RS07720 +0.3 1.2 4Fe-4S binding protein compare
MMP_RS00435 +0.3 1.6 CPBP family intramembrane metalloprotease compare
MMP_RS02695 +0.3 1.0 formylmethanofuran dehydrogenase subunit A compare
MMP_RS08455 +0.3 0.7 multiprotein bridging factor aMBF1 compare
MMP_RS04580 +0.3 1.6 hypothetical protein compare
MMP_RS07985 +0.3 1.4 nitroreductase family protein compare
MMP_RS05525 +0.3 1.1 calcium/sodium antiporter compare
MMP_RS06570 +0.3 0.6 DUF190 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments