Experiment set7IT057 for Pseudomonas fluorescens FW300-N2E3

Compare to:

N1B4wt with N2E3m denitrifying replicate C

200 most important genes:

  gene name fitness t score description  
AO353_00185 -3.3 -3.1 phage tail protein compare
AO353_20625 -3.2 -5.3 3-isopropylmalate dehydratase compare
AO353_06405 -3.0 -5.0 hypothetical protein compare
AO353_22075 -2.9 -5.5 hypothetical protein compare
AO353_05115 -2.9 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07215 -2.9 -7.5 anthranilate phosphoribosyltransferase compare
AO353_20620 -2.8 -6.7 isopropylmalate isomerase compare
AO353_19250 -2.8 -2.9 molybdenum cofactor guanylyltransferase compare
AO353_22105 -2.8 -6.0 nitrate reductase conserved
AO353_19055 -2.7 -8.3 universal stress protein UspA compare
AO353_08995 -2.7 -12.9 chemotaxis protein CheY compare
AO353_08510 -2.6 -5.8 3-phosphoglycerate dehydrogenase compare
AO353_10710 -2.6 -5.3 tryptophan synthase subunit beta compare
AO353_12240 -2.6 -4.9 histidine utilization repressor compare
AO353_00660 -2.6 -3.0 transcriptional regulator compare
AO353_13160 -2.6 -2.5 membrane protease HflC compare
AO353_20095 -2.6 -6.6 histidine kinase compare
AO353_20695 -2.6 -6.3 O-succinylhomoserine sulfhydrylase compare
AO353_14795 -2.6 -5.5 molybdopterin-synthase adenylyltransferase compare
AO353_19090 -2.5 -1.7 MarR family transcriptional regulator compare
AO353_05625 -2.5 -1.7 transcription elongation factor GreA compare
AO353_21625 -2.5 -1.7 Fe/S biogenesis protein NfuA compare
AO353_22100 -2.5 -10.2 nitrate reductase conserved
AO353_15170 -2.5 -3.7 cytochrome D ubiquinol oxidase subunit III compare
AO353_07220 -2.4 -8.8 anthranilate synthase compare
AO353_14150 -2.4 -1.6 peptidylprolyl isomerase compare
AO353_16495 -2.4 -6.6 zinc metallopeptidase RseP compare
AO353_08465 -2.4 -13.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_09060 -2.4 -3.0 hypothetical protein compare
AO353_03585 -2.4 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_04660 -2.3 -5.6 molybdenum cofactor biosynthesis protein MoaC compare
AO353_12520 -2.3 -11.0 glutamate synthase compare
AO353_05110 -2.3 -10.1 histidinol dehydrogenase compare
AO353_00460 -2.3 -2.6 TetR family transcriptional regulator compare
AO353_08780 -2.3 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_02070 -2.3 -4.7 prephenate dehydratase compare
AO353_12070 -2.3 -8.9 imidazoleglycerol-phosphate dehydratase compare
AO353_27035 -2.3 -6.6 molybdenum ABC transporter permease compare
AO353_22110 -2.2 -5.2 nitrate reductase conserved
AO353_07210 -2.2 -5.9 indole-3-glycerol-phosphate synthase compare
AO353_22080 -2.2 -9.0 histidine kinase compare
AO353_12515 -2.2 -16.1 glutamate synthase compare
AO353_12090 -2.2 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_27030 -2.2 -7.0 molybdate ABC transporter substrate-binding protein compare
AO353_27675 -2.2 -9.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_08185 -2.2 -9.2 methionine biosynthesis protein MetW compare
AO353_14000 -2.2 -4.9 GTP-binding protein compare
AO353_08475 -2.2 -8.7 phosphoserine phosphatase compare
AO353_15605 -2.1 -7.0 histidine kinase compare
AO353_06495 -2.1 -3.8 gamma-glutamyl phosphate reductase compare
AO353_18780 -2.1 -7.1 cobyrinic acid a,c-diamide synthase compare
AO353_25255 -2.1 -6.8 large subunit of pyruvate transporter (CstA) (from data) compare
AO353_08345 -2.1 -8.5 dihydroxy-acid dehydratase compare
AO353_08180 -2.1 -11.2 homoserine O-acetyltransferase compare
AO353_00655 -2.1 -8.8 coproporphyrinogen III oxidase compare
AO353_12365 -2.1 -3.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_20665 -2.1 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_25245 -2.1 -7.3 regulator compare
AO353_07230 -2.1 -13.4 anthranilate synthase compare
AO353_15925 -2.0 -10.3 2-isopropylmalate synthase compare
AO353_01595 -2.0 -2.9 Flp pilus assembly protein CpaB compare
AO353_02270 -2.0 -5.0 isochorismatase compare
AO353_14505 -2.0 -10.6 ketol-acid reductoisomerase compare
AO353_19060 -2.0 -4.3 CysB family transcriptional regulator compare
AO353_12085 -2.0 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20635 -2.0 -10.1 3-isopropylmalate dehydrogenase compare
AO353_22095 -2.0 -11.8 nitrate reductase conserved
AO353_19900 -2.0 -9.6 universal stress protein UspA compare
AO353_25250 -1.9 -6.9 histidine kinase compare
AO353_05800 -1.9 -5.4 hypothetical protein compare
AO353_07575 -1.9 -5.8 DNA polymerase III subunit epsilon compare
AO353_05125 -1.9 -4.4 BolA family transcriptional regulator compare
AO353_13165 -1.9 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_14115 -1.9 -5.7 gamma-glutamyl kinase compare
AO353_18425 -1.9 -4.0 hypothetical protein compare
AO353_05185 -1.9 -5.3 hypothetical protein compare
AO353_27040 -1.9 -5.6 molybdenum ABC transporter ATP-binding protein compare
AO353_03020 -1.9 -7.0 arginine N-succinyltransferase compare
AO353_05075 -1.9 -8.7 adenylylsulfate kinase compare
AO353_00635 -1.9 -3.6 hypothetical protein compare
AO353_10705 -1.9 -4.0 tryptophan synthase subunit alpha compare
AO353_22800 -1.9 -3.5 sulfite reductase compare
AO353_05195 -1.9 -7.5 glmZ(sRNA)-inactivating NTPase compare
AO353_02075 -1.8 -9.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_23495 -1.8 -3.0 SAM-dependent methyltransferase compare
AO353_08015 -1.8 -5.7 5,10-methylenetetrahydrofolate reductase compare
AO353_15250 -1.8 -2.4 cytochrome B compare
AO353_20785 -1.8 -5.5 carbon storage regulator CsrA compare
AO353_01780 -1.8 -9.2 heat-shock protein Hsp90 compare
AO353_12115 -1.8 -1.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_06040 -1.8 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_22000 -1.8 -5.9 nitric oxide reductase activation protein NorD compare
AO353_21935 -1.7 -2.7 nitrite reductase compare
AO353_10670 -1.7 -5.6 shikimate dehydrogenase compare
AO353_10945 -1.7 -2.8 cytochrome C compare
AO353_07140 -1.7 -11.8 peptidase M23 compare
AO353_27000 -1.7 -2.0 hypothetical protein compare
AO353_09050 -1.7 -3.6 recombinase XerC compare
AO353_12075 -1.6 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14370 -1.6 -6.1 glucose-6-phosphate isomerase compare
AO353_14400 -1.6 -4.0 Fis family transcriptional regulator compare
AO353_20300 -1.6 -7.0 anti-sigma factor compare
AO353_22935 -1.6 -8.3 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO353_17650 -1.6 -4.0 response regulator SirA compare
AO353_07345 -1.6 -11.8 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_07335 -1.6 -11.3 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_08165 -1.6 -2.7 pyrroline-5-carboxylate reductase compare
AO353_05325 -1.6 -4.9 GntR family transcriptional regulator compare
AO353_08505 -1.6 -8.4 FAD-linked oxidase compare
AO353_02810 -1.6 -6.8 histidine kinase compare
AO353_22005 -1.6 -7.6 transcription factor compare
AO353_22945 -1.6 -9.3 glycogen branching protein compare
AO353_07145 -1.6 -8.6 anhydro-N-acetylmuramic acid kinase compare
AO353_10315 -1.6 -10.6 sulfate transporter compare
AO353_05080 -1.6 -8.2 sulfate adenylyltransferase compare
AO353_26595 -1.5 -3.9 copper resistance protein CopD compare
AO353_13070 -1.5 -6.0 phosphoserine phosphatase compare
AO353_12500 -1.5 -1.0 shikimate kinase compare
AO353_04650 -1.5 -2.0 molybdenum cofactor biosynthesis protein MoaE compare
AO353_26525 -1.5 -2.8 hypothetical protein compare
AO353_04105 -1.5 -6.0 argininosuccinate synthase compare
AO353_07290 -1.5 -7.2 mannose-1-phosphate guanylyltransferase compare
AO353_07340 -1.5 -11.0 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_09000 -1.5 -3.0 argininosuccinate lyase compare
AO353_19255 -1.5 -5.0 molybdenum cofactor biosynthesis protein B compare
AO353_16925 -1.5 -9.9 AmpG family muropeptide MFS transporter compare
AO353_01995 -1.5 -9.0 hypothetical protein compare
AO353_09885 -1.5 -2.0 transcriptional regulator PhoU compare
AO353_13155 -1.5 -2.6 hypothetical protein compare
AO353_07155 -1.5 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_16195 -1.5 -1.6 DNA mismatch repair protein MutT compare
AO353_00430 -1.5 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_00385 -1.5 -4.2 glycerophosphodiester phosphodiesterase compare
AO353_12420 -1.4 -2.3 predicted FeS cluster maintenance protein (from data) compare
AO353_04185 -1.4 -4.4 DeoR family transcriptional regulator compare
AO353_13640 -1.4 -4.0 histidine kinase compare
AO353_16940 -1.4 -3.9 deoxycytidine triphosphate deaminase compare
AO353_22085 -1.4 -5.7 MFS transporter compare
AO353_02010 -1.4 -4.5 glycosyl transferase family 1 compare
AO353_02020 -1.4 -3.1 hypothetical protein compare
AO353_08130 -1.4 -2.1 uracil phosphoribosyltransferase compare
AO353_14410 -1.4 -5.0 MFS transporter compare
AO353_06720 -1.4 -1.8 NrdR family transcriptional regulator compare
AO353_20175 -1.4 -2.9 ATP-dependent Clp protease proteolytic subunit compare
AO353_20815 -1.4 -3.1 LacI family transcriptional regulator compare
AO353_02710 -1.4 -7.3 (p)ppGpp synthetase compare
AO353_27580 -1.4 -3.5 hypothetical protein compare
AO353_12690 -1.4 -1.1 acyl carrier protein compare
AO353_14500 -1.4 -5.0 acetolactate synthase 3 regulatory subunit compare
AO353_01865 -1.4 -9.0 cation/acetate symporter ActP compare
AO353_01870 -1.3 -5.4 hypothetical protein compare
AO353_00630 -1.3 -4.8 (Fe-S)-binding protein compare
AO353_27155 -1.3 -2.4 hypothetical protein compare
AO353_14405 -1.3 -8.3 ATPase compare
AO353_08060 -1.3 -1.7 hypothetical protein compare
AO353_27650 -1.3 -3.1 cell division protein FtsK compare
AO353_15295 -1.3 -4.2 division/cell wall cluster transcriptional repressor MraZ compare
AO353_06765 -1.3 -6.2 hypothetical protein compare
AO353_25430 -1.3 -4.5 ABC transporter permease compare
AO353_14495 -1.3 -6.3 acetolactate synthase 3 catalytic subunit compare
AO353_10030 -1.3 -6.3 pyruvate carboxylase subunit A compare
AO353_29280 -1.3 -3.0 hypothetical protein compare
AO353_04965 -1.3 -3.6 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_18890 -1.3 -3.7 cytochrome C compare
AO353_03605 -1.2 -1.0 FmdB family transcriptional regulator compare
AO353_14930 -1.2 -2.3 GntR family transcriptional regulator compare
AO353_18560 -1.2 -2.1 class I peptide chain release factor compare
AO353_11780 -1.2 -2.7 hypothetical protein compare
AO353_18505 -1.2 -1.3 translation initiation factor 2 compare
AO353_19260 -1.2 -6.7 molybdenum cofactor biosynthesis protein MoaA compare
AO353_19240 -1.2 -5.1 pseudouridine synthase compare
AO353_03590 -1.2 -2.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_01310 -1.2 -3.2 radical SAM protein compare
AO353_07295 -1.2 -7.9 aminoglycoside phosphotransferase compare
AO353_18925 -1.2 -1.7 ATPase compare
AO353_22645 -1.2 -1.7 hypothetical protein compare
AO353_05205 -1.2 -7.5 peptidase PmbA compare
AO353_25160 -1.2 -3.5 ABC transporter substrate-binding protein compare
AO353_20540 -1.2 -4.4 aromatic amino acid aminotransferase compare
AO353_01985 -1.2 -5.7 hypothetical protein compare
AO353_21940 -1.2 -1.9 protein nirG compare
AO353_13985 -1.2 -2.3 pilus assembly protein compare
AO353_05215 -1.2 -6.9 protease TldD compare
AO353_27090 -1.2 -1.9 hypothetical protein compare
AO353_24535 -1.1 -2.0 hypothetical protein compare
AO353_19145 -1.1 -2.9 protease HtpX compare
AO353_12045 -1.1 -3.1 iron transporter compare
AO353_05105 -1.1 -5.6 histidinol-phosphate aminotransferase compare
AO353_08685 -1.1 -4.1 N-acetylglutamate synthase compare
AO353_27680 -1.1 -4.6 ATP-dependent Clp protease adaptor ClpS compare
AO353_02690 -1.1 -5.1 dehydrogenase compare
AO353_22040 -1.1 -4.5 molybdenum cofactor biosynthesis protein B compare
AO353_20495 -1.1 -2.1 NUDIX hydrolase compare
AO353_03715 -1.1 -2.0 H-NS histone compare
AO353_10495 -1.1 -2.8 serine hydroxymethyltransferase compare
AO353_03580 -1.1 -2.4 ATP-dependent DNA helicase RuvB compare
AO353_12080 -1.1 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_26830 -1.1 -3.0 histidine kinase compare
AO353_04930 -1.1 -1.8 flavodoxin compare
AO353_11920 -1.1 -2.5 hypothetical protein compare


Specific Phenotypes

For 41 genes in this experiment

For anaerobic Sodium pyruvate in Pseudomonas fluorescens FW300-N2E3

For anaerobic Sodium pyruvate across organisms