Experiment set7IT057 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1790.1 -3.1 -3.7 Zinc uptake regulation protein ZUR compare
Xcc-8004.2011.1 -2.8 -2.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4620.1 -2.8 -7.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3054.1 -2.6 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1727.1 -2.5 -2.6 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.3346.1 -2.5 -2.4 hypothetical protein compare
Xcc-8004.2406.1 -2.5 -10.4 Manganese transport protein MntH compare
Xcc-8004.4752.1 -2.4 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4824.1 -2.4 -9.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.271.1 -2.4 -3.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2217.1 -2.4 -3.2 FIG01209779: hypothetical protein compare
Xcc-8004.1241.1 -2.4 -4.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2672.1 -2.3 -2.4 hypothetical protein compare
Xcc-8004.1768.1 -2.2 -1.7 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.914.1 -2.2 -10.0 tail-specific protease compare
Xcc-8004.2110.1 -2.1 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1436.1 -2.1 -1.9 Holliday junction DNA helicase RuvA compare
Xcc-8004.1365.1 -2.0 -1.4 FIG01211058: hypothetical protein compare
Xcc-8004.3855.1 -2.0 -8.2 FIG01209965: hypothetical protein compare
Xcc-8004.4806.1 -2.0 -2.0 FIG01211609: hypothetical protein compare
Xcc-8004.1615.1 -1.9 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4481.1 -1.9 -8.5 hypothetical protein compare
Xcc-8004.1914.1 -1.8 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.3324.1 -1.8 -3.6 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.1660.1 -1.8 -0.9 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.357.1 -1.7 -1.5 FIG01210225: hypothetical protein compare
Xcc-8004.1400.1 -1.7 -2.6 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1336.1 -1.7 -3.7 two-component system sensor protein compare
Xcc-8004.1437.1 -1.7 -4.8 Kup system potassium uptake protein compare
Xcc-8004.2337.1 -1.7 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3322.1 -1.7 -1.5 FIG01211446: hypothetical protein compare
Xcc-8004.1616.1 -1.6 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.4510.1 -1.6 -1.1 ATP binding component of ABC-transporter compare
Xcc-8004.4693.1 -1.6 -2.2 hypothetical protein compare
Xcc-8004.3728.1 -1.6 -1.6 hypothetical protein compare
Xcc-8004.4112.1 -1.6 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1959.1 -1.6 -1.9 hypothetical protein compare
Xcc-8004.645.1 -1.6 -1.3 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4286.1 -1.5 -6.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.1454.1 -1.5 -2.7 hypothetical protein compare
Xcc-8004.1236.1 -1.5 -4.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.5133.1 -1.5 -1.3 FIG01212313: hypothetical protein compare
Xcc-8004.171.1 -1.5 -1.0 hypothetical protein compare
Xcc-8004.4403.1 -1.5 -2.4 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.2389.1 -1.5 -1.5 protein of unknown function DUF1244 compare
Xcc-8004.1720.1 -1.5 -1.9 UPF0301 protein YqgE compare
Xcc-8004.3852.1 -1.5 -4.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.4248.1 -1.4 -3.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.5125.1 -1.4 -3.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.3320.1 -1.4 -1.0 FIG01209869: hypothetical protein compare
Xcc-8004.3296.1 -1.4 -2.9 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.924.1 -1.4 -1.7 FIG01200701: possible membrane protein compare
Xcc-8004.1466.1 -1.4 -2.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.2699.1 -1.4 -5.0 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4596.1 -1.3 -5.6 hypothetical protein compare
Xcc-8004.1196.1 -1.3 -5.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.5114.1 -1.3 -5.1 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4669.1 -1.3 -6.6 Transcriptional regulator NtrC family compare
Xcc-8004.2497.1 -1.3 -0.7 Mobile element protein compare
Xcc-8004.3310.1 -1.3 -3.2 Chromosome partition protein smc compare
Xcc-8004.2199.1 -1.3 -1.5 Hemerythrin-like protein PA1673 compare
Xcc-8004.3304.1 -1.3 -0.9 FIG01211108: hypothetical protein compare
Xcc-8004.3903.1 -1.3 -2.4 Mlr6856 protein compare
Xcc-8004.3498.1 -1.2 -0.6 hypothetical protein compare
Xcc-8004.3376.1 -1.2 -2.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.4477.1 -1.2 -1.3 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4884.1 -1.2 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.683.1 -1.2 -2.5 hypothetical protein compare
Xcc-8004.3049.1 -1.2 -5.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3321.1 -1.2 -1.4 FIG01209847: hypothetical protein compare
Xcc-8004.2169.1 -1.2 -2.0 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.3536.1 -1.2 -3.3 FIG01210913: hypothetical protein compare
Xcc-8004.3329.1 -1.2 -3.2 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.4231.1 -1.2 -0.9 two-component system regulatory protein compare
Xcc-8004.2653.1 -1.2 -2.5 hypothetical protein compare
Xcc-8004.3433.1 -1.2 -4.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2533.1 -1.2 -2.7 Candidate type III effector Hop protein compare
Xcc-8004.456.1 -1.2 -1.1 carbonic anhydrase, family 3 compare
Xcc-8004.1511.1 -1.2 -2.3 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4810.1 -1.1 -6.5 hypothetical protein compare
Xcc-8004.704.1 -1.1 -2.4 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.2324.1 -1.1 -3.3 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Xcc-8004.3742.1 -1.1 -1.7 Type III effector compare
Xcc-8004.2833.1 -1.1 -2.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4947.1 -1.1 -1.8 Histone H1 compare
Xcc-8004.1676.1 -1.1 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.738.1 -1.1 -1.4 Malonate decarboxylase gamma subunit compare
Xcc-8004.3721.1 -1.1 -1.2 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.1677.1 -1.1 -3.0 FIG01209993: hypothetical protein compare
Xcc-8004.2666.1 -1.1 -4.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3119.1 -1.1 -3.0 GTP-binding protein HflX compare
Xcc-8004.213.1 -1.1 -8.0 Putative OMR family iron-siderophore receptor precursor compare
Xcc-8004.3674.1 -1.1 -2.5 FIG01209931: hypothetical protein compare
Xcc-8004.3632.1 -1.1 -2.4 FIG01209689: hypothetical protein compare
Xcc-8004.5268.1 -1.1 -1.1 Mobile element protein compare
Xcc-8004.1770.1 -1.1 -2.5 hypothetical protein compare
Xcc-8004.1334.1 -1.1 -1.0 hypothetical protein compare
Xcc-8004.75.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.117.1 -1.0 -2.4 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.3873.1 -1.0 -2.2 FIG01212144: hypothetical protein compare
Xcc-8004.2839.1 -1.0 -1.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.270.1 -1.0 -3.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3754.1 -1.0 -1.4 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.1133.1 -1.0 -1.0 Rubredoxin compare
Xcc-8004.4251.1 -1.0 -1.8 hypothetical protein compare
Xcc-8004.2761.1 -1.0 -1.1 FIG01212073: hypothetical protein compare
Xcc-8004.1606.1 -1.0 -2.5 FIG01211483: hypothetical protein compare
Xcc-8004.4283.1 -1.0 -0.8 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.2580.1 -1.0 -2.5 Mobile element protein compare
Xcc-8004.2879.1 -1.0 -0.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.576.1 -1.0 -1.8 FIG01210281: hypothetical protein compare
Xcc-8004.93.1 -1.0 -1.9 FIG01211857: hypothetical protein compare
Xcc-8004.3630.1 -1.0 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.4275.1 -1.0 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.2579.1 -1.0 -1.7 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.1809.1 -1.0 -1.2 extracellular serine protease compare
Xcc-8004.5368.1 -1.0 -2.0 FIG01210868: hypothetical protein compare
Xcc-8004.2922.1 -1.0 -1.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4439.1 -1.0 -5.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3723.1 -1.0 -1.6 hypothetical protein compare
Xcc-8004.659.1 -1.0 -1.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4430.1 -1.0 -1.1 General secretion pathway protein G compare
Xcc-8004.340.1 -1.0 -1.4 Organic hydroperoxide resistance protein compare
Xcc-8004.4507.1 -0.9 -3.6 Glycosyltransferase compare
Xcc-8004.4480.1 -0.9 -5.9 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.2314.1 -0.9 -4.2 FIG01209975: hypothetical protein compare
Xcc-8004.4945.1 -0.9 -0.6 FIG01210349: hypothetical protein compare
Xcc-8004.2321.1 -0.9 -2.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1058.1 -0.9 -1.6 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1200.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.127.1 -0.9 -1.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.957.1 -0.9 -3.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3473.1 -0.9 -1.1 FIG01213437: hypothetical protein compare
Xcc-8004.5343.1 -0.9 -4.6 hypothetical protein compare
Xcc-8004.4200.1 -0.9 -1.3 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3831.1 -0.9 -3.3 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
Xcc-8004.826.1 -0.9 -5.6 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.622.1 -0.9 -2.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.778.1 -0.9 -1.8 FIG01214273: hypothetical protein compare
Xcc-8004.3976.1 -0.9 -2.8 2-methylaconitate cis-trans isomerase compare
Xcc-8004.461.1 -0.9 -2.0 Transcriptional regulator, MarR family compare
Xcc-8004.3834.1 -0.9 -1.9 Pathogenicity-related protein compare
Xcc-8004.2086.1 -0.9 -1.3 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.5367.1 -0.9 -3.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.2958.1 -0.9 -1.5 tryptophan-rich sensory protein compare
Xcc-8004.1696.1 -0.9 -0.9 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1329.1 -0.9 -2.6 Virulence regulator compare
Xcc-8004.4329.1 -0.9 -0.9 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.585.1 -0.9 -1.3 Na(+) H(+) antiporter subunit F compare
Xcc-8004.4498.1 -0.9 -2.4 Mobile element protein compare
Xcc-8004.1427.1 -0.9 -2.2 Type I antifreeze protein compare
Xcc-8004.1764.1 -0.9 -2.8 FIG01209971: hypothetical protein compare
Xcc-8004.1316.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.3041.1 -0.8 -1.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.800.1 -0.8 -2.3 Endoglucanase (EC 3.2.1.4) compare
Xcc-8004.27.1 -0.8 -1.0 hypothetical protein compare
Xcc-8004.5280.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.4250.1 -0.8 -1.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.623.1 -0.8 -1.0 Phosphoserine phosphatase compare
Xcc-8004.3395.1 -0.8 -1.8 Transcriptional regulator, GntR family compare
Xcc-8004.1409.1 -0.8 -1.7 Cation:proton antiporter compare
Xcc-8004.657.1 -0.8 -3.4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2949.1 -0.8 -1.9 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.1826.1 -0.8 -2.3 FIG01217340: hypothetical protein compare
Xcc-8004.4499.1 -0.8 -1.6 Mobile element protein compare
Xcc-8004.3394.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.4710.1 -0.8 -1.8 FIG01211889: hypothetical protein compare
Xcc-8004.2339.1 -0.8 -1.2 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.2387.1 -0.8 -1.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.3663.1 -0.8 -1.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4639.1 -0.8 -3.3 Na+/H+ antiporter compare
Xcc-8004.2921.1 -0.8 -1.7 ferrous iron transport protein compare
Xcc-8004.1718.1 -0.8 -1.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.3459.1 -0.8 -1.3 FIG01212836: hypothetical protein compare
Xcc-8004.4538.1 -0.8 -0.8 hypothetical protein compare
Xcc-8004.4731.1 -0.8 -2.1 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Xcc-8004.1322.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.1380.1 -0.8 -0.9 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.2711.1 -0.8 -0.8 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.589.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.3954.1 -0.8 -2.2 HflC protein compare
Xcc-8004.1007.1 -0.8 -0.8 acetylxylan esterase compare
Xcc-8004.2099.1 -0.8 -3.3 FIG01210647: hypothetical protein compare
Xcc-8004.312.1 -0.8 -1.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.649.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.4073.1 -0.8 -3.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.3017.1 -0.8 -3.1 hypothetical protein compare
Xcc-8004.1658.1 -0.7 -3.1 hypothetical protein compare
Xcc-8004.3686.1 -0.7 -3.1 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.723.1 -0.7 -3.5 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Xcc-8004.2867.1 -0.7 -0.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3211.1 -0.7 -1.5 protein of unknown function DUF88 compare
Xcc-8004.3451.1 -0.7 -1.2 hypothetical protein compare
Xcc-8004.718.1 -0.7 -0.6 hypothetical protein compare
Xcc-8004.2079.1 -0.7 -1.3 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3133.1 -0.7 -2.3 ortholog of Bordetella pertussis (BX470248) BP2475 compare
Xcc-8004.833.1 -0.7 -3.8 Putative salt-induced outer membrane protein compare
Xcc-8004.3752.1 -0.7 -0.5 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1619.1 -0.7 -1.4 PspA/IM30 family protein compare
Xcc-8004.1871.1 -0.7 -1.7 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered across organisms