Experiment set7IT057 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium adipate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_00240 +3.1 23.1 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01927 +2.8 25.2 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_03361 +2.7 5.4 2-keto-3-deoxy-L-rhamnonate aldolase RhmA compare
H281DRAFT_00236 +2.6 11.5 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_06056 +2.5 19.2 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00782 +2.5 7.9 transcriptional regulator, LysR family compare
H281DRAFT_00812 +2.4 6.0 molybdopterin molybdotransferase compare
H281DRAFT_06037 +2.3 2.3 molybdate transport system substrate-binding protein compare
H281DRAFT_04302 +2.1 4.6 molybdopterin adenylyltransferase compare
H281DRAFT_04850 +2.0 3.5 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_00779 +1.9 5.4 sulfate transport system permease protein compare
H281DRAFT_06225 +1.9 14.5 Anaerobic selenocysteine-containing dehydrogenase compare
H281DRAFT_00627 +1.9 8.7 phosphoenolpyruvate synthase compare
H281DRAFT_04623 +1.8 9.9 transcriptional regulator, TetR family compare
H281DRAFT_00504 +1.8 4.8 hypothetical protein compare
H281DRAFT_01830 +1.8 7.6 transcriptional regulator, LacI family compare
H281DRAFT_02086 +1.8 10.0 transcriptional regulator, MerR family compare
H281DRAFT_03362 +1.8 4.7 Acyl-CoA dehydrogenase compare
H281DRAFT_03905 +1.7 2.3 D-methionine transport system permease protein compare
H281DRAFT_00998 +1.7 3.5 outer membrane protein, multidrug efflux system compare
H281DRAFT_04008 +1.7 4.8 RNAse PH compare
H281DRAFT_00717 +1.7 3.5 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_04338 +1.7 9.8 cyclic pyranopterin monophosphate synthase subunit MoaA compare
H281DRAFT_03611 +1.7 3.0 hopanoid-associated phosphorylase compare
H281DRAFT_06462 +1.6 3.4 hypothetical protein compare
H281DRAFT_03365 +1.6 3.3 choline dehydrogenase compare
H281DRAFT_01105 +1.6 3.3 transcriptional regulator, AraC family compare
H281DRAFT_04515 +1.5 3.7 RNAse G compare
H281DRAFT_02643 +1.5 2.3 hypothetical protein compare
H281DRAFT_01827 +1.5 2.2 hypothetical protein compare
H281DRAFT_00819 +1.4 1.7 competence protein ComEA compare
H281DRAFT_04492 +1.3 8.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04691 +1.3 9.3 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_02602 +1.3 2.7 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_01931 +1.3 5.0 UPF0042 nucleotide-binding protein compare
H281DRAFT_06581 +1.3 2.6 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04415 +1.3 1.7 phosphate uptake regulator, PhoU compare
H281DRAFT_05705 +1.3 2.9 hypothetical protein compare
H281DRAFT_06266 +1.3 4.3 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_00406 +1.3 3.3 Signal transduction histidine kinase compare
H281DRAFT_04404 +1.3 3.5 GreA/GreB family elongation factor compare
H281DRAFT_06556 +1.3 2.7 hypothetical protein compare
H281DRAFT_03674 +1.2 2.5 hypothetical protein compare
H281DRAFT_00780 +1.2 3.9 sulfate transport system permease protein compare
H281DRAFT_01204 +1.2 2.1 hypothetical protein compare
H281DRAFT_04562 +1.2 3.0 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_01071 +1.2 1.6 muconolactone delta-isomerase (EC 5.3.3.4) compare
H281DRAFT_04970 +1.2 1.1 high-affinity iron transporter compare
H281DRAFT_01894 +1.2 3.0 transcriptional regulator, MarR family compare
H281DRAFT_05102 +1.2 4.0 ribosome maturation factor RimP compare
H281DRAFT_00244 +1.2 7.3 trehalose 6-phosphate synthase compare
H281DRAFT_06039 +1.2 3.5 molybdate transport system ATP-binding protein compare
H281DRAFT_05468 +1.2 1.9 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_03360 +1.1 2.1 succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase compare
H281DRAFT_04896 +1.1 1.3 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05962 +1.1 1.3 RraA famliy compare
H281DRAFT_03266 +1.1 1.2 Nicotinamidase-related amidase compare
H281DRAFT_01509 +1.1 2.2 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_05158 +1.1 4.5 putative urate catabolism protein compare
H281DRAFT_05021 +1.1 1.6 Response regulator compare
H281DRAFT_06134 +1.1 2.3 hypothetical protein compare
H281DRAFT_03503 +1.1 3.2 transcriptional regulator, GntR family compare
H281DRAFT_04369 +1.1 3.1 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_01749 +1.1 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00147 +1.1 2.8 uncharacterized domain 1-containing protein compare
H281DRAFT_01319 +1.1 1.5 Uncharacterized protein, UPF0264 family compare
H281DRAFT_04087 +1.1 1.4 hypothetical protein compare
H281DRAFT_00390 +1.1 2.0 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_00116 +1.1 1.3 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_00746 +1.1 3.1 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_03651 +1.1 2.1 sarcosine oxidase compare
H281DRAFT_00902 +1.1 3.7 peptidyl-prolyl cis-trans isomerase D compare
H281DRAFT_05768 +1.0 2.6 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01050 +1.0 3.8 maleylacetate reductase compare
H281DRAFT_02720 +1.0 2.3 GAF domain-containing protein compare
H281DRAFT_06430 +1.0 2.2 hypothetical protein compare
H281DRAFT_05905 +1.0 2.1 hypothetical protein compare
H281DRAFT_04737 +1.0 5.3 glutaryl-CoA dehydrogenase compare
H281DRAFT_06190 +1.0 1.0 DNA-binding protein H-NS compare
H281DRAFT_02008 +1.0 5.8 phosphocarrier protein compare
H281DRAFT_03400 +1.0 1.8 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03383 +1.0 2.3 Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family compare
H281DRAFT_05903 +1.0 1.7 osmotically inducible protein OsmC compare
H281DRAFT_05724 +1.0 4.5 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_02651 +1.0 1.3 transcriptional regulator, MerR family compare
H281DRAFT_01443 +1.0 2.2 RND family efflux transporter, MFP subunit compare
H281DRAFT_05928 +1.0 2.1 hypothetical protein compare
H281DRAFT_02856 +1.0 1.6 Protein of unknown function (DUF1488) compare
H281DRAFT_03411 +1.0 2.7 hypothetical protein compare
H281DRAFT_04346 +1.0 1.6 uncharacterized protein compare
H281DRAFT_05737 +1.0 2.5 flagellar transcriptional activator FlhD compare
H281DRAFT_00888 +1.0 2.1 phytoene synthase compare
H281DRAFT_01688 +1.0 1.6 aliphatic nitrilase compare
H281DRAFT_00176 +1.0 0.8 outer membrane lipoprotein carrier protein compare
H281DRAFT_01190 +1.0 1.4 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_01474 +1.0 0.7 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_03801 +1.0 2.8 two component transcriptional regulator, winged helix family compare
H281DRAFT_02172 +0.9 4.6 transcriptional regulator, LacI family compare
H281DRAFT_04036 +0.9 4.8 tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) compare
H281DRAFT_00339 +0.9 1.3 Uncharacterized membrane protein compare
H281DRAFT_00255 +0.9 2.1 hypothetical protein compare
H281DRAFT_05722 +0.9 3.5 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) (from data) compare
H281DRAFT_02726 +0.9 1.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase compare
H281DRAFT_05778 +0.9 1.6 flagellar motor switch protein FliN/FliY compare
H281DRAFT_02529 +0.9 1.2 shikimate dehydrogenase compare
H281DRAFT_03485 +0.9 3.9 osmoprotectant transport system ATP-binding protein compare
H281DRAFT_00773 +0.9 2.6 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_01111 +0.9 1.0 transcriptional regulator, DeoR family compare
H281DRAFT_04552 +0.9 2.3 acetolactate synthase, small subunit compare
H281DRAFT_06419 +0.9 1.3 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_01321 +0.9 1.3 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_00559 +0.9 0.9 hypothetical protein compare
H281DRAFT_01304 +0.9 2.6 formaldehyde activating enzyme compare
H281DRAFT_01053 +0.9 0.7 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_00940 +0.9 3.3 psiF repeat-containing protein compare
H281DRAFT_04654 +0.9 1.4 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_00996 +0.9 1.4 ChrR Cupin-like domain-containing protein compare
H281DRAFT_02510 +0.9 2.8 Short-chain dehydrogenase compare
H281DRAFT_02741 +0.9 1.6 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_04368 +0.9 6.2 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_00254 +0.9 4.6 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_03798 +0.9 1.5 NitT/TauT family transport system permease protein compare
H281DRAFT_02459 +0.9 1.7 sarcosine oxidase subunit gamma compare
H281DRAFT_02811 +0.9 1.5 Protein of unknown function (DUF2934) compare
H281DRAFT_03245 +0.9 2.2 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_02910 +0.9 0.8 conserved hypothetical protein compare
H281DRAFT_03723 +0.9 0.9 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03428 +0.9 1.8 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_06506 +0.8 1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01231 +0.8 1.6 hypothetical protein compare
H281DRAFT_01867 +0.8 2.5 NADPH2:quinone reductase compare
H281DRAFT_00408 +0.8 2.3 Protein of unknown function (DUF1328) compare
H281DRAFT_05012 +0.8 1.1 hypothetical protein compare
H281DRAFT_05418 +0.8 3.2 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06422 +0.8 1.5 hypothetical protein compare
H281DRAFT_04158 +0.8 2.9 sorbitol ABC transporter membrane protein /mannitol ABC transporter membrane protein compare
H281DRAFT_06289 +0.8 3.8 hypothetical protein compare
H281DRAFT_02903 +0.8 1.8 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_05899 +0.8 1.8 hypothetical protein compare
H281DRAFT_02600 +0.8 1.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_06163 +0.8 0.9 hypothetical protein compare
H281DRAFT_03364 +0.8 3.0 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03719 +0.8 2.0 Zn-dependent hydrolases, including glyoxylases compare
H281DRAFT_06087 +0.8 2.2 Uncharacterized membrane protein compare
H281DRAFT_01148 +0.8 1.0 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_02718 +0.8 2.1 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01632 +0.8 5.8 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_02830 +0.8 1.4 hypothetical protein compare
H281DRAFT_04356 +0.8 1.4 anti sigma-E protein, RseA compare
H281DRAFT_01570 +0.8 2.4 luciferase-type oxidoreductase, BA3436 family compare
H281DRAFT_06511 +0.8 1.2 reactive intermediate/imine deaminase compare
H281DRAFT_03064 +0.8 3.1 Uncharacterized conserved protein compare
H281DRAFT_03437 +0.8 2.4 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_02937 +0.8 2.0 Lipocalin-like domain-containing protein compare
H281DRAFT_02276 +0.8 3.6 ParB-like nuclease domain-containing protein compare
H281DRAFT_06078 +0.8 1.5 protein of unknown function (DUF4148) compare
H281DRAFT_01006 +0.8 1.8 Fatty acid hydroxylase superfamily protein compare
H281DRAFT_04814 +0.8 3.1 putative transcriptional regulator compare
H281DRAFT_00664 +0.8 2.5 assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1) compare
H281DRAFT_02610 +0.8 2.0 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_06032 +0.8 2.7 peroxiredoxin, Ohr subfamily compare
H281DRAFT_06176 +0.8 2.7 exonuclease SbcC compare
H281DRAFT_03890 +0.8 1.2 Broad specificity phosphatase PhoE compare
H281DRAFT_03096 +0.8 2.1 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_05643 +0.8 3.2 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_05961 +0.8 1.0 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_00905 +0.8 2.1 putative ABC transport system ATP-binding protein compare
H281DRAFT_04004 +0.8 2.0 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_06354 +0.8 2.0 Sugar phosphate permease compare
H281DRAFT_01287 +0.8 1.0 mxaK protein compare
H281DRAFT_06098 +0.8 2.8 transcriptional regulator, RpiR family compare
H281DRAFT_01256 +0.8 1.1 hypothetical protein compare
H281DRAFT_01025 +0.8 1.0 transcriptional regulator, MarR family compare
H281DRAFT_01121 +0.8 1.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_02880 +0.8 2.2 chemotaxis protein methyltransferase CheR compare
H281DRAFT_02025 +0.8 2.4 hypothetical protein compare
H281DRAFT_04467 +0.8 5.1 UDP-glucose pyrophosphorylase compare
H281DRAFT_00861 +0.7 3.2 hypothetical protein compare
H281DRAFT_05943 +0.7 1.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06363 +0.7 1.5 hypothetical protein compare
H281DRAFT_02747 +0.7 1.6 hypothetical protein compare
H281DRAFT_00106 +0.7 1.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03108 +0.7 1.1 hypothetical protein compare
H281DRAFT_00506 +0.7 0.7 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_01689 +0.7 1.5 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_06510 +0.7 1.1 methyl-accepting chemotaxis protein compare
H281DRAFT_05887 +0.7 1.2 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03358 +0.7 3.9 TRAP transporter, DctM subunit compare
H281DRAFT_01114 +0.7 1.6 deoxynucleoside transporter, substrate-binding component (from data) compare
H281DRAFT_02460 +0.7 1.8 hypothetical protein compare
H281DRAFT_01244 +0.7 0.6 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_01290 +0.7 1.9 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
H281DRAFT_06478 +0.7 2.1 succinylornithine aminotransferase apoenzyme compare
H281DRAFT_03418 +0.7 1.4 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_05642 +0.7 1.9 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_03809 +0.7 1.6 transcriptional regulator, LysR family compare
H281DRAFT_02245 +0.7 4.5 transcriptional regulator, LysR family compare
H281DRAFT_03234 +0.7 1.4 chemotaxis protein MotA compare
H281DRAFT_00419 +0.7 1.2 transcriptional regulator, LacI family compare
H281DRAFT_04170 +0.7 3.2 multidrug efflux pump compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Sodium adipate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium adipate across organisms