Experiment set7IT055 for Marinobacter adhaerens HP15

Compare to:

marine broth with Sisomicin sulfate salt 0.008 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
HP15_3534 +3.7 4.8 conserved hypothetical protein, membrane compare
HP15_2424 +3.7 7.9 AFG1-family ATPase compare
HP15_213 +3.5 13.0 cytochrome c5 compare
HP15_p42g17 +3.4 13.7 traN-like protein compare
HP15_300 +3.2 13.6 ribonuclease PH compare
HP15_3781 +3.1 23.4 electron transport protein SCO1/SenC compare
HP15_2101 +3.0 11.9 membrane protein containing cytochrome c assembly protein, transmembrane region domain compare
HP15_3121 +2.9 16.0 malate:quinone oxidoreductase compare
HP15_2111 +2.7 9.6 iron-sulfur cluster-binding protein compare
HP15_1225 +2.5 7.2 oxidoreductase, short chain dehydrogenase/reductase family compare
HP15_1733 +2.4 3.2 conserved hypothetical protein compare
HP15_2442 +2.4 10.5 RNA polymerase, sigma 54 subunit, RpoN compare
HP15_1063 +2.4 3.8 protein containing DUF1315 compare
HP15_2415 +2.1 9.7 sensory box sensor histidine kinase/response regulator compare
HP15_1735 +2.0 5.8 ABC transporter, permease protein compare
HP15_2699 +2.0 5.2 phenylacetate-CoA oxygenase, PaaI subunit compare
HP15_2697 +1.9 6.6 phenylacetate-CoA oxygenase, PaaG subunit compare
HP15_2478 +1.9 10.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
HP15_435 +1.9 9.5 glutamate-ammonia-ligase adenylyltransferase compare
HP15_2491 +1.9 11.2 kinase compare
HP15_328 +1.9 3.2 two component, sigma54 specific, transcriptional regulator, Fis family compare
HP15_3211 +1.9 3.4 5-formyltetrahydrofolate cyclo-ligase compare
HP15_1268 +1.8 6.7 thioredoxin compare
HP15_260 +1.8 12.0 hydrolase, alpha/beta fold family protein compare
HP15_1734 +1.8 4.7 ABC-type multidrug transport system, ATPase component compare
HP15_2701 +1.8 6.4 phenylacetic acid degradation oxidoreductase PaaK compare
HP15_491 +1.7 3.1 transcriptional repressor NrdR compare
HP15_329 +1.5 4.7 two-component sensor compare
HP15_2266 +1.5 7.0 rRNA (guanine-N(2)-)-methyltransferase conserved
HP15_2698 +1.5 3.9 phenylacetate-CoA oxygenase, PaaH subunit compare
HP15_857 +1.4 6.5 sodium-dependent transporter family protein compare
HP15_p42g15 +1.4 3.1 KfrA protein compare
HP15_1175 +1.3 3.2 outer membrane chaperone Skp (OmpH) compare
HP15_1834 +1.3 3.8 protein containing 3-isopropylmalate dehydratase, large subunit region domain compare
HP15_3981 +1.3 5.1 two component transcriptional regulator, Fis family compare
HP15_1318 +1.2 5.6 RDD domain containing protein compare
HP15_2408 +1.2 3.5 methylation site containing protein compare
HP15_1832 +1.1 3.5 3-isopropylmalate dehydrogenase compare
HP15_2700 +1.1 2.5 phenylacetate-CoA oxygenase, PaaJ subunit compare
HP15_2512 +1.1 5.8 tRNA synthetase, class II (D, K and N) compare
HP15_3982 +1.1 7.7 sensor signal transduction histidine kinase-like protein compare
HP15_514 +1.1 1.7 peptidylprolyl isomerase, FKBP-type compare
HP15_1833 +1.1 2.5 isopropylmalate isomerase small subunit compare
HP15_2514 +1.1 4.6 lysine 2,3-aminomutase YodO family protein compare
HP15_220 +1.1 3.0 disulfide bond formation protein B compare
HP15_527 +1.1 3.8 pseudouridine synthase, RluA family compare
HP15_1280 +1.0 2.1 protein-L-isoaspartate (D-aspartate) O-methyltransferase compare
HP15_3288 +1.0 4.8 anthranilate synthase component I compare
HP15_2702 +1.0 5.3 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase compare
HP15_463 +1.0 6.0 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein compare
HP15_1931 +1.0 4.4 2-methylcitrate synthase/citrate synthase II compare
HP15_330 +1.0 4.7 conserved hypothetical protein, membrane compare
HP15_4130 +1.0 2.3 molybdopterin-guanine dinucleotide biosynthesis protein A compare
HP15_3065 +0.9 5.3 tRNA pseudouridine synthase B compare
HP15_429 +0.9 5.9 GTP-binding protein TypA compare
HP15_462 +0.9 3.7 dinucleoside polyphosphate hydrolase compare
HP15_2277 +0.9 2.4 TPR repeat protein compare
HP15_p42g2 +0.9 3.1 single strand DNA binding protein compare
HP15_907 +0.9 5.2 acyl-CoA dehydrogenase domain protein compare
HP15_1550 +0.9 1.5 protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family protein compare
HP15_2093 +0.9 6.5 signal transduction histidine kinase compare
HP15_2528 +0.9 1.8 hypothetical protein compare
HP15_3031 +0.9 4.4 L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT (from data) compare
HP15_p42g14 +0.8 2.6 hypothetical protein compare
HP15_1829 +0.8 5.5 tRNA pseudouridine synthase A compare
HP15_1626 +0.8 1.2 conserved hypothetical protein compare
HP15_860 +0.8 4.9 transcriptional regulator, AsnC family protein compare
HP15_1596 +0.8 4.5 D-amino acid dehydrogenase 2 small subunit compare
HP15_223 +0.8 2.3 peptidylprolyl isomerase, FKBP-type compare
HP15_588 +0.8 4.8 DEAD/DEAH box helicase domain protein compare
HP15_3554 +0.8 1.3 carboxyl-terminal protease-like protein compare
HP15_2074 +0.8 2.0 carbon-nitrogen hydrolase family protein compare
HP15_3289 +0.8 3.9 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II compare
HP15_2026 +0.8 1.6 lipoprotein compare
HP15_3736 +0.7 3.1 protein containing alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen/ peroxiredoxin, C-terminal compare
HP15_3929 +0.7 5.1 acyl-CoA dehydrogenase domain protein compare
HP15_2451 +0.7 2.5 ribonuclease, Rne/Rng family compare
HP15_3195 +0.7 3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
HP15_2660 +0.7 1.8 Citrate uptake transporter, small transmembrane component TctB (from data) compare
HP15_1614 +0.7 2.6 conserved hypothetical protein compare
HP15_4116 +0.7 1.0 SirA-like protein compare
HP15_861 +0.7 1.0 cold shock, CspA compare
HP15_3407 +0.7 4.7 thiamine biosynthesis protein compare
HP15_2178 +0.7 3.3 6-phosphogluconolactonase compare
HP15_2914 +0.7 3.7 protein containing Methyltransferase type 11 domain compare
HP15_1783 +0.7 2.4 hypothetical protein compare
HP15_858 +0.7 4.1 phenylalanine aminotransferase (EC 2.6.1.57) (from data) compare
HP15_722 +0.7 4.4 TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data) compare
HP15_704 +0.7 1.9 translation-associated GTPase compare
HP15_4077 +0.7 2.4 conserved hypothetical protein compare
HP15_2267 +0.7 1.2 hypothetical protein compare
HP15_652 +0.7 1.5 conserved hypothetical protein compare
HP15_1323 +0.7 1.8 hypothetical protein compare
HP15_2024 +0.6 3.7 conserved hypothetical protein, secreted compare
HP15_3983 +0.6 2.3 hypothetical protein compare
HP15_p42g16 +0.6 1.7 conjugal transfer protein TraO compare
HP15_2000 +0.6 1.1 conserved hypothetical protein compare
HP15_719 +0.6 4.0 alpha-L-glutamate ligase, RimK family compare
HP15_3941 +0.6 3.6 fatty oxidation complex alpha subunit compare
HP15_531 +0.6 2.9 acetolactate synthase, large subunit, biosynthetic type compare
HP15_1647 +0.6 1.4 DoxX compare
HP15_p187g96 +0.6 1.2 hypothetical protein compare
HP15_1223 +0.6 1.4 protein YaaA compare
HP15_906 +0.6 4.2 methylmalonate-semialdehyde dehydrogenase compare
HP15_3203 +0.6 4.2 proline aminopeptidase P II compare
HP15_859 +0.6 4.4 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data) compare
HP15_3928 +0.6 3.2 acyl-CoA dehydrogenase domain protein compare
HP15_2271 +0.6 3.3 protein containing DUF58 compare
HP15_1804 +0.6 3.9 generic methyl-transferase compare
HP15_725 +0.6 4.1 two component, sigma54 specific, transcriptional regulator, Fis family compare
HP15_p187g1 +0.6 1.4 repeat-containing protein compare
HP15_1539 +0.6 1.2 CBS domain containing protein compare
HP15_892 +0.6 2.7 uncharacterized conserved protein UCP029543 compare
HP15_3510 +0.6 2.6 transcriptional regulator compare
HP15_1363 +0.6 1.0 histidinol-phosphate aminotransferase compare
HP15_208 +0.6 2.7 bacterioferritin compare
HP15_3811 +0.6 0.8 conserved hypothetical protein compare
HP15_3075 +0.6 2.3 RNA-binding, CRM domain, prokaryote compare
HP15_44 +0.6 1.5 DitK protein compare
HP15_603 +0.6 1.4 Iojap-related protein compare
HP15_1151 +0.6 2.6 conserved hypothetical protein compare
HP15_1006 +0.6 2.4 transcriptional regulator, MerR family compare
HP15_2081 +0.6 2.9 ATP-dependent Clp protease adaptor protein ClpS compare
HP15_3733 +0.6 0.7 hypothetical protein compare
HP15_p42g18 +0.6 3.3 traM-like protein compare
HP15_1792 +0.6 3.9 B12-dependent methionine synthase compare
HP15_420 +0.5 1.8 type II secretory pathway, pseudopilin PulG compare
HP15_2 +0.5 1.3 acyl-CoA dehydrogenase domain protein compare
HP15_724 +0.5 3.5 periplasmic sensor signal transduction histidine kinase compare
HP15_231 +0.5 0.7 thiamineS compare
HP15_746 +0.5 2.2 two component transcriptional regulator, winged helix family compare
HP15_137 +0.5 0.6 hypothetical protein compare
HP15_783 +0.5 1.7 conserved hypothetical protein compare
HP15_2077 +0.5 2.3 leucyl/phenylalanyl-tRNA-protein transferase compare
HP15_2062 +0.5 2.2 YcaR-like protein compare
HP15_356 +0.5 0.5 anhydro-N-acetylmuramic acid kinase compare
HP15_1568 +0.5 1.6 excinuclease ABC subunit C compare
HP15_578 +0.5 1.8 molybdenum cofactor biosynthesis protein C compare
HP15_3747 +0.5 2.9 Sua5/YciO/YrdC/YwlC family protein compare
HP15_1065 +0.5 3.6 aminopeptidase N compare
HP15_4057 +0.5 1.8 protein containing rhodanese-like domains compare
HP15_2333 +0.5 2.8 conserved hypothetical protein compare
HP15_1449 +0.5 2.1 ABC transporter, ATP-binding protein compare
HP15_776 +0.5 1.7 sigma factor algU negative regulatory protein MucA compare
HP15_3133 +0.5 1.9 conserved hypothetical protein compare
HP15_3310 +0.5 2.2 pirin family protein compare
HP15_908 +0.5 0.8 enoyl-CoA hydratase/isomerase compare
HP15_577 +0.5 1.3 mutator MutT protein compare
HP15_2202 +0.5 4.1 tRNA-(ms(2)io(6)a)-hydroxylase compare
HP15_655 +0.5 1.9 phage tail collar domain protein-like protein compare
HP15_232 +0.5 3.0 molybdenum cofactor synthesis domain protein compare
HP15_1295 +0.5 1.1 protein containing DUF416 compare
HP15_2452 +0.5 1.5 Maf-like protein compare
HP15_2661 +0.5 1.4 Citrate uptake transporter, substrate-binding component TctC (from data) compare
HP15_3406 +0.5 0.8 hypothetical protein compare
HP15_3441 +0.5 1.9 OmpA/MotB domain protein compare
HP15_3906 +0.5 2.4 protein containing alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen / peroxiredoxin, C-terminal compare
HP15_946 +0.5 1.8 conserved hypothetical protein compare
HP15_532 +0.5 1.5 acetolactate synthase 3 regulatory subunit compare
HP15_614 +0.5 1.7 protein containing glutaredoxin domain compare
HP15_1346 +0.5 2.6 sulfate ABC transporter, inner membrane subunit CysW compare
HP15_1137 +0.5 1.9 helix-turn-helix domain containing protein, AraC type compare
HP15_604 +0.5 1.4 conserved hypothetical protein CHP00246 compare
HP15_2692 +0.5 2.3 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
HP15_3021 +0.5 1.2 glycolate oxidase iron-sulfur subunit compare
HP15_1399 +0.5 2.7 metal-dependent hydrolase-like protein compare
HP15_3777 +0.5 2.0 conserved hypothetical protein compare
HP15_599 +0.5 2.3 membrane protein containing Diguanylate cyclase, predicted domains compare
HP15_2493 +0.5 1.9 methyltransferase compare
HP15_128 +0.5 1.5 conserved hypothetical protein compare
HP15_4135 +0.5 3.0 binding-protein-dependent transport systems inner membrane component compare
HP15_427 +0.5 2.4 conserved hypothetical protein, secreted compare
HP15_3225 +0.5 2.9 tRNA-dihydrouridine synthase B compare
HP15_4119 +0.5 2.6 4Fe-4S ferredoxin, iron-sulfur binding domain protein compare
HP15_127 +0.5 0.8 hypothetical protein compare
HP15_1615 +0.4 2.9 TonB-dependent receptor, plug compare
HP15_2825 +0.4 1.1 conserved hypothetical protein compare
HP15_3931 +0.4 1.9 hypothetical protein compare
HP15_1966 +0.4 0.6 head-to-tail joining protein W, GpW compare
HP15_1156 +0.4 1.9 conserved hypothetical protein compare
HP15_2972 +0.4 0.9 cyclic nucleotide-binding protein compare
HP15_498 +0.4 1.9 thiolase-like protein compare
HP15_1781 +0.4 0.8 beta-lactamase hydrolase-like protein compare
HP15_2410 +0.4 1.8 type IV pilus biogenesis protein PilC compare
HP15_1008 +0.4 2.2 acyl-CoA dehydrogenase domain protein compare
HP15_2730 +0.4 2.1 mechanosensitive ion channel family protein compare
HP15_1079 +0.4 0.7 conserved hypothetical protein, membrane compare
HP15_2742 +0.4 1.8 protein containing prepilin-type cleavage/methylation, N-terminal domains compare
HP15_3607 +0.4 3.1 DEAD/DEAH box helicase domain protein compare
HP15_3629 +0.4 2.4 conserved hypothetical protein compare
HP15_2708 +0.4 2.6 transcriptional regulator, PaaX family compare
HP15_2495 +0.4 2.5 tRNA synthetase, class II (G, H, P and S) compare
HP15_3023 +0.4 2.2 glycolate oxidase FAD binding subunit compare
HP15_1653 +0.4 1.7 protein containing DUF1348 compare
HP15_3032 +0.4 2.6 amino acid ABC transporter, inner membrane subunit compare
HP15_1395 +0.4 2.2 heat shock protein 90 compare
HP15_2225 +0.4 1.6 YciI-like protein compare
HP15_1311 +0.4 1.8 ATP-cobalamin adenosyltransferase compare
HP15_600 +0.4 2.2 GGDEF domain protein compare
HP15_3504 +0.4 1.9 histone-like bacterial DNA-binding protein compare


Specific Phenotypes

For 10 genes in this experiment

For stress Sisomicin sulfate salt in Marinobacter adhaerens HP15

For stress Sisomicin sulfate salt across organisms