Experiment set7IT055 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00760 -3.9 -6.6 envelope stress response regulator transcription factor CpxR compare
IAI47_11420 -3.8 -1.8 hypothetical protein compare
IAI47_05070 -3.3 -1.0 outer membrane protein assembly factor BamB compare
IAI47_08105 -3.3 -2.2 DinI family protein compare
IAI47_16085 -3.1 -2.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_06965 -3.1 -2.2 glycosyltransferase family 2 protein compare
IAI47_20595 -2.9 -4.9 GhoT/OrtT family toxin compare
IAI47_11415 -2.8 -1.6 hypothetical protein compare
IAI47_15970 -2.7 -3.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_13695 -2.7 -0.8 colicin uptake protein TolR compare
IAI47_00300 -2.7 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_08440 -2.6 -2.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_08085 -2.5 -5.2 helix-turn-helix domain-containing protein compare
IAI47_07480 -2.4 -2.5 hypothetical protein compare
IAI47_18215 -2.2 -1.8 Trk system potassium transporter TrkH compare
IAI47_16995 -2.1 -2.1 protein YrbN compare
IAI47_09635 -2.1 -4.8 hypothetical protein compare
IAI47_11480 -2.1 -2.3 hypothetical protein compare
IAI47_11360 -2.0 -2.5 hypothetical protein compare
IAI47_10835 -2.0 -0.8 tRNA-Val compare
IAI47_11475 -2.0 -0.8 hypothetical protein compare
IAI47_18830 -1.9 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00465 -1.9 -1.8 ribosome-dependent GTPase TypA compare
IAI47_01365 -1.8 -2.1 inorganic phosphate transporter PitA compare
IAI47_00460 -1.8 -2.4 glutamate--ammonia ligase compare
IAI47_10430 -1.8 -2.4 hypothetical protein compare
IAI47_05155 -1.7 -12.1 polyphosphate kinase 1 compare
IAI47_03375 -1.7 -8.6 peptide chain release factor 3 compare
IAI47_12920 -1.6 -3.4 thioredoxin-disulfide reductase compare
IAI47_04300 -1.6 -6.2 recombinase RecA compare
IAI47_02345 -1.6 -1.4 5S ribosomal RNA compare
IAI47_14730 -1.6 -1.1 exodeoxyribonuclease VII small subunit compare
IAI47_08605 -1.6 -2.9 hypothetical protein compare
IAI47_05525 -1.6 -1.4 tRNA-Ala compare
IAI47_11655 -1.6 -2.2 hypothetical protein compare
IAI47_06655 -1.5 -3.4 1-phosphofructokinase compare
IAI47_07930 -1.5 -1.2 DUF2158 domain-containing protein compare
IAI47_13750 -1.4 -3.3 succinate dehydrogenase iron-sulfur subunit compare
IAI47_08680 -1.4 -5.4 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_21235 -1.4 -1.6 hypothetical protein compare
IAI47_09380 -1.4 -5.1 peptide ABC transporter substrate-binding protein SapA compare
IAI47_20250 -1.4 -2.3 DeoR family transcriptional regulator compare
IAI47_19825 -1.4 -5.5 EAL domain-containing protein compare
IAI47_19295 -1.4 -2.1 hypothetical protein compare
IAI47_13050 -1.3 -3.2 YbjN domain-containing protein compare
IAI47_04705 -1.3 -1.1 hypothetical protein compare
IAI47_07905 -1.3 -0.5 Arc family DNA-binding protein compare
IAI47_05080 -1.3 -3.0 zinc ribbon domain-containing protein compare
IAI47_07490 -1.3 -1.9 DNA-binding protein compare
IAI47_18145 -1.3 -2.3 elongation factor Tu compare
IAI47_02260 -1.3 -5.3 Zn(2+)-responsive transcriptional regulator compare
IAI47_07355 -1.2 -4.9 winged helix-turn-helix domain-containing protein compare
IAI47_00780 -1.2 -3.2 6-phosphofructokinase compare
IAI47_07485 -1.2 -3.2 DUF4756 family protein compare
IAI47_19935 -1.2 -3.2 hypothetical protein compare
IAI47_11445 -1.2 -3.7 ankyrin repeat domain-containing protein compare
IAI47_11375 -1.2 -1.0 hypothetical protein compare
IAI47_21155 -1.2 -2.7 IS6 family transposase compare
IAI47_14200 -1.2 -3.6 hypothetical protein compare
IAI47_12270 -1.2 -5.1 YceK/YidQ family lipoprotein compare
IAI47_17120 -1.2 -2.7 BolA family iron metabolism protein IbaG compare
IAI47_15485 -1.2 -1.0 molecular chaperone Skp compare
IAI47_18240 -1.2 -2.4 NAD(P)H-flavin reductase compare
IAI47_04835 -1.2 -5.7 ATP-dependent RNA helicase SrmB compare
IAI47_19685 -1.2 -2.2 hypothetical protein compare
IAI47_19945 -1.2 -0.6 hypothetical protein compare
IAI47_14230 -1.1 -4.1 DotU family type IV/VI secretion system protein compare
IAI47_04865 -1.1 -1.6 SoxR-reducing system protein RseC compare
IAI47_17005 -1.1 -4.7 polyribonucleotide nucleotidyltransferase compare
IAI47_05660 -1.1 -4.7 serine protease compare
IAI47_01820 -1.1 -2.7 two-component system response regulator OmpR compare
IAI47_11470 -1.1 -2.3 IS1 family transposase compare
IAI47_18715 -1.1 -1.2 YibL family ribosome-associated protein compare
IAI47_06360 -1.1 -1.4 NADH-quinone oxidoreductase subunit A compare
IAI47_18900 -1.1 -5.1 VOC family protein compare
IAI47_19930 -1.1 -3.3 adhesin compare
IAI47_01825 -1.0 -3.8 two-component system sensor histidine kinase EnvZ compare
IAI47_21015 -1.0 -3.0 helix-turn-helix transcriptional regulator compare
IAI47_04335 -1.0 -2.3 tRNA-Arg compare
IAI47_15025 -1.0 -2.2 transcriptional regulator LldR compare
IAI47_17020 -1.0 -2.3 30S ribosome-binding factor RbfA compare
IAI47_03195 -1.0 -2.3 cell division protein FtsP compare
IAI47_07350 -1.0 -0.5 hypothetical protein compare
IAI47_14805 -1.0 -4.4 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_07520 -1.0 -5.7 MobA/MobL family protein compare
IAI47_03590 -1.0 -4.0 YggT family protein compare
IAI47_03440 -1.0 -2.2 general stress protein compare
IAI47_06010 -0.9 -3.4 hypothetical protein compare
IAI47_20400 -0.9 -3.1 DUF2132 domain-containing protein compare
IAI47_06135 -0.9 -2.4 phosphohistidine phosphatase SixA compare
IAI47_07025 -0.9 -3.2 glycosyltransferase family 4 protein compare
IAI47_00870 -0.9 -0.6 50S ribosomal protein L31 compare
IAI47_16095 -0.9 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_06900 -0.9 -1.9 phosphatase PAP2 family protein compare
IAI47_19320 -0.9 -3.6 LysE family translocator compare
IAI47_19950 -0.9 -4.1 SDR family oxidoreductase compare
IAI47_18400 -0.9 -1.5 tyrosine recombinase XerC compare
IAI47_07450 -0.9 -1.9 winged helix-turn-helix domain-containing protein compare
IAI47_12930 -0.9 -2.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_06325 -0.9 -3.3 acetate kinase compare
IAI47_07330 -0.9 -4.4 hypothetical protein compare
IAI47_14750 -0.9 -4.1 phosphatidylglycerophosphatase A compare
IAI47_12770 -0.9 -3.6 MBL fold metallo-hydrolase compare
IAI47_03820 -0.9 -2.3 site-specific tyrosine recombinase XerD compare
IAI47_05195 -0.9 -1.2 DnaA inactivator Hda compare
IAI47_20005 -0.9 -1.8 PTS sugar transporter subunit IIA compare
IAI47_21830 -0.9 -1.1 hypothetical protein compare
IAI47_10545 -0.9 -1.6 hypothetical protein compare
IAI47_21780 -0.9 -2.5 hypothetical protein compare
IAI47_18705 -0.9 -5.5 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_19940 -0.9 -1.7 hypothetical protein compare
IAI47_07030 -0.9 -3.2 HAD family hydrolase compare
IAI47_03550 -0.9 -5.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_19675 -0.8 -1.5 ParD-like family protein compare
IAI47_09360 -0.8 -0.6 peptide ABC transporter ATP-binding protein SapF compare
IAI47_04800 -0.8 -0.6 RnfH family protein compare
IAI47_21600 -0.8 -1.4 EamA family transporter compare
IAI47_09040 -0.8 -0.7 NAD-dependent epimerase compare
IAI47_12260 -0.8 -2.6 hypothetical protein compare
IAI47_10840 -0.8 -2.0 pyruvate kinase PykF compare
IAI47_01180 -0.8 -1.0 prolyl oligopeptidase family serine peptidase compare
IAI47_17790 -0.8 -4.1 transposase compare
IAI47_21115 -0.8 -1.8 arsenate reductase (glutaredoxin) compare
IAI47_07790 -0.8 -1.3 ribose 1,5-bisphosphokinase compare
IAI47_09245 -0.8 -1.9 YmiA family putative membrane protein compare
IAI47_09955 -0.8 -1.6 SDR family oxidoreductase compare
IAI47_12375 -0.8 -0.9 acyl carrier protein compare
IAI47_03680 -0.8 -5.1 transketolase compare
IAI47_21790 -0.8 -2.6 helix-turn-helix domain-containing protein compare
IAI47_02750 -0.8 -6.5 class 1 fructose-bisphosphatase compare
IAI47_16990 -0.8 -2.7 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00515 -0.8 -1.7 DNA-directed RNA polymerase subunit omega compare
IAI47_06120 -0.8 -1.9 YfcZ/YiiS family protein compare
IAI47_05915 -0.8 -2.8 minor capsid protein compare
IAI47_14170 -0.8 -1.8 hypothetical protein compare
IAI47_21385 -0.8 -2.7 DNA polymerase V subunit compare
IAI47_14205 -0.8 -2.8 hypothetical protein compare
IAI47_05795 -0.8 -2.7 hypothetical protein compare
IAI47_08615 -0.8 -2.5 phage baseplate assembly protein V compare
IAI47_10365 -0.8 -3.7 adenosine deaminase compare
IAI47_17185 -0.8 -3.5 RNA polymerase factor sigma-54 compare
IAI47_02040 -0.8 -4.0 peptidylprolyl isomerase compare
IAI47_20785 -0.8 -3.2 GNAT family N-acetyltransferase compare
IAI47_02600 -0.8 -5.1 FtsH protease activity modulator HflK compare
IAI47_00430 -0.8 -5.2 DNA polymerase I compare
IAI47_21270 -0.8 -3.7 ABC transporter permease subunit compare
IAI47_14980 -0.8 -2.4 hypothetical protein compare
IAI47_15765 -0.8 -3.2 YacL family protein compare
IAI47_04775 -0.8 -1.4 SIR2 family protein compare
IAI47_07700 -0.7 -2.0 EAL domain-containing protein compare
IAI47_15150 -0.7 -3.8 DUF3289 family protein compare
IAI47_04870 -0.7 -3.0 elongation factor 4 compare
IAI47_09630 -0.7 -2.6 type VI secretion system tube protein Hcp compare
IAI47_13355 -0.7 -4.2 DMT family transporter compare
IAI47_07515 -0.7 -1.9 hypothetical protein compare
IAI47_11545 -0.7 -1.5 hypothetical protein compare
IAI47_20415 -0.7 -4.0 two-component system response regulator DcuR compare
IAI47_19490 -0.7 -2.4 DUF4102 domain-containing protein compare
IAI47_05710 -0.7 -2.9 hypothetical protein compare
IAI47_10185 -0.7 -2.3 PTS sugar transporter subunit IIB compare
IAI47_07040 -0.7 -1.8 acyltransferase compare
IAI47_08450 -0.7 -1.5 Holliday junction branch migration DNA helicase RuvB compare
IAI47_09980 -0.7 -3.1 VOC family protein compare
IAI47_13725 -0.7 -2.7 cytochrome ubiquinol oxidase subunit I compare
IAI47_01875 -0.7 -1.9 hypothetical protein compare
IAI47_21495 -0.7 -3.6 hypothetical protein compare
IAI47_17645 -0.7 -1.8 hypothetical protein compare
IAI47_00770 -0.7 -0.5 general stress protein compare
IAI47_04695 -0.7 -2.1 hypothetical protein compare
IAI47_06585 -0.7 -3.2 16S rRNA pseudouridine(516) synthase RsuA compare
IAI47_09145 -0.7 -2.8 UPF0259 family protein compare
IAI47_04770 -0.7 -3.3 ATP-binding protein compare
IAI47_02990 -0.7 -3.8 hypothetical protein compare
IAI47_21680 -0.7 -1.8 hypothetical protein compare
IAI47_02605 -0.7 -3.8 protease modulator HflC compare
IAI47_14390 -0.7 -2.3 NfeD family protein compare
IAI47_04545 -0.7 -1.9 glutaredoxin-like protein NrdH compare
IAI47_02090 -0.7 -2.1 elongation factor Tu compare
IAI47_10025 -0.7 -3.0 DUF1792 domain-containing protein compare
IAI47_01345 -0.7 -4.2 oligopeptidase A compare
IAI47_18420 -0.7 -4.2 class I adenylate cyclase compare
IAI47_08555 -0.7 -3.5 tail fiber assembly protein compare
IAI47_11150 -0.7 -1.7 D-threitol dehydrogenase compare
IAI47_12925 -0.7 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_20830 -0.7 -2.5 DUF2000 domain-containing protein compare
IAI47_14290 -0.7 -2.6 type VI secretion system contractile sheath small subunit compare
IAI47_10850 -0.7 -3.4 L,D-transpeptidase family protein compare
IAI47_10470 -0.7 -1.0 electron transport complex subunit E compare
IAI47_13990 -0.6 -3.2 zinc ribbon-containing protein compare
IAI47_07525 -0.6 -1.1 conjugal transfer protein TraD compare
IAI47_20480 -0.6 -2.9 YfiR family protein compare
IAI47_02890 -0.6 -3.6 EnvZ/OmpR regulon moderator MzrA compare
IAI47_05690 -0.6 -2.0 hypothetical protein compare
IAI47_18775 -0.6 -2.7 hypothetical protein compare
IAI47_14885 -0.6 -2.8 hypothetical protein compare
IAI47_11870 -0.6 -1.4 DUF2767 family protein compare
IAI47_21240 -0.6 -2.5 hypothetical protein compare
IAI47_14325 -0.6 -0.7 ribosome-associated protein YbcJ compare
IAI47_20680 -0.6 -2.3 hypothetical protein compare
IAI47_21355 -0.6 -1.3 DUF3606 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms