Experiment set7IT055 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01632 +1.9 15.8 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01633 +1.5 6.9 hypothetical protein compare
H281DRAFT_02595 +1.4 4.2 transcriptional regulator, GntR family compare
H281DRAFT_00819 +1.3 2.1 competence protein ComEA compare
H281DRAFT_00298 +1.3 2.0 hypothetical protein compare
H281DRAFT_03611 +1.2 1.9 hopanoid-associated phosphorylase compare
H281DRAFT_03094 +1.2 2.0 transcriptional regulator, MarR family compare
H281DRAFT_04858 +1.1 1.7 hypothetical protein compare
H281DRAFT_05755 +1.1 1.6 flagellar biosynthesis protein FlhG compare
H281DRAFT_00989 +1.0 3.1 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_05984 +1.0 2.3 conserved hypothetical protein compare
H281DRAFT_05561 +1.0 5.4 transcriptional regulator, TetR family compare
H281DRAFT_01108 +0.9 1.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05974 +0.9 1.7 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01042 +0.9 2.3 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_01681 +0.9 1.8 Acyl dehydratase compare
H281DRAFT_00348 +0.9 1.4 membrane fusion protein, multidrug efflux system compare
H281DRAFT_03849 +0.9 2.9 protein of unknown function (DUF4863) compare
H281DRAFT_02574 +0.9 3.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01284 +0.9 2.1 transcriptional regulator, LysR family compare
H281DRAFT_04201 +0.9 1.1 O-antigen ligase compare
H281DRAFT_02007 +0.9 7.1 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_00106 +0.8 2.2 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01480 +0.8 1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01827 +0.8 1.4 hypothetical protein compare
H281DRAFT_03815 +0.8 2.9 D-glucarate dehydratase compare
H281DRAFT_00997 +0.8 2.2 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_01033 +0.8 1.4 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02510 +0.8 3.1 Short-chain dehydrogenase compare
H281DRAFT_06320 +0.8 3.0 biopolymer transport protein ExbD compare
H281DRAFT_06135 +0.8 1.5 hypothetical protein compare
H281DRAFT_03748 +0.8 2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04713 +0.8 4.1 membrane-associated protein compare
H281DRAFT_00645 +0.7 2.4 hypothetical protein compare
H281DRAFT_02718 +0.7 1.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00240 +0.7 5.2 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03184 +0.7 1.1 cation diffusion facilitator family transporter compare
H281DRAFT_03873 +0.7 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_05807 +0.7 5.9 hypothetical protein compare
H281DRAFT_06220 +0.7 1.3 hypothetical protein compare
H281DRAFT_01052 +0.7 1.6 hypothetical protein compare
H281DRAFT_03864 +0.7 2.6 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_04171 +0.7 4.1 membrane fusion protein, multidrug efflux system compare
H281DRAFT_00991 +0.7 3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_03655 +0.7 5.1 hypothetical protein compare
H281DRAFT_05861 +0.7 3.1 16S rRNA. Bacterial SSU compare
H281DRAFT_00469 +0.7 3.0 phasin family protein compare
H281DRAFT_00406 +0.7 2.2 Signal transduction histidine kinase compare
H281DRAFT_03717 +0.7 1.5 Rhodanese-related sulfurtransferase compare
H281DRAFT_00426 +0.7 2.2 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_05430 +0.7 1.7 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_01125 +0.7 1.6 protein of unknown function (DUF2760) compare
H281DRAFT_03324 +0.7 2.2 Low affinity Fe/Cu permease compare
H281DRAFT_03299 +0.7 1.6 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_01806 +0.7 2.8 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_01304 +0.7 1.2 formaldehyde activating enzyme compare
H281DRAFT_05993 +0.7 1.3 Kynureninase compare
H281DRAFT_06056 +0.7 5.0 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03674 +0.7 2.0 hypothetical protein compare
H281DRAFT_02459 +0.7 1.8 sarcosine oxidase subunit gamma compare
H281DRAFT_06506 +0.7 1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01607 +0.7 3.6 serine protease, S1-C subfamily, contains C-terminal PDZ domain compare
H281DRAFT_02441 +0.7 1.2 putative ABC transport system ATP-binding protein compare
H281DRAFT_01935 +0.7 3.7 Tetratricopeptide repeat-containing protein compare
H281DRAFT_04800 +0.7 1.8 protein SCO1/2 compare
H281DRAFT_04008 +0.7 1.7 RNAse PH compare
H281DRAFT_06462 +0.7 1.0 hypothetical protein compare
H281DRAFT_01220 +0.7 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05000 +0.7 1.5 ATP synthase in type III secretion protein N compare
H281DRAFT_05286 +0.7 1.7 transcriptional regulator, LysR family compare
H281DRAFT_00419 +0.7 1.9 transcriptional regulator, LacI family compare
H281DRAFT_03454 +0.7 2.2 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_05313 +0.7 4.0 Polygalacturonase compare
H281DRAFT_00690 +0.7 2.5 NADPH:quinone reductase compare
H281DRAFT_01621 +0.7 0.6 transcriptional regulator, AraC family compare
H281DRAFT_05315 +0.7 1.2 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_00231 +0.7 2.3 hypothetical protein compare
H281DRAFT_01919 +0.6 2.9 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_00759 +0.6 1.8 sulfonate transport system permease protein compare
H281DRAFT_00848 +0.6 1.4 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_03103 +0.6 2.4 hypothetical protein compare
H281DRAFT_06079 +0.6 1.9 Uncharacterized membrane protein, DUF373 family compare
H281DRAFT_01105 +0.6 2.5 transcriptional regulator, AraC family compare
H281DRAFT_03108 +0.6 1.4 hypothetical protein compare
H281DRAFT_06190 +0.6 0.7 DNA-binding protein H-NS compare
H281DRAFT_04536 +0.6 2.2 protein of unknown function (DUF4126) compare
H281DRAFT_01006 +0.6 3.0 Fatty acid hydroxylase superfamily protein compare
H281DRAFT_01367 +0.6 2.5 Protein of unknown function (DUF2891) compare
H281DRAFT_06367 +0.6 1.3 pilus assembly protein CpaE compare
H281DRAFT_01474 +0.6 0.6 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_03859 +0.6 3.6 hypothetical protein compare
H281DRAFT_03620 +0.6 1.3 acylphosphatase compare
H281DRAFT_05943 +0.6 1.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_00353 +0.6 2.7 G/U mismatch-specific uracil-DNA glycosylase compare
H281DRAFT_05468 +0.6 1.8 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_00721 +0.6 1.3 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase compare
H281DRAFT_03034 +0.6 2.8 xanthine dehydrogenase YagT iron-sulfur-binding subunit compare
H281DRAFT_01246 +0.6 0.9 hypothetical protein compare
H281DRAFT_01273 +0.6 2.8 feruloyl esterase compare
H281DRAFT_04562 +0.6 1.7 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_03860 +0.6 1.5 hypothetical protein compare
H281DRAFT_01049 +0.6 1.2 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_05216 +0.6 2.4 Protein of unknown function (DUF3022) compare
H281DRAFT_02292 +0.6 2.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_04837 +0.6 4.6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_03858 +0.6 1.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06134 +0.6 1.1 hypothetical protein compare
H281DRAFT_06108 +0.6 1.3 hypothetical protein compare
H281DRAFT_03725 +0.6 1.7 hypothetical protein compare
H281DRAFT_04835 +0.6 1.3 hypothetical protein compare
H281DRAFT_01734 +0.6 2.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_00154 +0.6 4.8 autotransporter secretion inner membrane protein TamB compare
H281DRAFT_04050 +0.6 1.3 beta-aspartyl-peptidase (threonine type) compare
H281DRAFT_05646 +0.6 0.9 hypothetical protein compare
H281DRAFT_01139 +0.6 1.3 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit compare
H281DRAFT_06036 +0.6 2.1 Membrane-associated phospholipid phosphatase compare
H281DRAFT_06285 +0.6 1.1 3-dehydroquinate dehydratase compare
H281DRAFT_00050 +0.6 0.8 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_01287 +0.6 1.0 mxaK protein compare
H281DRAFT_06532 +0.6 2.8 protein of unknown function (DUF4136) compare
H281DRAFT_04773 +0.6 2.0 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_06177 +0.6 2.6 hypothetical protein compare
H281DRAFT_02683 +0.6 0.9 xanthine dehydrogenase accessory factor compare
H281DRAFT_03234 +0.6 2.4 chemotaxis protein MotA compare
H281DRAFT_06556 +0.6 1.5 hypothetical protein compare
H281DRAFT_06576 +0.6 2.1 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_03313 +0.6 3.1 hypothetical protein compare
H281DRAFT_04150 +0.6 1.1 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04229 +0.6 4.2 glycerol kinase compare
H281DRAFT_00773 +0.6 1.8 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_01396 +0.6 1.7 hypothetical protein compare
H281DRAFT_04779 +0.6 1.6 colanic acid biosynthesis glycosyl transferase WcaI compare
H281DRAFT_05502 +0.6 1.2 transketolase subunit B compare
H281DRAFT_05110 +0.6 1.8 transcriptional regulator, MarR family compare
H281DRAFT_03433 +0.6 2.3 Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_02548 +0.5 1.3 Uncharacterized membrane protein YoaK, UPF0700 family compare
H281DRAFT_04094 +0.5 3.0 peptide/nickel transport system ATP-binding protein compare
H281DRAFT_01227 +0.5 1.6 L-rhamnose 1-dehydrogenase compare
H281DRAFT_02741 +0.5 1.3 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01353 +0.5 3.1 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_03713 +0.5 1.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06453 +0.5 1.4 Protein required for attachment to host cells compare
H281DRAFT_01366 +0.5 2.0 hypothetical protein compare
H281DRAFT_05382 +0.5 1.8 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_05183 +0.5 1.5 putrescine transport system permease protein compare
H281DRAFT_02709 +0.5 1.5 GntR family transcriptional regulator compare
H281DRAFT_05964 +0.5 1.7 D-galactonate transporter compare
H281DRAFT_00148 +0.5 2.3 chromosome partitioning protein compare
H281DRAFT_05610 +0.5 1.3 hypothetical protein compare
H281DRAFT_02700 +0.5 1.6 feruloyl esterase compare
H281DRAFT_02662 +0.5 0.9 Predicted xylanase/chitin deacetylase compare
H281DRAFT_06025 +0.5 1.8 chromate transporter compare
H281DRAFT_05158 +0.5 2.2 putative urate catabolism protein compare
H281DRAFT_02940 +0.5 1.1 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_02556 +0.5 1.2 Outer membrane protein (porin) compare
H281DRAFT_05192 +0.5 1.2 phage shock protein A (PspA) family protein compare
H281DRAFT_05892 +0.5 1.2 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_01412 +0.5 1.1 Superinfection immunity protein compare
H281DRAFT_03064 +0.5 2.1 Uncharacterized conserved protein compare
H281DRAFT_05071 +0.5 1.2 ammonium transporter compare
H281DRAFT_03252 +0.5 1.0 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-) compare
H281DRAFT_04873 +0.5 1.5 histidine ammonia-lyase compare
H281DRAFT_02058 +0.5 0.8 cholesterol transport system auxiliary component compare
H281DRAFT_00666 +0.5 1.8 altronate hydrolase compare
H281DRAFT_06507 +0.5 2.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03843 +0.5 1.7 Phenylpropionate dioxygenase, large terminal subunit compare
H281DRAFT_01222 +0.5 1.0 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_01071 +0.5 0.8 muconolactone delta-isomerase (EC 5.3.3.4) compare
H281DRAFT_05276 +0.5 2.1 malonate decarboxylase epsilon subunit compare
H281DRAFT_04746 +0.5 1.3 D-lactate dehydrogenase compare
H281DRAFT_02643 +0.5 0.9 hypothetical protein compare
H281DRAFT_01821 +0.5 1.1 Predicted lipid-binding transport protein, Tim44 family compare
H281DRAFT_01524 +0.5 2.7 D-methionine transport system substrate-binding protein compare
H281DRAFT_00397 +0.5 1.3 GreA/GreB family elongation factor compare
H281DRAFT_01684 +0.5 2.4 transcriptional regulator, TetR family compare
H281DRAFT_01413 +0.5 0.9 hypothetical protein compare
H281DRAFT_00687 +0.5 1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_01476 +0.5 1.7 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_00522 +0.5 1.6 GTP-binding protein HflX compare
H281DRAFT_03498 +0.5 2.0 hypothetical protein compare
H281DRAFT_04840 +0.5 3.0 Uncharacterized protein conserved in bacteria compare
H281DRAFT_05012 +0.5 0.9 hypothetical protein compare
H281DRAFT_05962 +0.5 0.7 RraA famliy compare
H281DRAFT_00747 +0.5 1.9 tRNA_Met_CAT compare
H281DRAFT_04369 +0.5 1.6 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_06388 +0.5 0.8 Sugar phosphate permease compare
H281DRAFT_04933 +0.5 0.9 Nitroreductase compare
H281DRAFT_01093 +0.5 2.0 transcriptional regulator, winged helix family compare
H281DRAFT_01329 +0.5 2.3 prolyl aminopeptidase (EC:3.4.11.5). Serine peptidase. MEROPS family S33 compare
H281DRAFT_02903 +0.5 1.4 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_04203 +0.5 3.4 integral membrane protein, YjbE family compare
H281DRAFT_05366 +0.5 2.8 type VI secretion system protein ImpF compare
H281DRAFT_00769 +0.5 1.4 hypothetical protein compare
H281DRAFT_06052 +0.5 3.5 maltooligosyl trehalose hydrolase compare
H281DRAFT_02552 +0.5 1.6 hypothetical protein compare
H281DRAFT_01417 +0.5 1.2 anti-sigma-28 factor, FlgM family compare
H281DRAFT_06490 +0.5 1.0 hypothetical protein compare
H281DRAFT_01351 +0.5 1.3 hypothetical protein compare
H281DRAFT_01429 +0.5 1.4 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_03120 +0.5 1.7 putative spermidine/putrescine transport system permease protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium succinate dibasic hexahydrate across organisms