Experiment set7IT054 for Pseudomonas fluorescens SBW25-INTG

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PFLU_RS28645 -7.6 -12.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29065 -4.8 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS30345 -4.1 -2.8 DUF2559 family protein compare
PFLU_RS31590 -3.5 -2.7 hypothetical protein compare
PFLU_RS26735 -3.5 -9.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS06055 -3.4 -2.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS20290 -3.4 -1.8 integration host factor subunit alpha compare
PFLU_RS28310 -3.2 -2.7 response regulator compare
PFLU_RS14805 -3.2 -2.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS23070 -3.0 -1.3 50S ribosomal protein L32 compare
PFLU_RS25815 -2.8 -1.7 transcription termination/antitermination protein NusA compare
PFLU_RS07275 -2.8 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18885 -2.8 -2.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS18625 -2.6 -4.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS13665 -2.6 -1.9 MarR family transcriptional regulator compare
PFLU_RS31290 -2.6 -2.1 EamA family transporter compare
PFLU_RS08125 -2.6 -1.8 integration host factor subunit beta compare
PFLU_RS01315 -2.5 -1.7 Hsp33 family molecular chaperone HslO compare
PFLU_RS08155 -2.5 -4.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS21315 -2.4 -9.9 GTP cyclohydrolase I FolE compare
PFLU_RS18635 -2.4 -2.8 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS03610 -2.4 -4.2 redox-regulated ATPase YchF compare
PFLU_RS18655 -2.3 -1.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS25755 -2.2 -4.8 pantoate--beta-alanine ligase compare
PFLU_RS24125 -2.2 -6.3 cold-shock protein compare
PFLU_RS09055 -2.2 -7.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS30160 -2.1 -3.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25865 -2.1 -3.1 YhbY family RNA-binding protein compare
PFLU_RS13010 -2.1 -4.7 Fe-S biogenesis protein NfuA compare
PFLU_RS18955 -2.1 -9.9 hydroxymethylglutaryl-CoA lyase compare
PFLU_RS25200 -2.0 -8.5 protoheme IX farnesyltransferase compare
PFLU_RS25875 -2.0 -2.9 transcription elongation factor GreA compare
PFLU_RS19170 -2.0 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18615 -2.0 -2.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS25735 -2.0 -4.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29290 -2.0 -3.5 hypothetical protein compare
PFLU_RS18395 -1.9 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS05250 -1.9 -3.6 elongation factor 4 compare
PFLU_RS18665 -1.9 -3.1 NADH-quinone oxidoreductase subunit L compare
PFLU_RS24900 -1.9 -4.1 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS01285 -1.8 -1.2 HAMP domain-containing protein compare
PFLU_RS07725 -1.8 -1.3 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS22685 -1.8 -7.6 2-methylcitrate synthase compare
PFLU_RS04070 -1.8 -4.3 peptide chain release factor 3 compare
PFLU_RS25715 -1.8 -8.3 RNA polymerase-binding protein DksA compare
PFLU_RS08615 -1.8 -2.4 YgdI/YgdR family lipoprotein compare
PFLU_RS05690 -1.8 -2.0 Grx4 family monothiol glutaredoxin compare
PFLU_RS23390 -1.8 -2.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS30215 -1.8 -5.9 KTSC domain-containing protein compare
PFLU_RS18640 -1.8 -3.6 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS02455 -1.8 -2.7 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS21495 -1.8 -1.2 TlpA family protein disulfide reductase compare
PFLU_RS27465 -1.8 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS27910 -1.7 -1.9 helix-turn-helix transcriptional regulator compare
PFLU_RS21925 -1.7 -3.5 YecA family protein compare
PFLU_RS23065 -1.7 -7.0 phosphate acyltransferase PlsX compare
PFLU_RS04165 -1.7 -6.1 cell division protein ZapE compare
PFLU_RS25025 -1.7 -2.8 hypothetical protein compare
PFLU_RS20515 -1.7 -4.5 amidophosphoribosyltransferase compare
PFLU_RS23045 -1.7 -6.1 beta-ketoacyl-ACP synthase II compare
PFLU_RS15410 -1.7 -1.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS11525 -1.6 -4.3 GntR family transcriptional regulator compare
PFLU_RS09305 -1.6 -9.6 hypothetical protein compare
PFLU_RS18670 -1.6 -2.1 NADH-quinone oxidoreductase subunit M compare
PFLU_RS22520 -1.5 -2.6 GntR family transcriptional regulator compare
PFLU_RS13795 -1.5 -1.4 hypothetical protein compare
PFLU_RS25740 -1.5 -5.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24160 -1.5 -4.2 HAMP domain-containing protein compare
PFLU_RS17950 -1.5 -1.6 hypothetical protein compare
PFLU_RS19165 -1.5 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS07645 -1.5 -3.8 hypothetical protein compare
PFLU_RS14775 -1.5 -1.4 enoyl-CoA hydratase compare
PFLU_RS02625 -1.5 -7.8 ribonuclease R compare
PFLU_RS22595 -1.5 -3.1 OmpA family protein compare
PFLU_RS25730 -1.5 -9.4 PAS domain S-box protein compare
PFLU_RS02580 -1.5 -6.9 FtsH protease activity modulator HflK compare
PFLU_RS02670 -1.5 -3.7 hypothetical protein compare
PFLU_RS29505 -1.5 -3.6 DNA-directed RNA polymerase subunit omega compare
PFLU_RS25205 -1.4 -4.2 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS23240 -1.4 -6.7 magnesium transporter compare
PFLU_RS05885 -1.4 -4.5 recombinase RecA compare
PFLU_RS04140 -1.4 -1.0 response regulator transcription factor compare
PFLU_RS18550 -1.4 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS18675 -1.4 -2.4 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS24905 -1.4 -8.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS23235 -1.4 -3.0 Arc family DNA-binding protein compare
PFLU_RS28650 -1.4 -4.3 RNA pyrophosphohydrolase compare
PFLU_RS08160 -1.4 -5.5 sugar transferase compare
PFLU_RS25210 -1.4 -4.7 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS25800 -1.4 -4.8 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS15610 -1.3 -3.5 helix-turn-helix transcriptional regulator compare
PFLU_RS22600 -1.3 -2.1 RNA polymerase sigma factor SigX compare
PFLU_RS23380 -1.3 -0.9 HAD-IB family hydrolase compare
PFLU_RS12915 -1.3 -1.9 methyltransferase domain-containing protein compare
PFLU_RS13370 -1.3 -0.9 DUF2790 domain-containing protein compare
PFLU_RS23100 -1.3 -3.7 ribonuclease E compare
PFLU_RS18505 -1.3 -6.4 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS19855 -1.3 -2.9 DUF4398 domain-containing protein compare
PFLU_RS25220 -1.3 -5.7 ubiquinol oxidase subunit II compare
PFLU_RS25215 -1.3 -7.5 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS00410 -1.3 -6.1 cytochrome c4 compare
PFLU_RS31445 -1.3 -2.6 colicin immunity protein compare
PFLU_RS21665 -1.3 -4.2 MinD/ParA family protein compare
PFLU_RS23920 -1.3 -1.0 septation protein A compare
PFLU_RS18620 -1.3 -3.8 NADH-quinone oxidoreductase subunit B compare
PFLU_RS08485 -1.3 -1.7 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS13540 -1.2 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS05020 -1.2 -1.2 DUF1120 domain-containing protein compare
PFLU_RS17060 -1.2 -1.6 monooxygenase compare
PFLU_RS26250 -1.2 -7.7 ferredoxin--NADP reductase compare
PFLU_RS01660 -1.2 -2.0 rhodanese-like domain-containing protein compare
PFLU_RS29090 -1.2 -5.2 exopolyphosphatase compare
PFLU_RS22690 -1.2 -6.5 methylisocitrate lyase compare
PFLU_RS03870 -1.2 -5.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS18645 -1.2 -2.0 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS00175 -1.2 -5.6 tryptophan synthase subunit alpha compare
PFLU_RS18595 -1.2 -3.0 cupin domain-containing protein compare
PFLU_RS26565 -1.2 -1.0 rRNA maturation RNase YbeY compare
PFLU_RS26595 -1.2 -0.8 lipoprotein compare
PFLU_RS08490 -1.2 -0.8 DEAD/DEAH box helicase compare
PFLU_RS15310 -1.2 -2.0 YgdI/YgdR family lipoprotein compare
PFLU_RS29400 -1.2 -0.9 DUF1127 domain-containing protein compare
PFLU_RS24690 -1.2 -6.7 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS06430 -1.2 -6.9 RNA polymerase sigma factor RpoS compare
PFLU_RS26950 -1.1 -5.4 outer membrane beta-barrel protein compare
PFLU_RS24860 -1.1 -1.7 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS01005 -1.1 -0.9 ABC transporter ATP-binding protein compare
PFLU_RS11930 -1.1 -1.6 biopolymer transporter ExbD compare
PFLU_RS22105 -1.1 -3.0 cysteine synthase CysM compare
PFLU_RS24085 -1.1 -3.6 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS08180 -1.1 -2.5 ketoacyl-ACP synthase III compare
PFLU_RS12580 -1.1 -4.7 MurR/RpiR family transcriptional regulator compare
PFLU_RS19610 -1.1 -3.5 hypothetical protein compare
PFLU_RS22335 -1.1 -4.6 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS29480 -1.1 -1.8 exodeoxyribonuclease III compare
PFLU_RS27475 -1.1 -3.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS00065 -1.1 -5.3 lysophospholipid acyltransferase compare
PFLU_RS29815 -1.1 -2.0 aspartate ammonia-lyase compare
PFLU_RS28470 -1.1 -2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS00465 -1.1 -5.2 spore maturation protein compare
PFLU_RS20285 -1.1 -4.0 MerR family transcriptional regulator compare
PFLU_RS12175 -1.1 -1.1 methyl-accepting chemotaxis protein compare
PFLU_RS07690 -1.1 -4.0 helix-turn-helix transcriptional regulator compare
PFLU_RS04660 -1.1 -3.2 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS13895 -1.1 -1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS25225 -1.0 -4.2 disulfide bond formation protein B compare
PFLU_RS12945 -1.0 -2.3 hypothetical protein compare
PFLU_RS07245 -1.0 -4.2 DegQ family serine endoprotease compare
PFLU_RS24695 -1.0 -1.0 PTS glucose transporter subunit IIB compare
PFLU_RS19900 -1.0 -0.9 general secretion pathway protein GspM compare
PFLU_RS29880 -1.0 -5.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS20870 -1.0 -2.1 hypothetical protein compare
PFLU_RS04220 -1.0 -4.2 FadR family transcriptional regulator compare
PFLU_RS14520 -1.0 -1.9 hypothetical protein compare
PFLU_RS02585 -1.0 -3.5 protease modulator HflC compare
PFLU_RS07255 -1.0 -2.0 sulfurtransferase TusA family protein compare
PFLU_RS07810 -1.0 -6.0 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS13120 -1.0 -0.6 hypothetical protein compare
PFLU_RS01885 -1.0 -2.0 Sec-independent protein translocase subunit TatB compare
PFLU_RS03575 -1.0 -1.6 hypothetical protein compare
PFLU_RS16310 -1.0 -1.9 hypothetical protein compare
PFLU_RS02860 -1.0 -1.1 urease subunit beta compare
PFLU_RS11600 -1.0 -2.8 metallophosphoesterase family protein compare
PFLU_RS22370 -1.0 -3.2 cadmium-translocating P-type ATPase compare
PFLU_RS25585 -1.0 -0.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS18940 -1.0 -4.0 acyl-CoA dehydrogenase compare
PFLU_RS08185 -1.0 -4.5 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS08280 -1.0 -2.0 hypothetical protein compare
PFLU_RS24095 -1.0 -2.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS19550 -1.0 -0.9 ABC transporter ATP-binding protein compare
PFLU_RS17525 -1.0 -1.7 NUDIX domain-containing protein compare
PFLU_RS29215 -1.0 -5.3 response regulator transcription factor compare
PFLU_RS16515 -1.0 -2.8 hypothetical protein compare
PFLU_RS20440 -1.0 -5.7 heavy metal sensor histidine kinase compare
PFLU_RS13765 -0.9 -1.7 hypothetical protein compare
PFLU_RS21570 -0.9 -1.5 exonuclease compare
PFLU_RS00155 -0.9 -3.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS26490 -0.9 -2.2 cation diffusion facilitator family transporter compare
PFLU_RS29900 -0.9 -5.2 DNA helicase II compare
PFLU_RS04205 -0.9 -3.4 cytochrome c1 compare
PFLU_RS29905 -0.9 -3.5 Tim44 domain-containing protein compare
PFLU_RS08505 -0.9 -3.4 protease HtpX compare
PFLU_RS04195 -0.9 -1.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS22725 -0.9 -1.7 transcriptional regulator compare
PFLU_RS02775 -0.9 -1.0 urease accessory protein UreF compare
PFLU_RS08360 -0.9 -2.3 hypothetical protein compare
PFLU_RS28320 -0.9 -1.2 glutathione synthase compare
PFLU_RS30955 -0.9 -3.6 type II toxin-antitoxin system MqsA family antitoxin compare
PFLU_RS17750 -0.9 -1.8 pirin family protein compare
PFLU_RS31530 -0.9 -0.8 transposase compare
PFLU_RS22325 -0.9 -3.5 cytochrome-c oxidase, cbb3-type subunit II compare
PFLU_RS22360 -0.9 -5.7 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS13640 -0.9 -1.8 isochorismatase family protein compare
PFLU_RS01955 -0.9 -3.4 DUF971 domain-containing protein compare
PFLU_RS01095 -0.9 -2.4 ribbon-helix-helix protein, CopG family compare
PFLU_RS21955 -0.9 -3.1 hypothetical protein compare
PFLU_RS02565 -0.9 -2.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS11850 -0.9 -1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS12800 -0.8 -1.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS23460 -0.8 -1.5 antibiotic biosynthesis monooxygenase compare


Specific Phenotypes

For 2 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs in Pseudomonas fluorescens SBW25-INTG

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms