Experiment set7IT054 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Spectinomycin dihydrochloride pentahydrate 0.00625 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c08590 +2.5 20.2 heme NO binding domain-containing protein compare
PGA1_c08600 +2.5 22.0 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c33190 +2.4 16.8 putative anti-sigma-B factor antagonist compare
PGA1_c34880 +2.4 21.8 putative response regulator compare
PGA1_c34890 +2.2 18.0 putative histidine-containing phosphotransfer protein compare
PGA1_c02460 +1.7 15.4 hypothetical protein compare
PGA1_c24220 +1.7 6.7 ornithine carbamoyltransferase ArgF compare
PGA1_c02440 +1.6 14.4 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c02450 +1.6 13.0 putative outer membrane efflux protein compare
PGA1_c02430 +1.6 11.9 type I secretion membrane fusion protein, HlyD family compare
PGA1_c14190 +1.4 9.1 putative transcriptional regulator, AraC family compare
PGA1_c31880 +1.3 12.7 signal transduction histidine kinase compare
PGA1_c06420 +1.3 5.6 acetyltransferase domain-containing protein compare
PGA1_c20140 +1.2 7.1 putative arginine-tRNA-protein transferase compare
PGA1_c17050 +1.2 4.2 N-acetyl-gamma-glutamyl-phosphate reductase ArgC compare
PGA1_c02050 +1.1 4.4 acetylglutamate kinase ArgB compare
PGA1_c24230 +1.0 7.1 acetylornithine aminotransferase ArgD compare
PGA1_c06670 +0.9 4.2 carbamoyl-phosphate synthase small chain compare
PGA1_262p01260 +0.9 2.9 copper-containing nitrite reductase NirK compare
PGA1_c18560 +0.8 2.0 hypothetical protein compare
PGA1_65p00450 +0.8 4.1 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c12550 +0.8 2.7 hypothetical protein compare
PGA1_c10730 +0.8 3.0 ribose-5-phosphate isomerase B compare
PGA1_c19100 +0.8 2.2 hypothetical protein compare
PGA1_c31270 +0.7 7.0 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c10130 +0.7 4.4 glutathione import ATP-binding protein GsiA compare
PGA1_c31260 +0.7 6.6 Protein of unknown function (DUF3131). compare
PGA1_c24560 +0.7 4.4 carbamoyl-phosphate synthase large chain compare
PGA1_c32530 +0.7 4.8 CobW-like nucleotide-binding protein compare
PGA1_c11400 +0.7 3.0 ferric uptake regulation protein Fur compare
PGA1_c26890 +0.7 1.7 putative endoribonuclease compare
PGA1_c15660 +0.6 3.6 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c35170 +0.6 1.6 DNA polymerase III subunit epsilon compare
PGA1_262p01630 +0.6 1.3 hypothetical protein compare
PGA1_c13430 +0.6 2.6 C4-dicarboxylate transport sensor protein DctB compare
PGA1_c26850 +0.6 2.6 Predicted metal-binding protein compare
PGA1_c31930 +0.6 5.1 putative transporter, MFS family compare
PGA1_c09290 +0.6 2.3 WGR domain. compare
PGA1_c07870 +0.6 4.4 alpha-glucoside transport system permease protein AglF compare
PGA1_c21000 +0.6 2.5 Predicted integral membrane protein (DUF2282). compare
PGA1_c23670 +0.5 1.6 Putative peptidoglycan binding domain. compare
PGA1_c15590 +0.5 4.9 putative transcriptional activator protein compare
PGA1_c07920 +0.5 2.7 signal transduction histidine kinase compare
PGA1_c07900 +0.5 4.1 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c14270 +0.5 1.9 hypothetical protein compare
PGA1_c24760 +0.5 3.0 hypothetical protein compare
PGA1_262p00710 +0.5 1.5 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c27240 +0.5 0.9 hypothetical protein compare
PGA1_c29000 +0.5 2.0 inner membrane lipoprotein compare
PGA1_c07860 +0.5 3.4 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_262p00570 +0.5 2.1 hypothetical protein compare
PGA1_c18050 +0.5 2.6 Uncharacterized conserved protein compare
PGA1_65p00270 +0.5 2.5 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_262p01280 +0.5 1.7 transcriptional regulator, TetR family compare
PGA1_65p00380 +0.5 1.4 hypothetical protein compare
PGA1_c31510 +0.4 2.7 carbonic anhydrase CynT compare
PGA1_262p01410 +0.4 1.2 malate/L-lactate dehydrogenase-like protein compare
PGA1_c13080 +0.4 2.0 transcriptional regulator, GntR family compare
PGA1_c09140 +0.4 1.8 dethiobiotin synthetase BioD compare
PGA1_c05260 +0.4 3.4 exopolysaccharide production protein ExoY-like protein compare
PGA1_c12310 +0.4 3.1 glucans biosynthesis protein G compare
PGA1_c15280 +0.4 1.8 Uncharacterized conserved protein compare
PGA1_c05750 +0.4 2.0 hypothetical protein compare
PGA1_c21900 +0.4 1.6 Uncharacterized conserved small protein compare
PGA1_c19130 +0.4 2.3 hypothetical protein compare
PGA1_c13510 +0.4 1.5 hypothetical protein compare
PGA1_c17760 +0.4 2.3 gene transfer agent (GTA) protein compare
PGA1_c32150 +0.4 2.4 pyrazinamidase/nicotinamidase compare
PGA1_c10120 +0.4 3.2 putative glutathione-binding protein GsiB compare
PGA1_c17020 +0.4 1.6 Protein of unknown function (DUF3154). compare
PGA1_262p00060 +0.4 1.4 putative glycosyl transferase compare
PGA1_c22900 +0.4 1.9 putative type IV secretion system protein VirB9 compare
PGA1_262p01020 +0.4 2.1 dipeptide transport system permease protein DppC compare
PGA1_c02020 +0.4 2.0 Predicted metal-binding protein compare
PGA1_c10110 +0.4 2.3 glutathione transport system permease protein GsiC compare
PGA1_c09170 +0.4 2.3 putative biotin synthesis protein BioC compare
PGA1_c02700 +0.4 2.6 putative HTH-type transcriptional regulator compare
PGA1_c07710 +0.4 0.9 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c31380 +0.4 2.0 hypothetical protein compare
PGA1_c09910 +0.4 1.5 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c22820 +0.4 1.6 lytic transglycosylase-like protein compare
PGA1_65p00170 +0.4 1.6 putative capsular polysaccharide biosynthesis protein compare
PGA1_262p00340 +0.4 1.7 oligopeptide ABC transporter, ATP binding protein compare
PGA1_262p00910 +0.4 1.5 putative cation transort protein compare
PGA1_c32110 +0.4 1.7 hypothetical protein compare
PGA1_c07880 +0.4 2.7 alpha-glucoside transport system permease protein AglG compare
PGA1_c28320 +0.4 2.0 ABC transporter, ATP-binding protein compare
PGA1_c15410 +0.4 1.2 hypothetical protein compare
PGA1_c17830 +0.4 1.8 putative gene transfer agent prohead protease compare
PGA1_c11930 +0.4 1.9 Cytidine deaminase (EC 3.5.4.5) (from data) compare
PGA1_c34120 +0.4 0.6 HTH-type transcriptional regulator PetP compare
PGA1_c22810 +0.4 1.1 hypothetical protein compare
PGA1_c34950 +0.4 2.3 putative branched-chain-amino-acid aminotransferase, subunit B compare
PGA1_c05390 +0.4 1.7 glycosyl transferase compare
PGA1_c11220 +0.4 2.8 Predicted transcriptional regulators compare
PGA1_c05370 +0.4 3.4 polyketide synthase compare
PGA1_c09260 +0.4 1.3 Uncharacterized conserved protein compare
PGA1_c17980 +0.4 1.7 protein CsaA compare
PGA1_c10770 +0.4 2.3 5'-nucleotidase SurE compare
PGA1_c17990 +0.4 1.8 D-malate dehydrogenase compare
PGA1_c02470 +0.4 3.3 putative serine-protein kinase, PrkA type compare
PGA1_c17810 +0.4 2.1 putative gene transfer agent protein compare
PGA1_262p01680 +0.4 1.5 hypothetical protein compare
PGA1_c11710 +0.3 1.6 transcriptional regulator, LysR family compare
PGA1_c17030 +0.3 0.6 peptidoglycan binding domain-containing protein compare
PGA1_c13640 +0.3 1.7 Phosphopantetheine attachment site. compare
PGA1_c17130 +0.3 2.0 hypothetical protein compare
PGA1_c18490 +0.3 3.1 Predicted ATPase compare
PGA1_c04010 +0.3 0.6 putative universal stress protein compare
PGA1_c07850 +0.3 1.3 transcriptional regulator, lacI family compare
PGA1_c23760 +0.3 1.7 putative glutathione S-transferase compare
PGA1_c01580 +0.3 3.3 hypothetical protein compare
PGA1_c34930 +0.3 1.9 Uncharacterized conserved protein compare
PGA1_c17800 +0.3 1.1 putative gene transfer agent head-tail adaptor compare
PGA1_c14130 +0.3 1.7 transglycolase-like protein compare
PGA1_c21950 +0.3 1.5 putative N-acetylmuramoyl-L-alanine amidase AmiD compare
PGA1_262p01290 +0.3 1.6 transcriptional regulator, AraC family compare
PGA1_c14140 +0.3 1.2 hypothetical protein compare
PGA1_65p00260 +0.3 1.7 putative metallopeptidase compare
PGA1_c07500 +0.3 2.3 hypothetical protein compare
PGA1_c05300 +0.3 2.2 putative glycosyl transferase compare
PGA1_c34770 +0.3 2.2 Uncharacterized protein conserved in bacteria compare
PGA1_c06000 +0.3 1.1 chorismate mutase-like protein compare
PGA1_262p01165 +0.3 1.1 hypothetical protein compare
PGA1_c10690 +0.3 1.0 hypothetical protein compare
PGA1_c33890 +0.3 1.5 thioesterase-like protein compare
PGA1_c05400 +0.3 2.2 putative glycosyl transferase, family 2 compare
PGA1_65p00030 +0.3 1.5 putative type I secretion system ATPase compare
PGA1_c07890 +0.3 2.4 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_c01270 +0.3 1.1 Hypoxia induced protein conserved region. compare
PGA1_c17440 +0.3 1.2 putative peroxiredoxin Bcp compare
PGA1_c22510 +0.3 1.3 hypothetical protein compare
PGA1_c17700 +0.3 0.9 hypothetical protein compare
PGA1_262p00810 +0.3 1.5 putative flavoprotein, HFCD family compare
PGA1_c20590 +0.3 0.8 hypothetical protein compare
PGA1_c14490 +0.3 1.0 Uncharacterized conserved small protein compare
PGA1_c04070 +0.3 2.0 phenylacetic acid degradation protein PaaB compare
PGA1_262p01700 +0.3 1.5 putative ABC transporter, solute-binding protein compare
PGA1_65p00160 +0.3 1.3 Bacterial putative lipoprotein (DUF940). compare
PGA1_c04540 +0.3 1.9 putative d-galactonate dehydratase compare
PGA1_c09960 +0.3 1.1 putative transcriptional regulator, TetR family compare
PGA1_c13450 +0.3 0.8 ribonuclease E compare
PGA1_c17910 +0.3 0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase-like protein compare
PGA1_c16370 +0.3 1.4 arginase ArcA compare
PGA1_c12300 +0.3 2.2 glucans biosynthesis glucosyltransferase H compare
PGA1_c23620 +0.3 1.5 Predicted membrane protein compare
PGA1_c05410 +0.3 2.0 hypothetical protein compare
PGA1_c05290 +0.3 2.4 polysaccharide biosynthesis protein ExoT-like protein compare
PGA1_c15710 +0.3 1.3 acyl-CoA dehydrogenase compare
PGA1_c17490 +0.3 1.9 hemolysin-type calcium-binding repeat-containing protein compare
PGA1_262p00410 +0.3 1.5 ASPIC and UnbV. compare
PGA1_c22270 +0.3 1.2 Protein of unknown function (DUF1353). compare
PGA1_c32590 +0.3 0.8 hypothetical protein compare
PGA1_c03330 +0.3 0.9 tetratricopeptide repeat-containing protein compare
PGA1_c05350 +0.3 2.5 dimodular nonribosomal peptide synthetase compare
PGA1_c34900 +0.3 2.2 threonine dehydratase biosynthetic compare
PGA1_c05530 +0.3 1.4 putative allantoin catabolism protein compare
PGA1_c18580 +0.3 1.3 hypothetical protein compare
PGA1_c02880 +0.3 1.9 uvrABC system protein C compare
PGA1_c25990 +0.3 0.9 hypothetical protein compare
PGA1_c36280 +0.3 2.2 TIGR00730 family protein compare
PGA1_c12110 +0.3 1.8 thioesterase domain-containing protein compare
PGA1_c27890 +0.3 1.4 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) compare
PGA1_c34600 +0.3 2.2 arginine biosynthesis bifunctional protein ArgJ compare
PGA1_c15040 +0.3 1.3 Uncharacterized conserved protein compare
PGA1_c04420 +0.3 1.9 putative glutathione transport system permease protein GsiD compare
PGA1_c12020 +0.3 2.3 fatty acid oxidation complex FadJ subunit alpha compare
PGA1_c20800 +0.3 1.8 hypothetical protein compare
PGA1_c05380 +0.3 2.0 hypothetical protein compare
PGA1_c29900 +0.3 1.0 protein slyX-like protein compare
PGA1_c22340 +0.3 1.4 hypothetical protein compare
PGA1_c12120 +0.3 1.6 thioesterase domain-containing protein compare
PGA1_c18480 +0.3 2.4 hypothetical protein compare
PGA1_c26070 +0.3 1.5 antibiotic biosynthesis monooxygenase-like protein compare
PGA1_c05310 +0.3 1.9 putative glycosyl transferase compare
PGA1_c08060 +0.3 1.5 hypothetical protein compare
PGA1_262p01490 +0.3 0.7 putative sarcosine oxidase, gamma subunit compare
PGA1_c24450 +0.3 1.4 Uncharacterized conserved protein compare
PGA1_c02550 +0.3 1.8 protocatechuate 3,4-dioxygenase alpha chain compare
PGA1_c12750 +0.3 0.8 Predicted transporter component compare
PGA1_c26150 +0.3 0.5 putative ETC complex I subunit compare
PGA1_c27290 +0.3 0.8 response regulator compare
PGA1_262p00090 +0.3 1.1 putative exopolysaccharide biosynthesis transport protein compare
PGA1_c17260 +0.3 0.7 hypothetical protein compare
PGA1_c28760 +0.3 1.7 Uncharacterized conserved protein compare
PGA1_262p00740 +0.3 1.4 putative peptidase, family M20/M25/M40 compare
PGA1_c08680 +0.3 1.6 pirin-like protein compare
PGA1_c20480 +0.3 0.5 tRNA-Val compare
PGA1_c34590 +0.3 1.5 putative peptidylprolyl isomerase compare
PGA1_262p01390 +0.3 0.5 hypothetical protein compare
PGA1_c11490 +0.3 1.9 pyrimidine-specific ribonucleoside hydrolase RihA compare
PGA1_c07430 +0.3 1.4 putative transcriptional regulator, IclR family compare
PGA1_c30900 +0.3 0.8 hypothetical protein compare
PGA1_c13030 +0.3 1.6 putative tetracycline resistance protein, class C compare
PGA1_c06730 +0.3 2.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
PGA1_c09470 +0.3 1.7 putative ATP-binding protein compare
PGA1_c29160 +0.3 1.7 HTH-type transcriptional regulator, LysR family compare
PGA1_262p00920 +0.3 1.1 Membrane proteins related to metalloendopeptidases compare
PGA1_c35040 +0.3 1.6 nucleoside-triphosphatase RdgB compare
PGA1_c08320 +0.3 1.8 transcriptional regulator, LysR family compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Phaeobacter inhibens DSM 17395

For stress Spectinomycin dihydrochloride pentahydrate across organisms