Experiment set7IT054 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Malonic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01632 +1.9 17.3 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01633 +1.8 11.2 hypothetical protein compare
H281DRAFT_06056 +1.7 12.9 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00469 +1.7 7.5 phasin family protein compare
H281DRAFT_04390 +1.5 10.2 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +1.5 10.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05768 +1.5 6.1 flagellar L-ring protein precursor FlgH compare
H281DRAFT_00240 +1.4 8.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06190 +1.4 1.8 DNA-binding protein H-NS compare
H281DRAFT_00853 +1.3 2.6 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_00506 +1.3 1.1 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_02346 +1.3 3.8 general secretion pathway protein M compare
H281DRAFT_03674 +1.3 2.7 hypothetical protein compare
H281DRAFT_00706 +1.2 1.8 outer membrane protein compare
H281DRAFT_04179 +1.2 9.6 two-component system, OmpR family, sensor kinase compare
H281DRAFT_00236 +1.2 5.5 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_00819 +1.2 1.9 competence protein ComEA compare
H281DRAFT_04415 +1.2 1.9 phosphate uptake regulator, PhoU compare
H281DRAFT_01927 +1.2 10.1 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_01827 +1.2 2.0 hypothetical protein compare
H281DRAFT_02007 +1.1 9.7 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_03890 +1.1 3.3 Broad specificity phosphatase PhoE compare
H281DRAFT_02008 +1.1 7.2 phosphocarrier protein compare
H281DRAFT_00998 +1.1 3.1 outer membrane protein, multidrug efflux system compare
H281DRAFT_01111 +1.1 2.0 transcriptional regulator, DeoR family compare
H281DRAFT_00504 +1.1 4.0 hypothetical protein compare
H281DRAFT_01069 +1.0 2.0 Cytosine/adenosine deaminase compare
H281DRAFT_04858 +1.0 1.5 hypothetical protein compare
H281DRAFT_02614 +1.0 3.2 L-glutamine ABC transporter membrane protein compare
H281DRAFT_06163 +1.0 1.5 hypothetical protein compare
H281DRAFT_03113 +1.0 4.0 2-dehydropantoate 2-reductase compare
H281DRAFT_06194 +1.0 2.3 Proteolipid membrane potential modulator compare
H281DRAFT_02067 +1.0 2.4 hypothetical protein compare
H281DRAFT_06385 +1.0 2.2 hypothetical protein compare
H281DRAFT_04369 +0.9 3.2 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_06269 +0.9 2.7 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_04683 +0.9 5.8 glycolate oxidase compare
H281DRAFT_02441 +0.9 1.5 putative ABC transport system ATP-binding protein compare
H281DRAFT_05653 +0.9 2.4 hypothetical protein compare
H281DRAFT_06462 +0.9 2.0 hypothetical protein compare
H281DRAFT_05950 +0.9 4.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01914 +0.9 3.6 Predicted PurR-regulated permease PerM compare
H281DRAFT_06322 +0.9 2.8 LPS-assembly lipoprotein compare
H281DRAFT_05763 +0.9 5.1 flagellar basal-body rod protein FlgC compare
H281DRAFT_03644 +0.8 1.6 betaine-aldehyde dehydrogenase compare
H281DRAFT_03220 +0.8 1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01742 +0.8 1.9 putative oxidoreductase compare
H281DRAFT_05774 +0.8 2.7 flagellar biosynthetic protein FliR compare
H281DRAFT_02231 +0.8 1.7 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_05769 +0.8 4.8 flagellar P-ring protein precursor FlgI compare
H281DRAFT_05021 +0.8 1.2 Response regulator compare
H281DRAFT_02803 +0.8 1.7 thioredoxin 1 compare
H281DRAFT_05908 +0.8 1.9 hypothetical protein compare
H281DRAFT_05755 +0.8 2.5 flagellar biosynthesis protein FlhG compare
H281DRAFT_05784 +0.8 2.7 flagellar assembly protein FliH compare
H281DRAFT_00852 +0.8 5.5 acetyl-CoA acetyltransferase compare
H281DRAFT_02651 +0.8 1.3 transcriptional regulator, MerR family compare
H281DRAFT_01239 +0.8 0.8 hypothetical protein compare
H281DRAFT_04932 +0.8 2.5 MbtH protein compare
H281DRAFT_05770 +0.8 4.7 flagellar protein FlgJ compare
H281DRAFT_06297 +0.8 1.1 L-arabinose-binding protein compare
H281DRAFT_05767 +0.8 3.3 flagellar basal-body rod protein FlgG compare
H281DRAFT_03837 +0.8 3.2 hypothetical protein compare
H281DRAFT_00728 +0.8 3.1 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_02350 +0.8 4.6 general secretion pathway protein I compare
H281DRAFT_03419 +0.8 2.3 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_03477 +0.8 3.7 hypothetical protein compare
H281DRAFT_05561 +0.8 4.1 transcriptional regulator, TetR family compare
H281DRAFT_03240 +0.8 2.8 pyruvate dehydrogenase (quinone) compare
H281DRAFT_05899 +0.8 2.3 hypothetical protein compare
H281DRAFT_03981 +0.8 1.6 Uncharacterized membrane protein compare
H281DRAFT_04904 +0.8 1.6 outer membrane transport energization protein ExbD compare
H281DRAFT_00740 +0.8 2.5 Predicted dehydrogenase compare
H281DRAFT_01190 +0.8 1.8 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_03606 +0.8 3.7 CheC, inhibitor of MCP methylation compare
H281DRAFT_03827 +0.8 3.2 transcriptional regulator, LacI family compare
H281DRAFT_03245 +0.8 2.5 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_00298 +0.7 1.6 hypothetical protein compare
H281DRAFT_05243 +0.7 1.6 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_05963 +0.7 3.7 transcriptional regulator, IclR family compare
H281DRAFT_00254 +0.7 5.5 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_02566 +0.7 1.8 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00255 +0.7 2.0 hypothetical protein compare
H281DRAFT_03184 +0.7 1.0 cation diffusion facilitator family transporter compare
H281DRAFT_06320 +0.7 2.9 biopolymer transport protein ExbD compare
H281DRAFT_04681 +0.7 5.5 glycolate oxidase iron-sulfur subunit compare
H281DRAFT_05221 +0.7 2.6 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_01512 +0.7 2.0 transcriptional regulator, IclR family compare
H281DRAFT_05753 +0.7 4.0 flagellar biosynthesis protein FlhA compare
H281DRAFT_00895 +0.7 3.5 trigger factor compare
H281DRAFT_06046 +0.7 1.1 serine/threonine protein phosphatase 1 compare
H281DRAFT_02287 +0.7 1.9 PKHD-type hydroxylase compare
H281DRAFT_00991 +0.7 3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_05765 +0.7 5.5 flagellar hook protein FlgE compare
H281DRAFT_04682 +0.7 3.6 glycolate oxidase FAD binding subunit compare
H281DRAFT_03869 +0.7 3.4 hypothetical protein compare
H281DRAFT_05757 +0.7 1.6 Predicted nuclease of the RNAse H fold, HicB family compare
H281DRAFT_04618 +0.7 1.6 putative regulatory protein, FmdB family compare
H281DRAFT_03717 +0.7 1.5 Rhodanese-related sulfurtransferase compare
H281DRAFT_05005 +0.7 1.6 type III secretion protein HrpB1 compare
H281DRAFT_05778 +0.7 1.5 flagellar motor switch protein FliN/FliY compare
H281DRAFT_00050 +0.7 1.0 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_01775 +0.7 1.3 Putative intracellular protease/amidase compare
H281DRAFT_06285 +0.7 1.9 3-dehydroquinate dehydratase compare
H281DRAFT_00286 +0.7 2.2 transaldolase compare
H281DRAFT_01614 +0.7 1.4 hypothetical protein compare
H281DRAFT_06344 +0.7 2.4 transcriptional regulator, LysR family compare
H281DRAFT_00406 +0.7 2.0 Signal transduction histidine kinase compare
H281DRAFT_05000 +0.7 1.2 ATP synthase in type III secretion protein N compare
H281DRAFT_01521 +0.7 3.2 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_05885 +0.7 1.5 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_06576 +0.7 1.4 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_05445 +0.7 1.1 protein of unknown function (DUF4440) compare
H281DRAFT_05315 +0.7 1.3 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_06422 +0.7 1.5 hypothetical protein compare
H281DRAFT_01253 +0.7 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05752 +0.7 4.4 flagellar biosynthetic protein FlhB compare
H281DRAFT_03946 +0.7 1.4 transcriptional regulator, ArsR family compare
H281DRAFT_05537 +0.7 1.0 transcriptional regulator, IclR family compare
H281DRAFT_04115 +0.7 3.7 Regulator of sirC expression, contains transglutaminase-like and TPR domains compare
H281DRAFT_01931 +0.7 2.4 UPF0042 nucleotide-binding protein compare
H281DRAFT_04008 +0.7 2.2 RNAse PH compare
H281DRAFT_04368 +0.7 4.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_00733 +0.7 2.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03798 +0.6 1.4 NitT/TauT family transport system permease protein compare
H281DRAFT_01590 +0.6 1.5 hypothetical protein compare
H281DRAFT_05761 +0.6 3.7 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_01222 +0.6 1.2 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_03545 +0.6 2.7 hypothetical protein compare
H281DRAFT_06430 +0.6 1.6 hypothetical protein compare
H281DRAFT_02910 +0.6 1.4 conserved hypothetical protein compare
H281DRAFT_06289 +0.6 3.0 hypothetical protein compare
H281DRAFT_02756 +0.6 0.7 Cupin domain protein compare
H281DRAFT_00376 +0.6 1.6 transcriptional regulator, TetR family compare
H281DRAFT_02509 +0.6 2.6 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01544 +0.6 1.9 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05984 +0.6 1.9 conserved hypothetical protein compare
H281DRAFT_03297 +0.6 1.0 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_02058 +0.6 0.9 cholesterol transport system auxiliary component compare
H281DRAFT_01108 +0.6 0.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03986 +0.6 1.8 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_03498 +0.6 2.0 hypothetical protein compare
H281DRAFT_04764 +0.6 2.0 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_02942 +0.6 1.2 glycerate dehydrogenase compare
H281DRAFT_02934 +0.6 2.0 hypothetical protein compare
H281DRAFT_02508 +0.6 1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02772 +0.6 3.8 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_00648 +0.6 1.9 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_01452 +0.6 2.7 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_00296 +0.6 3.7 poly(3-hydroxybutyrate) depolymerase compare
H281DRAFT_01159 +0.6 2.9 2-deoxy-D-gluconate 3-dehydrogenase compare
H281DRAFT_02556 +0.6 1.0 Outer membrane protein (porin) compare
H281DRAFT_05754 +0.6 2.4 flagellar biosynthesis protein FlhF compare
H281DRAFT_06083 +0.6 0.7 heat shock protein Hsp20 compare
H281DRAFT_01519 +0.6 1.6 fructuronate reductase compare
H281DRAFT_02873 +0.6 1.2 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_03062 +0.6 2.5 Uncharacterized conserved protein YndB, AHSA1/START domain compare
H281DRAFT_00465 +0.6 1.8 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_01319 +0.6 1.0 Uncharacterized protein, UPF0264 family compare
H281DRAFT_02291 +0.6 3.4 AraC-type DNA-binding protein compare
H281DRAFT_00848 +0.6 1.1 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_04734 +0.6 2.9 Uncharacterized membrane protein YqjE compare
H281DRAFT_03201 +0.6 1.5 transcriptional regulator, XRE family compare
H281DRAFT_02718 +0.6 1.1 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_02700 +0.6 1.2 feruloyl esterase compare
H281DRAFT_01050 +0.6 1.6 maleylacetate reductase compare
H281DRAFT_05071 +0.6 1.1 ammonium transporter compare
H281DRAFT_04970 +0.6 1.1 high-affinity iron transporter compare
H281DRAFT_03367 +0.6 0.9 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_03110 +0.6 1.8 concentrative nucleoside transporter, CNT family compare
H281DRAFT_00046 +0.6 1.2 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_01403 +0.6 1.3 hypothetical protein compare
H281DRAFT_00972 +0.6 1.8 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_03072 +0.6 2.0 Signal transduction histidine kinase compare
H281DRAFT_03388 +0.6 2.6 Predicted dithiol-disulfide isomerase, DsbA family compare
H281DRAFT_00717 +0.6 1.4 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_06468 +0.6 1.8 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_01029 +0.6 2.0 peptide/nickel transport system permease protein compare
H281DRAFT_03396 +0.6 1.4 AraC-type DNA-binding protein compare
H281DRAFT_04628 +0.6 0.9 FdhD protein compare
H281DRAFT_03234 +0.6 1.6 chemotaxis protein MotA compare
H281DRAFT_04515 +0.6 1.3 RNAse G compare
H281DRAFT_02677 +0.6 1.8 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01107 +0.6 0.9 hypothetical protein compare
H281DRAFT_01680 +0.6 2.5 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03117 +0.6 2.3 sarcosine oxidase subunit beta compare
H281DRAFT_02574 +0.6 1.8 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05352 +0.6 3.1 serine/threonine-protein kinase HipA compare
H281DRAFT_00366 +0.6 1.4 phospholipase C compare
H281DRAFT_03854 +0.6 1.7 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_05887 +0.6 0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03725 +0.6 1.0 hypothetical protein compare
H281DRAFT_00755 +0.6 2.7 transcriptional regulator, TetR family compare
H281DRAFT_01530 +0.6 1.8 Uncharacterized membrane-anchored protein compare
H281DRAFT_03917 +0.6 1.8 Uncharacterized integral membrane protein compare
H281DRAFT_02474 +0.6 0.8 electron transfer flavoprotein beta subunit compare
H281DRAFT_03242 +0.6 2.0 Predicted dithiol-disulfide isomerase, DsbA family compare
H281DRAFT_04431 +0.5 2.4 Membrane-bound metallopeptidase compare
H281DRAFT_06478 +0.5 2.2 succinylornithine aminotransferase apoenzyme compare
H281DRAFT_01131 +0.5 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Malonic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Malonic acid across organisms