Experiment set7IT053 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3794.1 -5.2 -2.9 Mobile element protein compare
Xcc-8004.2497.1 -4.5 -1.4 Mobile element protein compare
Xcc-8004.4039.1 -4.4 -3.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1365.1 -3.8 -1.7 FIG01211058: hypothetical protein compare
Xcc-8004.1200.1 -3.8 -1.6 hypothetical protein compare
Xcc-8004.3120.1 -3.4 -3.2 RNA-binding protein Hfq compare
Xcc-8004.3792.1 -3.4 -1.5 Mobile element protein compare
Xcc-8004.4732.1 -3.1 -2.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.2217.1 -2.9 -3.5 FIG01209779: hypothetical protein compare
Xcc-8004.3324.1 -2.9 -4.5 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.5021.1 -2.8 -2.2 FIG01211474: hypothetical protein compare
Xcc-8004.3054.1 -2.8 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1241.1 -2.7 -3.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3498.1 -2.6 -1.1 hypothetical protein compare
Xcc-8004.2110.1 -2.5 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1727.1 -2.4 -2.4 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1871.1 -2.3 -3.9 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1236.1 -2.3 -4.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.623.1 -2.3 -2.2 Phosphoserine phosphatase compare
Xcc-8004.4510.1 -2.2 -1.2 ATP binding component of ABC-transporter compare
Xcc-8004.4481.1 -2.2 -4.3 hypothetical protein compare
Xcc-8004.1676.1 -2.2 -6.1 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2921.1 -2.2 -3.3 ferrous iron transport protein compare
Xcc-8004.4168.1 -2.2 -3.3 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.2892.1 -2.2 -3.2 FIG01210619: hypothetical protein compare
Xcc-8004.2911.1 -2.2 -1.6 Transcription elongation factor GreA compare
Xcc-8004.2199.1 -2.1 -1.9 Hemerythrin-like protein PA1673 compare
Xcc-8004.1809.1 -2.1 -1.9 extracellular serine protease compare
Xcc-8004.1135.1 -2.0 -3.4 FIG01210448: hypothetical protein compare
Xcc-8004.4503.1 -2.0 -3.7 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3431.1 -2.0 -1.9 DNA repair protein RecN compare
Xcc-8004.3653.1 -2.0 -1.5 FIG01212122: hypothetical protein compare
Xcc-8004.3201.1 -1.9 -1.7 hypothetical protein compare
Xcc-8004.4620.1 -1.9 -5.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3855.1 -1.8 -5.2 FIG01209965: hypothetical protein compare
Xcc-8004.287.1 -1.8 -3.0 Haloalkane dehalogenase-like protein compare
Xcc-8004.4948.1 -1.8 -2.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.1858.1 -1.8 -1.3 FIG01211170: hypothetical protein compare
Xcc-8004.3321.1 -1.8 -2.0 FIG01209847: hypothetical protein compare
Xcc-8004.4306.1 -1.7 -1.4 hypothetical protein compare
Xcc-8004.5368.1 -1.7 -2.7 FIG01210868: hypothetical protein compare
Xcc-8004.2356.1 -1.7 -2.6 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.876.1 -1.7 -1.4 Mobile element protein compare
Xcc-8004.3795.1 -1.7 -2.5 Histidine kinase/response regulator hybrid protein compare
Xcc-8004.4596.1 -1.7 -5.0 hypothetical protein compare
Xcc-8004.280.1 -1.7 -4.5 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.2406.1 -1.6 -6.2 Manganese transport protein MntH compare
Xcc-8004.4457.1 -1.6 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.2627.1 -1.6 -1.7 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.837.1 -1.6 -1.4 FIG01210690: hypothetical protein compare
Xcc-8004.657.1 -1.6 -4.2 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1515.1 -1.6 -2.0 hypothetical protein compare
Xcc-8004.3723.1 -1.5 -1.5 hypothetical protein compare
Xcc-8004.3108.1 -1.5 -2.2 Regulatory protein RecX compare
Xcc-8004.3346.1 -1.5 -3.0 hypothetical protein compare
Xcc-8004.2337.1 -1.5 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3576.1 -1.5 -4.7 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.5125.1 -1.5 -3.2 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.2169.1 -1.5 -1.9 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1380.1 -1.4 -1.3 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3775.1 -1.4 -2.2 FIG001154: CcsA-related protein compare
Xcc-8004.2699.1 -1.4 -6.8 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.679.1 -1.4 -1.6 23Sr RNA gene compare
Xcc-8004.4073.1 -1.4 -4.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.4669.1 -1.4 -7.5 Transcriptional regulator NtrC family compare
Xcc-8004.3036.1 -1.4 -1.9 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.5369.1 -1.4 -3.8 Lipoprotein compare
Xcc-8004.5201.1 -1.4 -1.6 FIG01211164: hypothetical protein compare
Xcc-8004.3980.1 -1.4 -3.5 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.1763.1 -1.4 -1.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.27.1 -1.4 -0.8 hypothetical protein compare
Xcc-8004.2652.1 -1.4 -1.5 response regulator compare
Xcc-8004.4441.1 -1.3 -1.8 Tyrosine recombinase XerD compare
Xcc-8004.3976.1 -1.3 -3.0 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2922.1 -1.3 -1.4 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2012.1 -1.3 -2.9 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.322.1 -1.3 -1.8 Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family compare
Xcc-8004.1437.1 -1.3 -3.4 Kup system potassium uptake protein compare
Xcc-8004.2213.1 -1.3 -1.6 FIG01210598: hypothetical protein compare
Xcc-8004.2372.1 -1.3 -3.9 Pheromone shutdown protein compare
Xcc-8004.271.1 -1.3 -2.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1512.1 -1.3 -1.4 RNA polymerase sigma-70 factor compare
Xcc-8004.3322.1 -1.3 -1.0 FIG01211446: hypothetical protein compare
Xcc-8004.3759.1 -1.3 -1.3 hypothetical protein compare
Xcc-8004.1491.1 -1.3 -6.2 Glycosyltransferase compare
Xcc-8004.1416.1 -1.2 -2.4 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.399.1 -1.2 -1.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.4439.1 -1.2 -5.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.726.1 -1.2 -0.8 Putative preQ0 transporter compare
Xcc-8004.4951.1 -1.2 -1.5 FIG01210986: hypothetical protein compare
Xcc-8004.3049.1 -1.2 -4.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4824.1 -1.2 -4.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4112.1 -1.2 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3982.1 -1.2 -3.2 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.1436.1 -1.2 -1.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.564.1 -1.2 -1.6 Mobile element protein compare
Xcc-8004.401.1 -1.2 -1.1 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.5133.1 -1.2 -1.1 FIG01212313: hypothetical protein compare
Xcc-8004.410.1 -1.2 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3722.1 -1.2 -1.0 HrpB7 protein compare
Xcc-8004.659.1 -1.2 -1.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1329.1 -1.2 -2.2 Virulence regulator compare
Xcc-8004.4255.1 -1.2 -2.2 Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8) compare
Xcc-8004.3013.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.4499.1 -1.2 -1.4 Mobile element protein compare
Xcc-8004.1162.1 -1.2 -2.3 FIG01210644: hypothetical protein compare
Xcc-8004.4956.1 -1.2 -2.5 Cytochrome B561 compare
Xcc-8004.601.1 -1.1 -2.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.5297.1 -1.1 -2.4 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.99.1 -1.1 -0.9 FIG01211055: hypothetical protein compare
Xcc-8004.5135.1 -1.1 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.2385.1 -1.1 -5.6 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.3426.1 -1.1 -3.1 Chaperone protein DnaJ compare
Xcc-8004.2477.1 -1.1 -4.3 Excinuclease ABC subunit C compare
Xcc-8004.353.1 -1.1 -1.3 FIG01210121: hypothetical protein compare
Xcc-8004.1112.1 -1.1 -2.0 Short chain dehydrogenase compare
Xcc-8004.5302.1 -1.1 -1.9 FIG039767: hypothetical protein compare
Xcc-8004.5202.1 -1.1 -2.8 Twin-arginine translocation protein TatC compare
Xcc-8004.2882.1 -1.1 -1.7 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.279.1 -1.1 -1.8 FIG01210420: hypothetical protein compare
Xcc-8004.2358.1 -1.1 -3.7 Segregation and condensation protein A compare
Xcc-8004.1511.1 -1.1 -1.6 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2711.1 -1.1 -1.3 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.4986.1 -1.1 -1.5 FIG01209754: hypothetical protein compare
Xcc-8004.4105.1 -1.1 -1.2 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.2920.1 -1.1 -3.5 Ferrous iron transport protein B compare
Xcc-8004.4431.1 -1.1 -2.5 General secretion pathway protein F compare
Xcc-8004.1808.1 -1.1 -2.4 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.377.1 -1.1 -3.7 Adenosine deaminase (EC 3.5.4.4) compare
Xcc-8004.1027.1 -1.1 -0.9 Two-component system sensor protein compare
Xcc-8004.946.1 -1.0 -1.6 General secretion pathway protein H compare
Xcc-8004.4752.1 -1.0 -1.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1151.1 -1.0 -2.6 Beta-lactamase compare
Xcc-8004.574.1 -1.0 -3.1 Di-/tripeptide transporter compare
Xcc-8004.2700.1 -1.0 -4.2 hypothetical protein compare
Xcc-8004.4507.1 -1.0 -2.3 Glycosyltransferase compare
Xcc-8004.1362.1 -1.0 -1.9 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.3717.1 -1.0 -2.3 Hpa2 protein compare
Xcc-8004.4810.1 -1.0 -5.0 hypothetical protein compare
Xcc-8004.649.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.2944.1 -1.0 -3.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.290.1 -1.0 -3.1 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.4227.1 -1.0 -1.6 ThiJ/PfpI family protein compare
Xcc-8004.4210.1 -1.0 -3.1 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.4398.1 -1.0 -3.4 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.2713.1 -1.0 -0.8 Nitrate/nitrite transporter compare
Xcc-8004.1113.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.4514.1 -1.0 -5.7 Glycosyltransferase compare
Xcc-8004.1615.1 -0.9 -0.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4982.1 -0.9 -1.2 Protein yjbJ compare
Xcc-8004.1943.1 -0.9 -1.8 FIG01211831: hypothetical protein compare
Xcc-8004.127.1 -0.9 -0.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1897.1 -0.9 -1.6 Acyl-CoA thioester hydrolase compare
Xcc-8004.3211.1 -0.9 -2.0 protein of unknown function DUF88 compare
Xcc-8004.1825.1 -0.9 -2.5 FIG01210006: hypothetical protein compare
Xcc-8004.4506.1 -0.9 -4.2 membrane protein WxcD compare
Xcc-8004.1720.1 -0.9 -1.1 UPF0301 protein YqgE compare
Xcc-8004.133.1 -0.9 -1.6 FIG01209858: hypothetical protein compare
Xcc-8004.3310.1 -0.9 -2.0 Chromosome partition protein smc compare
Xcc-8004.4486.1 -0.9 -4.6 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.3923.1 -0.9 -1.2 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4731.1 -0.9 -1.5 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Xcc-8004.3848.1 -0.9 -1.6 FIG01212003: hypothetical protein compare
Xcc-8004.2259.1 -0.9 -2.5 PhbF compare
Xcc-8004.137.1 -0.9 -1.7 FIG01209674: hypothetical protein compare
Xcc-8004.3376.1 -0.9 -1.3 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.2011.1 -0.9 -0.7 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2570.1 -0.9 -2.0 Integrase regulator R compare
Xcc-8004.2168.1 -0.9 -1.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.1978.1 -0.9 -2.2 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2153.1 -0.9 -2.1 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
Xcc-8004.471.1 -0.9 -1.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.609.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.270.1 -0.8 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3133.1 -0.8 -2.1 ortholog of Bordetella pertussis (BX470248) BP2475 compare
Xcc-8004.4739.1 -0.8 -2.0 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1372.1 -0.8 -1.4 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1120.1 -0.8 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3917.1 -0.8 -1.5 Mlr4646 protein compare
Xcc-8004.2663.1 -0.8 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.530.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.1890.1 -0.8 -2.8 hypothetical protein compare
Xcc-8004.4473.1 -0.8 -4.7 FIG01212400: hypothetical protein compare
Xcc-8004.4430.1 -0.8 -1.1 General secretion pathway protein G compare
Xcc-8004.3761.1 -0.8 -1.7 FIG01211233: hypothetical protein compare
Xcc-8004.183.1 -0.8 -1.3 FIG01211553: hypothetical protein compare
Xcc-8004.5114.1 -0.8 -2.8 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.234.1 -0.8 -3.7 cardiolipin synthase compare
Xcc-8004.56.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.4635.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.5303.1 -0.8 -1.8 FIG149030: hypothetical protein compare
Xcc-8004.3852.1 -0.8 -2.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.3752.1 -0.8 -0.8 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.2569.1 -0.8 -1.3 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.2943.1 -0.8 -2.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.24.1 -0.8 -2.6 FIG056164: rhomboid family serine protease compare
Xcc-8004.4976.1 -0.8 -4.5 hypothetical protein compare
Xcc-8004.4477.1 -0.8 -1.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.1551.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.2449.1 -0.8 -1.8 Glucokinase (EC 2.7.1.2) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in r2a control experiments