Experiment set7IT052 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2406.1 -4.0 -14.8 Manganese transport protein MntH compare
Xcc-8004.271.1 -3.5 -4.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3752.1 -3.4 -2.8 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.2012.1 -3.3 -7.7 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2217.1 -2.9 -3.4 FIG01209779: hypothetical protein compare
Xcc-8004.3728.1 -2.9 -2.5 hypothetical protein compare
Xcc-8004.3346.1 -2.8 -2.7 hypothetical protein compare
Xcc-8004.127.1 -2.5 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4738.1 -2.5 -11.1 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.4481.1 -2.4 -6.9 hypothetical protein compare
Xcc-8004.4737.1 -2.3 -6.4 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2337.1 -2.3 -6.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4039.1 -2.3 -3.4 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1162.1 -2.2 -2.8 FIG01210644: hypothetical protein compare
Xcc-8004.4844.1 -2.2 -1.4 FIG01210764: hypothetical protein compare
Xcc-8004.1436.1 -2.1 -2.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.1372.1 -2.0 -1.9 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4025.1 -2.0 -8.9 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3815.1 -2.0 -3.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4026.1 -1.9 -4.7 FIG01209666: hypothetical protein compare
Xcc-8004.5135.1 -1.9 -4.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.2921.1 -1.8 -3.2 ferrous iron transport protein compare
Xcc-8004.4620.1 -1.8 -6.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4473.1 -1.7 -11.1 FIG01212400: hypothetical protein compare
Xcc-8004.1491.1 -1.7 -10.0 Glycosyltransferase compare
Xcc-8004.2386.1 -1.7 -9.3 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.4507.1 -1.6 -5.5 Glycosyltransferase compare
Xcc-8004.4503.1 -1.6 -4.9 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.1615.1 -1.6 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1236.1 -1.6 -4.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1241.1 -1.6 -3.6 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4486.1 -1.6 -9.7 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.5133.1 -1.5 -2.2 FIG01212313: hypothetical protein compare
Xcc-8004.4514.1 -1.5 -9.7 Glycosyltransferase compare
Xcc-8004.2346.1 -1.5 -2.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.659.1 -1.5 -2.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.657.1 -1.5 -5.5 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.3054.1 -1.5 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1871.1 -1.5 -4.0 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2011.1 -1.5 -2.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.914.1 -1.4 -5.1 tail-specific protease compare
Xcc-8004.1437.1 -1.4 -4.0 Kup system potassium uptake protein compare
Xcc-8004.4485.1 -1.4 -5.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.5065.1 -1.4 -6.7 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.4439.1 -1.4 -7.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.1521.1 -1.4 -2.0 FIG01209895: hypothetical protein compare
Xcc-8004.4510.1 -1.4 -1.4 ATP binding component of ABC-transporter compare
Xcc-8004.950.1 -1.4 -1.0 General secretion pathway protein L compare
Xcc-8004.5125.1 -1.4 -3.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.585.1 -1.4 -2.4 Na(+) H(+) antiporter subunit F compare
Xcc-8004.2385.1 -1.3 -7.5 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.171.1 -1.3 -1.3 hypothetical protein compare
Xcc-8004.1768.1 -1.3 -2.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4373.1 -1.3 -3.0 LppC putative lipoprotein compare
Xcc-8004.4210.1 -1.3 -3.6 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.5021.1 -1.3 -2.0 FIG01211474: hypothetical protein compare
Xcc-8004.409.1 -1.3 -2.1 hypothetical protein compare
Xcc-8004.2343.1 -1.3 -1.7 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1365.1 -1.2 -1.3 FIG01211058: hypothetical protein compare
Xcc-8004.4824.1 -1.2 -5.4 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3120.1 -1.2 -2.7 RNA-binding protein Hfq compare
Xcc-8004.601.1 -1.2 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.270.1 -1.2 -4.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3049.1 -1.2 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1914.1 -1.2 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.1362.1 -1.2 -2.8 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.5114.1 -1.2 -4.6 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4480.1 -1.1 -5.6 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.1676.1 -1.1 -5.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.1027.1 -1.1 -1.4 Two-component system sensor protein compare
Xcc-8004.2086.1 -1.1 -1.5 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.589.1 -1.1 -1.5 hypothetical protein compare
Xcc-8004.2652.1 -1.1 -2.6 response regulator compare
Xcc-8004.3740.1 -1.1 -2.1 Type III secretion HpaB protein compare
Xcc-8004.1208.1 -1.1 -3.1 Glucarate dehydratase (EC 4.2.1.40) compare
Xcc-8004.1790.1 -1.1 -1.8 Zinc uptake regulation protein ZUR compare
Xcc-8004.3433.1 -1.1 -3.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2358.1 -1.1 -4.6 Segregation and condensation protein A compare
Xcc-8004.1832.1 -1.1 -1.3 FIG01210449: hypothetical protein compare
Xcc-8004.130.1 -1.1 -3.7 hypothetical protein compare
Xcc-8004.622.1 -1.1 -3.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.1266.1 -1.1 -1.9 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.4457.1 -1.1 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.3855.1 -1.1 -5.2 FIG01209965: hypothetical protein compare
Xcc-8004.2387.1 -1.1 -1.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.3726.1 -1.0 -1.0 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1434.1 -1.0 -1.4 FIG000859: hypothetical protein YebC compare
Xcc-8004.3313.1 -1.0 -2.3 LSU ribosomal protein L9p compare
Xcc-8004.2653.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.1247.1 -1.0 -2.8 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.2924.1 -1.0 -2.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.610.1 -1.0 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4947.1 -1.0 -2.0 Histone H1 compare
Xcc-8004.738.1 -1.0 -1.6 Malonate decarboxylase gamma subunit compare
Xcc-8004.273.1 -1.0 -4.6 FIG01209870: hypothetical protein compare
Xcc-8004.1359.1 -1.0 -2.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.93.1 -1.0 -2.4 FIG01211857: hypothetical protein compare
Xcc-8004.4073.1 -1.0 -5.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.3324.1 -1.0 -2.4 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2356.1 -0.9 -2.9 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.3322.1 -0.9 -1.2 FIG01211446: hypothetical protein compare
Xcc-8004.3385.1 -0.9 -2.5 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.5252.1 -0.9 -3.5 FIG01210658: hypothetical protein compare
Xcc-8004.4441.1 -0.9 -1.9 Tyrosine recombinase XerD compare
Xcc-8004.2699.1 -0.9 -6.2 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.3171.1 -0.9 -2.4 FIG01213081: hypothetical protein compare
Xcc-8004.3339.1 -0.9 -2.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4669.1 -0.9 -4.3 Transcriptional regulator NtrC family compare
Xcc-8004.3537.1 -0.9 -3.0 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1562.1 -0.9 -1.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.2561.1 -0.9 -4.5 FIG01213638: hypothetical protein compare
Xcc-8004.1964.1 -0.9 -5.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.3676.1 -0.9 -1.8 Translation elongation factor LepA compare
Xcc-8004.4001.1 -0.9 -2.1 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.5317.1 -0.9 -0.9 FIG01210332: hypothetical protein compare
Xcc-8004.3119.1 -0.9 -2.8 GTP-binding protein HflX compare
Xcc-8004.4112.1 -0.9 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4398.1 -0.9 -3.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.689.1 -0.9 -1.4 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.2169.1 -0.9 -1.8 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.576.1 -0.9 -1.5 FIG01210281: hypothetical protein compare
Xcc-8004.3310.1 -0.9 -2.5 Chromosome partition protein smc compare
Xcc-8004.4092.1 -0.9 -3.8 FIG01209901: hypothetical protein compare
Xcc-8004.1961.1 -0.9 -1.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.740.1 -0.8 -2.1 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.574.1 -0.8 -3.4 Di-/tripeptide transporter compare
Xcc-8004.4923.1 -0.8 -2.1 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Xcc-8004.2110.1 -0.8 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.117.1 -0.8 -2.3 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.2266.1 -0.8 -1.2 FIG01211351: hypothetical protein compare
Xcc-8004.4814.1 -0.8 -2.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.4381.1 -0.8 -2.1 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.4368.1 -0.8 -1.9 FIG01209977: hypothetical protein compare
Xcc-8004.1502.1 -0.8 -1.9 twitching motility protein PilG compare
Xcc-8004.805.1 -0.8 -1.4 Zinc transport protein ZntB compare
Xcc-8004.3376.1 -0.8 -2.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.2711.1 -0.8 -1.3 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.3754.1 -0.8 -1.1 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.1196.1 -0.8 -3.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.983.1 -0.8 -2.2 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.4221.1 -0.8 -2.3 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.1249.1 -0.8 -2.9 Transcriptional regulator compare
Xcc-8004.2911.1 -0.8 -1.5 Transcription elongation factor GreA compare
Xcc-8004.3368.1 -0.8 -2.4 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Xcc-8004.3703.1 -0.8 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.459.1 -0.8 -2.0 4-hydroxybenzoate transporter compare
Xcc-8004.4328.1 -0.8 -3.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1771.1 -0.8 -1.2 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.410.1 -0.8 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3653.1 -0.7 -1.2 FIG01212122: hypothetical protein compare
Xcc-8004.990.1 -0.7 -2.1 FIG01210796: hypothetical protein compare
Xcc-8004.4605.1 -0.7 -1.3 FIG001943: hypothetical protein YajQ compare
Xcc-8004.461.1 -0.7 -1.5 Transcriptional regulator, MarR family compare
Xcc-8004.5193.1 -0.7 -5.7 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.2319.1 -0.7 -2.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.4228.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.2944.1 -0.7 -2.9 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.3321.1 -0.7 -1.2 FIG01209847: hypothetical protein compare
Xcc-8004.730.1 -0.7 -2.4 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) compare
Xcc-8004.3041.1 -0.7 -1.8 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1361.1 -0.7 -1.1 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.559.1 -0.7 -1.4 FIG01213048: hypothetical protein compare
Xcc-8004.5087.1 -0.7 -1.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.1764.1 -0.7 -2.3 FIG01209971: hypothetical protein compare
Xcc-8004.5020.1 -0.7 -1.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.4250.1 -0.7 -2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.1010.1 -0.7 -3.6 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.770.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.1486.1 -0.7 -1.3 Coenzyme PQQ synthesis protein D compare
Xcc-8004.4697.1 -0.7 -1.9 FIG01210654: hypothetical protein compare
Xcc-8004.4810.1 -0.7 -3.8 hypothetical protein compare
Xcc-8004.1727.1 -0.7 -1.5 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.999.1 -0.7 -2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.29.1 -0.7 -3.1 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.2655.1 -0.7 -2.5 FIG024738: Hypothetical protein compare
Xcc-8004.1082.1 -0.7 -0.7 FIG01211203: hypothetical protein compare
Xcc-8004.924.1 -0.7 -1.5 FIG01200701: possible membrane protein compare
Xcc-8004.3775.1 -0.7 -1.4 FIG001154: CcsA-related protein compare
Xcc-8004.1841.1 -0.7 -1.8 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.396.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.1135.1 -0.7 -1.6 FIG01210448: hypothetical protein compare
Xcc-8004.722.1 -0.7 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1955.1 -0.7 -2.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1048.1 -0.7 -1.3 Transcriptional regulator lysR family compare
Xcc-8004.2415.1 -0.6 -4.1 FIG137360: hypothetical protein compare
Xcc-8004.781.1 -0.6 -2.6 inner membrane protein compare
Xcc-8004.2015.1 -0.6 -2.3 Short chain dehydrogenase compare
Xcc-8004.234.1 -0.6 -3.8 cardiolipin synthase compare
Xcc-8004.463.1 -0.6 -1.5 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-) compare
Xcc-8004.4313.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.1329.1 -0.6 -1.8 Virulence regulator compare
Xcc-8004.715.1 -0.6 -2.0 RNA polymerase sigma factor compare
Xcc-8004.5280.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.3817.1 -0.6 -2.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4499.1 -0.6 -1.3 Mobile element protein compare
Xcc-8004.4506.1 -0.6 -3.3 membrane protein WxcD compare
Xcc-8004.4383.1 -0.6 -2.3 Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.5192.1 -0.6 -3.9 hypothetical protein compare
Xcc-8004.4245.1 -0.6 -2.1 FIG01213330: hypothetical protein compare
Xcc-8004.3830.1 -0.6 -4.1 Excinuclease ABC subunit A compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms