Experiment set7IT051 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2011.1 -4.1 -3.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.1961.1 -4.0 -2.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.623.1 -3.5 -2.4 Phosphoserine phosphatase compare
Xcc-8004.127.1 -2.8 -1.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4510.1 -2.5 -2.1 ATP binding component of ABC-transporter compare
Xcc-8004.1615.1 -2.3 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2406.1 -2.2 -11.8 Manganese transport protein MntH compare
Xcc-8004.4439.1 -1.9 -10.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.5368.1 -1.8 -4.1 FIG01210868: hypothetical protein compare
Xcc-8004.456.1 -1.8 -2.0 carbonic anhydrase, family 3 compare
Xcc-8004.2012.1 -1.8 -5.4 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.659.1 -1.8 -3.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1568.1 -1.8 -1.7 Glycine cleavage system H protein compare
Xcc-8004.3310.1 -1.8 -4.2 Chromosome partition protein smc compare
Xcc-8004.1676.1 -1.8 -6.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.1241.1 -1.7 -3.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.657.1 -1.7 -6.7 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.3721.1 -1.6 -1.5 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.589.1 -1.5 -2.2 hypothetical protein compare
Xcc-8004.837.1 -1.4 -2.4 FIG01210690: hypothetical protein compare
Xcc-8004.1809.1 -1.4 -2.1 extracellular serine protease compare
Xcc-8004.1436.1 -1.3 -1.8 Holliday junction DNA helicase RuvA compare
Xcc-8004.3752.1 -1.3 -2.2 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4457.1 -1.2 -3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.3473.1 -1.2 -1.6 FIG01213437: hypothetical protein compare
Xcc-8004.4073.1 -1.2 -6.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2199.1 -1.2 -1.8 Hemerythrin-like protein PA1673 compare
Xcc-8004.1118.1 -1.2 -1.6 hypothetical protein compare
Xcc-8004.5280.1 -1.1 -2.6 hypothetical protein compare
Xcc-8004.601.1 -1.1 -4.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.5324.1 -1.1 -3.0 Mobile element protein compare
Xcc-8004.1132.1 -1.1 -2.0 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.1673.1 -1.1 -3.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Xcc-8004.4306.1 -1.1 -2.2 hypothetical protein compare
Xcc-8004.350.1 -1.1 -2.5 hypothetical protein compare
Xcc-8004.2563.1 -1.1 -1.4 FIG01210540: hypothetical protein compare
Xcc-8004.1236.1 -1.1 -3.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3703.1 -1.1 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3108.1 -1.1 -2.7 Regulatory protein RecX compare
Xcc-8004.2110.1 -1.1 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1372.1 -1.0 -1.4 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4853.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.4768.1 -1.0 -1.8 FIG01210642: hypothetical protein compare
Xcc-8004.2169.1 -1.0 -2.3 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.3723.1 -1.0 -2.4 hypothetical protein compare
Xcc-8004.718.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.4538.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.4200.1 -1.0 -1.4 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1359.1 -1.0 -4.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4620.1 -1.0 -4.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4669.1 -1.0 -7.3 Transcriptional regulator NtrC family compare
Xcc-8004.1919.1 -1.0 -3.6 FIG056164: rhomboid family serine protease compare
Xcc-8004.3322.1 -1.0 -0.9 FIG01211446: hypothetical protein compare
Xcc-8004.3728.1 -1.0 -0.7 hypothetical protein compare
Xcc-8004.1790.1 -1.0 -2.5 Zinc uptake regulation protein ZUR compare
Xcc-8004.4697.1 -1.0 -2.8 FIG01210654: hypothetical protein compare
Xcc-8004.3731.1 -1.0 -1.8 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.1906.1 -0.9 -1.8 lipoprotein compare
Xcc-8004.3320.1 -0.9 -1.3 FIG01209869: hypothetical protein compare
Xcc-8004.4381.1 -0.9 -2.4 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.1770.1 -0.9 -2.8 hypothetical protein compare
Xcc-8004.3049.1 -0.9 -4.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.713.1 -0.9 -0.9 FIG01210186: hypothetical protein compare
Xcc-8004.2168.1 -0.9 -2.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3834.1 -0.9 -2.9 Pathogenicity-related protein compare
Xcc-8004.5133.1 -0.9 -1.4 FIG01212313: hypothetical protein compare
Xcc-8004.1395.1 -0.9 -2.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Xcc-8004.2699.1 -0.9 -5.2 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.1133.1 -0.9 -1.4 Rubredoxin compare
Xcc-8004.2653.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.1045.1 -0.9 -3.0 hypothetical protein compare
Xcc-8004.3339.1 -0.9 -2.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3923.1 -0.9 -1.7 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4824.1 -0.8 -5.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4241.1 -0.8 -1.5 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.5169.1 -0.8 -3.3 L-fucose mutarotase, type 2 compare
Xcc-8004.1266.1 -0.8 -1.4 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.3017.1 -0.8 -3.4 hypothetical protein compare
Xcc-8004.2920.1 -0.8 -3.4 Ferrous iron transport protein B compare
Xcc-8004.3816.1 -0.8 -3.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1437.1 -0.8 -3.0 Kup system potassium uptake protein compare
Xcc-8004.778.1 -0.8 -1.3 FIG01214273: hypothetical protein compare
Xcc-8004.1576.1 -0.8 -2.4 FIG01211374: hypothetical protein compare
Xcc-8004.4039.1 -0.8 -1.5 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.117.1 -0.8 -1.1 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.585.1 -0.8 -1.0 Na(+) H(+) antiporter subunit F compare
Xcc-8004.574.1 -0.8 -3.3 Di-/tripeptide transporter compare
Xcc-8004.876.1 -0.8 -1.0 Mobile element protein compare
Xcc-8004.3054.1 -0.8 -1.2 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.236.1 -0.8 -1.1 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.4596.1 -0.8 -4.5 hypothetical protein compare
Xcc-8004.1914.1 -0.7 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2618.1 -0.7 -1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.5114.1 -0.7 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3119.1 -0.7 -2.3 GTP-binding protein HflX compare
Xcc-8004.689.1 -0.7 -1.1 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.2412.1 -0.7 -4.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.2319.1 -0.7 -2.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.998.1 -0.7 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4428.1 -0.7 -1.0 General secretion pathway protein I compare
Xcc-8004.5366.1 -0.7 -5.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.997.1 -0.7 -1.1 Possible GRAM domain compare
Xcc-8004.5326.1 -0.7 -1.1 Mobile element protein compare
Xcc-8004.1249.1 -0.7 -2.5 Transcriptional regulator compare
Xcc-8004.5226.1 -0.7 -0.5 FIG01212167: hypothetical protein compare
Xcc-8004.1137.1 -0.7 -1.2 FIG006231: RNA-binding protein compare
Xcc-8004.4281.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.1466.1 -0.7 -1.5 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.3753.1 -0.7 -1.6 putative secreted protein compare
Xcc-8004.5317.1 -0.7 -1.4 FIG01210332: hypothetical protein compare
Xcc-8004.1003.1 -0.7 -1.2 FIG027190: Putative transmembrane protein compare
Xcc-8004.3479.1 -0.7 -1.3 aklaviketone reductase compare
Xcc-8004.4446.1 -0.7 -3.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.2574.1 -0.7 -1.7 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.1810.1 -0.7 -2.8 FIG01210140: hypothetical protein compare
Xcc-8004.4185.1 -0.7 -1.5 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative compare
Xcc-8004.1138.1 -0.7 -2.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.3365.1 -0.7 -1.6 FIG01209831: hypothetical protein compare
Xcc-8004.5253.1 -0.7 -0.9 hypothetical protein compare
Xcc-8004.1515.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.409.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.5024.1 -0.7 -2.0 FIG01210241: hypothetical protein compare
Xcc-8004.53.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.2711.1 -0.7 -1.0 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.5021.1 -0.7 -1.1 FIG01211474: hypothetical protein compare
Xcc-8004.5365.1 -0.7 -3.4 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.1400.1 -0.7 -1.0 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1675.1 -0.7 -3.3 hypothetical protein compare
Xcc-8004.2533.1 -0.7 -2.3 Candidate type III effector Hop protein compare
Xcc-8004.2099.1 -0.6 -2.6 FIG01210647: hypothetical protein compare
Xcc-8004.2324.1 -0.6 -2.2 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Xcc-8004.1839.1 -0.6 -1.0 FIG01210863: hypothetical protein compare
Xcc-8004.1365.1 -0.6 -0.6 FIG01211058: hypothetical protein compare
Xcc-8004.397.1 -0.6 -2.3 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2559.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.5333.1 -0.6 -2.2 Transposase (class I) compare
Xcc-8004.1654.1 -0.6 -1.1 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.936.1 -0.6 -1.0 FIG01209778: hypothetical protein compare
Xcc-8004.983.1 -0.6 -2.1 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.2217.1 -0.6 -1.8 FIG01209779: hypothetical protein compare
Xcc-8004.4375.1 -0.6 -2.0 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.4233.1 -0.6 -1.5 two-component system sensor protein compare
Xcc-8004.1048.1 -0.6 -2.0 Transcriptional regulator lysR family compare
Xcc-8004.782.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.2700.1 -0.6 -4.1 hypothetical protein compare
Xcc-8004.3433.1 -0.6 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1955.1 -0.6 -2.7 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1567.1 -0.6 -2.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.3635.1 -0.6 -1.8 RNA polymerase ECF-type sigma factor compare
Xcc-8004.3360.1 -0.6 -2.8 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.1056.1 -0.6 -2.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.5140.1 -0.6 -1.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.1964.1 -0.6 -3.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.1409.1 -0.6 -1.4 Cation:proton antiporter compare
Xcc-8004.1504.1 -0.6 -0.8 type IV pili signal transduction protein PilI compare
Xcc-8004.1486.1 -0.6 -1.5 Coenzyme PQQ synthesis protein D compare
Xcc-8004.4025.1 -0.6 -4.0 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3303.1 -0.6 -1.7 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.3402.1 -0.6 -1.5 FIG01210246: hypothetical protein compare
Xcc-8004.2705.1 -0.6 -2.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.1959.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.2614.1 -0.6 -1.8 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3846.1 -0.6 -1.6 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Xcc-8004.2447.1 -0.6 -4.2 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.4322.1 -0.6 -1.1 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.1027.1 -0.6 -0.9 Two-component system sensor protein compare
Xcc-8004.4250.1 -0.6 -1.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.3957.1 -0.6 -1.9 DnaJ-class molecular chaperone CbpA compare
Xcc-8004.312.1 -0.6 -2.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.5135.1 -0.6 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.1947.1 -0.6 -2.7 hypothetical protein compare
Xcc-8004.2358.1 -0.6 -2.5 Segregation and condensation protein A compare
Xcc-8004.999.1 -0.6 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4630.1 -0.6 -1.5 FIG01210108: hypothetical protein compare
Xcc-8004.357.1 -0.6 -1.6 FIG01210225: hypothetical protein compare
Xcc-8004.1226.1 -0.6 -0.9 FIG01210021: hypothetical protein compare
Xcc-8004.4477.1 -0.6 -1.2 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.3655.1 -0.6 -1.0 FIG01210025: hypothetical protein compare
Xcc-8004.569.1 -0.6 -2.1 FIG01209918: hypothetical protein compare
Xcc-8004.1768.1 -0.6 -1.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4836.1 -0.6 -2.3 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1086.1 -0.6 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2420.1 -0.6 -2.4 PHA synthase subunit compare
Xcc-8004.4569.1 -0.6 -1.7 Periplasmic chorismate mutase I precursor (EC 5.4.99.5) compare
Xcc-8004.2421.1 -0.5 -4.5 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.4112.1 -0.5 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1164.1 -0.5 -0.9 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.413.1 -0.5 -2.4 FIG01211305: hypothetical protein compare
Xcc-8004.4586.1 -0.5 -2.7 FIG01212524: hypothetical protein compare
Xcc-8004.1764.1 -0.5 -1.5 FIG01209971: hypothetical protein compare
Xcc-8004.3128.1 -0.5 -2.5 COGs COG3737 compare
Xcc-8004.3878.1 -0.5 -3.9 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) compare
Xcc-8004.3741.1 -0.5 -1.5 Type III effector HrpW, hairpin with pectate lyase domain compare
Xcc-8004.1597.1 -0.5 -2.2 hypothetical protein compare
Xcc-8004.730.1 -0.5 -2.1 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) compare
Xcc-8004.5343.1 -0.5 -2.4 hypothetical protein compare
Xcc-8004.4635.1 -0.5 -1.3 hypothetical protein compare
Xcc-8004.3855.1 -0.5 -3.1 FIG01209965: hypothetical protein compare
Xcc-8004.1427.1 -0.5 -1.6 Type I antifreeze protein compare
Xcc-8004.1465.1 -0.5 -2.0 Transporter, LysE family compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms