Experiment set7IT051 for Pseudomonas fluorescens SBW25-INTG

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Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

200 most important genes:

  gene name fitness t score description  
PFLU_RS25645 -3.6 -2.5 acetolactate synthase small subunit compare
PFLU_RS30345 -3.6 -3.5 DUF2559 family protein compare
PFLU_RS26735 -3.6 -9.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS01625 -2.8 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS13540 -2.7 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24095 -2.7 -3.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS00310 -2.5 -2.2 twin transmembrane helix small protein compare
PFLU_RS24090 -2.4 -5.2 Holliday junction branch migration protein RuvA compare
PFLU_RS01315 -2.4 -2.3 Hsp33 family molecular chaperone HslO compare
PFLU_RS28645 -2.4 -15.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS05890 -2.3 -1.6 recombination regulator RecX compare
PFLU_RS22105 -2.3 -3.0 cysteine synthase CysM compare
PFLU_RS23220 -2.2 -3.6 tRNA-Arg compare
PFLU_RS28310 -2.2 -2.4 response regulator compare
PFLU_RS19165 -2.2 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04070 -2.1 -3.5 peptide chain release factor 3 compare
PFLU_RS25205 -2.0 -5.8 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS13010 -2.0 -4.7 Fe-S biogenesis protein NfuA compare
PFLU_RS19170 -2.0 -1.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS26565 -2.0 -2.3 rRNA maturation RNase YbeY compare
PFLU_RS18530 -1.9 -5.0 DNA translocase FtsK compare
PFLU_RS24085 -1.9 -5.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS24125 -1.9 -5.3 cold-shock protein compare
PFLU_RS07685 -1.9 -2.9 transcriptional repressor LexA compare
PFLU_RS20515 -1.9 -3.8 amidophosphoribosyltransferase compare
PFLU_RS25735 -1.9 -4.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS00175 -1.9 -9.6 tryptophan synthase subunit alpha compare
PFLU_RS18640 -1.8 -3.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS22740 -1.8 -5.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS04165 -1.8 -6.9 cell division protein ZapE compare
PFLU_RS25755 -1.7 -4.7 pantoate--beta-alanine ligase compare
PFLU_RS21495 -1.7 -1.2 TlpA family protein disulfide reductase compare
PFLU_RS08490 -1.7 -2.0 DEAD/DEAH box helicase compare
PFLU_RS25210 -1.7 -6.1 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS03870 -1.7 -7.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS22595 -1.7 -3.0 OmpA family protein compare
PFLU_RS25740 -1.7 -5.8 polynucleotide adenylyltransferase PcnB compare
PFLU_RS02625 -1.7 -8.0 ribonuclease R compare
PFLU_RS07665 -1.7 -1.2 type I DNA topoisomerase compare
PFLU_RS25640 -1.7 -10.4 ketol-acid reductoisomerase compare
PFLU_RS07275 -1.7 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS05690 -1.7 -1.6 Grx4 family monothiol glutaredoxin compare
PFLU_RS05885 -1.7 -5.0 recombinase RecA compare
PFLU_RS02775 -1.6 -1.9 urease accessory protein UreF compare
PFLU_RS07725 -1.6 -1.9 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS18635 -1.6 -3.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS22600 -1.6 -2.1 RNA polymerase sigma factor SigX compare
PFLU_RS28655 -1.6 -9.8 HAD family hydrolase compare
PFLU_RS01620 -1.6 -8.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18615 -1.6 -2.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS04015 -1.6 -2.1 1-phosphofructokinase compare
PFLU_RS25715 -1.6 -7.7 RNA polymerase-binding protein DksA compare
PFLU_RS21240 -1.6 -2.6 hypothetical protein compare
PFLU_RS25875 -1.6 -3.2 transcription elongation factor GreA compare
PFLU_RS01285 -1.6 -1.5 HAMP domain-containing protein compare
PFLU_RS09305 -1.6 -10.0 hypothetical protein compare
PFLU_RS29545 -1.6 -8.9 hydrogen peroxide-inducible genes activator compare
PFLU_RS04470 -1.6 -8.8 histidinol dehydrogenase compare
PFLU_RS01610 -1.5 -8.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS29090 -1.5 -7.3 exopolyphosphatase compare
PFLU_RS18955 -1.5 -8.7 hydroxymethylglutaryl-CoA lyase compare
PFLU_RS14440 -1.5 -1.8 hypothetical protein compare
PFLU_RS19375 -1.5 -8.8 branched-chain amino acid aminotransferase compare
PFLU_RS08165 -1.5 -1.7 acyl carrier protein compare
PFLU_RS27910 -1.5 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS00180 -1.5 -7.1 tryptophan synthase subunit beta compare
PFLU_RS28265 -1.5 -3.2 malonate decarboxylase subunit delta compare
PFLU_RS13085 -1.5 -3.3 DUF1315 family protein compare
PFLU_RS08155 -1.5 -3.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS09535 -1.5 -1.6 TIGR03750 family conjugal transfer protein compare
PFLU_RS01875 -1.5 -1.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS01605 -1.4 -6.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04140 -1.4 -1.0 response regulator transcription factor compare
PFLU_RS19665 -1.4 -1.8 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS08600 -1.4 -2.8 glutaredoxin family protein compare
PFLU_RS14210 -1.4 -2.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS05250 -1.4 -3.1 elongation factor 4 compare
PFLU_RS18665 -1.4 -2.8 NADH-quinone oxidoreductase subunit L compare
PFLU_RS27465 -1.4 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS31290 -1.4 -1.7 EamA family transporter compare
PFLU_RS20580 -1.4 -8.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS23240 -1.4 -6.5 magnesium transporter compare
PFLU_RS28535 -1.4 -9.9 dihydroxy-acid dehydratase compare
PFLU_RS25730 -1.4 -10.1 PAS domain S-box protein compare
PFLU_RS21315 -1.4 -7.1 GTP cyclohydrolase I FolE compare
PFLU_RS20575 -1.4 -4.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS25200 -1.4 -6.6 protoheme IX farnesyltransferase compare
PFLU_RS25360 -1.3 -5.5 glutamate 5-kinase compare
PFLU_RS29215 -1.3 -8.1 response regulator transcription factor compare
PFLU_RS15610 -1.3 -4.0 helix-turn-helix transcriptional regulator compare
PFLU_RS02565 -1.3 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS23380 -1.3 -0.9 HAD-IB family hydrolase compare
PFLU_RS18625 -1.3 -5.4 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS02490 -1.3 -7.7 phosphoserine phosphatase SerB compare
PFLU_RS05910 -1.3 -2.6 response regulator transcription factor compare
PFLU_RS14775 -1.3 -2.0 enoyl-CoA hydratase compare
PFLU_RS02980 -1.3 -2.2 precorrin-8X methylmutase compare
PFLU_RS31545 -1.3 -2.3 LysR family transcriptional regulator compare
PFLU_RS24900 -1.3 -3.1 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS15795 -1.2 -2.4 hypothetical protein compare
PFLU_RS00065 -1.2 -5.6 lysophospholipid acyltransferase compare
PFLU_RS01900 -1.2 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28695 -1.2 -4.4 phosphoglycerate dehydrogenase compare
PFLU_RS12660 -1.2 -4.2 hypothetical protein compare
PFLU_RS19550 -1.2 -1.3 ABC transporter ATP-binding protein compare
PFLU_RS03610 -1.2 -4.2 redox-regulated ATPase YchF compare
PFLU_RS18505 -1.2 -6.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25800 -1.2 -3.8 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS01965 -1.2 -0.8 ATP-dependent protease subunit HslV compare
PFLU_RS29885 -1.2 -5.7 LysR family transcriptional regulator compare
PFLU_RS22455 -1.2 -6.0 hypothetical protein compare
PFLU_RS04075 -1.2 -1.6 hypothetical protein compare
PFLU_RS25215 -1.1 -7.2 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS05875 -1.1 -3.4 lysozyme compare
PFLU_RS18675 -1.1 -2.3 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS12975 -1.1 -2.8 DUF934 domain-containing protein compare
PFLU_RS00415 -1.1 -0.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS30165 -1.1 -5.4 ParA family protein compare
PFLU_RS21825 -1.1 -5.8 ketoacyl-ACP synthase III compare
PFLU_RS29480 -1.1 -2.0 exodeoxyribonuclease III compare
PFLU_RS04455 -1.1 -3.7 BolA family transcriptional regulator compare
PFLU_RS24690 -1.1 -7.2 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS29400 -1.1 -1.1 DUF1127 domain-containing protein compare
PFLU_RS01880 -1.1 -1.3 twin-arginine translocase subunit TatC compare
PFLU_RS04465 -1.1 -5.3 ATP phosphoribosyltransferase compare
PFLU_RS29755 -1.1 -6.8 phosphate ABC transporter ATP-binding protein compare
PFLU_RS02590 -1.1 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS29900 -1.1 -7.0 DNA helicase II compare
PFLU_RS27475 -1.1 -3.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS16580 -1.1 -2.7 hypothetical protein compare
PFLU_RS07255 -1.1 -2.2 sulfurtransferase TusA family protein compare
PFLU_RS22520 -1.0 -2.3 GntR family transcriptional regulator compare
PFLU_RS21300 -1.0 -3.6 cysteine hydrolase compare
PFLU_RS12915 -1.0 -2.4 methyltransferase domain-containing protein compare
PFLU_RS18550 -1.0 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS28320 -1.0 -1.2 glutathione synthase compare
PFLU_RS22690 -1.0 -6.4 methylisocitrate lyase compare
PFLU_RS29815 -1.0 -2.7 aspartate ammonia-lyase compare
PFLU_RS00155 -1.0 -4.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS25220 -1.0 -5.5 ubiquinol oxidase subunit II compare
PFLU_RS31045 -1.0 -5.9 ribosome modulation factor compare
PFLU_RS22250 -1.0 -2.3 hypothetical protein compare
PFLU_RS21925 -1.0 -2.5 YecA family protein compare
PFLU_RS01885 -1.0 -1.7 Sec-independent protein translocase subunit TatB compare
PFLU_RS18940 -1.0 -5.3 acyl-CoA dehydrogenase compare
PFLU_RS29875 -1.0 -6.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS18725 -1.0 -1.3 alpha/beta hydrolase compare
PFLU_RS07645 -1.0 -2.8 hypothetical protein compare
PFLU_RS08100 -1.0 -4.2 histidinol-phosphate transaminase compare
PFLU_RS24175 -1.0 -5.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS18805 -1.0 -2.7 ABC transporter ATP-binding protein compare
PFLU_RS00445 -1.0 -2.0 hypothetical protein compare
PFLU_RS03555 -1.0 -1.1 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS24160 -1.0 -3.1 HAMP domain-containing protein compare
PFLU_RS26595 -1.0 -1.0 lipoprotein compare
PFLU_RS31445 -1.0 -2.1 colicin immunity protein compare
PFLU_RS29905 -1.0 -4.2 Tim44 domain-containing protein compare
PFLU_RS20330 -1.0 -1.9 cold-shock protein compare
PFLU_RS30590 -1.0 -1.2 hypothetical protein compare
PFLU_RS28165 -0.9 -5.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS26635 -0.9 -4.0 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS27490 -0.9 -7.0 YeaH/YhbH family protein compare
PFLU_RS24330 -0.9 -4.3 phosphogluconate dehydratase compare
PFLU_RS11380 -0.9 -1.7 sarcosine oxidase subunit delta compare
PFLU_RS26640 -0.9 -6.1 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS24455 -0.9 -3.3 membrane protein FxsA compare
PFLU_RS18515 -0.9 -1.2 fluoride efflux transporter CrcB compare
PFLU_RS09575 -0.9 -2.6 FadR family transcriptional regulator compare
PFLU_RS25225 -0.9 -4.8 disulfide bond formation protein B compare
PFLU_RS25920 -0.9 -1.7 outer membrane protein assembly factor BamE compare
PFLU_RS00465 -0.9 -6.2 spore maturation protein compare
PFLU_RS20565 -0.9 -6.3 3-isopropylmalate dehydrogenase compare
PFLU_RS00695 -0.9 -1.5 DUF2789 domain-containing protein compare
PFLU_RS11415 -0.9 -1.4 protein glxC compare
PFLU_RS20040 -0.9 -3.0 GntR family transcriptional regulator compare
PFLU_RS17580 -0.9 -2.1 repressor LexA compare
PFLU_RS01320 -0.9 -4.8 phosphoenolpyruvate carboxykinase compare
PFLU_RS22385 -0.9 -5.3 oxygen-independent coproporphyrinogen III oxidase compare
PFLU_RS05630 -0.9 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS24905 -0.9 -6.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS10430 -0.9 -2.0 peptidase compare
PFLU_RS08105 -0.9 -4.1 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS06310 -0.9 -3.7 sigma E protease regulator RseP compare
PFLU_RS08160 -0.9 -4.3 sugar transferase compare
PFLU_RS07810 -0.9 -5.7 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS16200 -0.9 -3.5 4-hydroxyproline epimerase compare
PFLU_RS14450 -0.9 -1.6 AzlD domain-containing protein compare
PFLU_RS18755 -0.9 -3.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS29880 -0.8 -5.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS12230 -0.8 -3.6 carboxymuconolactone decarboxylase family protein compare
PFLU_RS08505 -0.8 -3.1 protease HtpX compare
PFLU_RS03665 -0.8 -3.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS02580 -0.8 -4.7 FtsH protease activity modulator HflK compare
PFLU_RS20095 -0.8 -3.0 glyoxalase compare
PFLU_RS30215 -0.8 -4.2 KTSC domain-containing protein compare
PFLU_RS30160 -0.8 -2.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS27495 -0.8 -7.0 SpoVR family protein compare
PFLU_RS08630 -0.8 -3.0 molybdopterin molybdotransferase MoeA compare
PFLU_RS24560 -0.8 -3.8 site-specific tyrosine recombinase XerD compare
PFLU_RS13750 -0.8 -1.5 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs in Pseudomonas fluorescens SBW25-INTG

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs across organisms