Experiment set7IT050 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2011.1 -5.2 -3.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.5133.1 -2.9 -2.9 FIG01212313: hypothetical protein compare
Xcc-8004.623.1 -2.7 -2.5 Phosphoserine phosphatase compare
Xcc-8004.601.1 -2.3 -7.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3792.1 -2.0 -2.0 Mobile element protein compare
Xcc-8004.2406.1 -2.0 -9.8 Manganese transport protein MntH compare
Xcc-8004.3875.1 -1.9 -1.4 FIG01212144: hypothetical protein compare
Xcc-8004.659.1 -1.9 -3.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1241.1 -1.7 -5.0 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3376.1 -1.7 -3.7 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.2012.1 -1.7 -6.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.171.1 -1.6 -1.6 hypothetical protein compare
Xcc-8004.2357.1 -1.5 -3.5 Segregation and condensation protein B compare
Xcc-8004.1676.1 -1.5 -6.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.2422.1 -1.5 -2.0 Putative stress-responsive transcriptional regulator compare
Xcc-8004.5368.1 -1.5 -3.4 FIG01210868: hypothetical protein compare
Xcc-8004.1790.1 -1.5 -4.1 Zinc uptake regulation protein ZUR compare
Xcc-8004.127.1 -1.4 -1.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3898.1 -1.4 -1.3 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.4510.1 -1.3 -1.8 ATP binding component of ABC-transporter compare
Xcc-8004.4439.1 -1.3 -7.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.385.1 -1.3 -2.1 FIG01212287: hypothetical protein compare
Xcc-8004.2879.1 -1.3 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.2346.1 -1.2 -2.0 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.657.1 -1.2 -5.0 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1809.1 -1.2 -2.2 extracellular serine protease compare
Xcc-8004.2699.1 -1.1 -6.5 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4669.1 -1.1 -7.6 Transcriptional regulator NtrC family compare
Xcc-8004.4908.1 -1.1 -2.9 hypothetical protein compare
Xcc-8004.4073.1 -1.1 -7.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1622.1 -1.1 -2.5 Membrane protein with DUF350 domain compare
Xcc-8004.2217.1 -1.1 -2.8 FIG01209779: hypothetical protein compare
Xcc-8004.4620.1 -1.0 -4.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.5253.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.2356.1 -1.0 -3.6 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.1839.1 -1.0 -1.7 FIG01210863: hypothetical protein compare
Xcc-8004.4200.1 -1.0 -1.8 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1249.1 -1.0 -3.7 Transcriptional regulator compare
Xcc-8004.1436.1 -1.0 -1.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.1362.1 -1.0 -2.7 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.3473.1 -1.0 -1.6 FIG01213437: hypothetical protein compare
Xcc-8004.3726.1 -1.0 -1.7 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.2169.1 -1.0 -2.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.459.1 -1.0 -1.8 4-hydroxybenzoate transporter compare
Xcc-8004.4231.1 -1.0 -1.2 two-component system regulatory protein compare
Xcc-8004.410.1 -1.0 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4820.1 -0.9 -1.4 FIG01211334: hypothetical protein compare
Xcc-8004.787.1 -0.9 -1.1 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.4306.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.3049.1 -0.9 -4.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3087.1 -0.9 -3.0 FIG01211583: hypothetical protein compare
Xcc-8004.1058.1 -0.9 -1.6 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.2705.1 -0.9 -2.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.2185.1 -0.9 -1.9 Nicotinamidase (EC 3.5.1.19) compare
Xcc-8004.1236.1 -0.9 -2.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3230.1 -0.9 -1.8 Phage DNA invertase compare
Xcc-8004.4596.1 -0.9 -5.1 hypothetical protein compare
Xcc-8004.1838.1 -0.9 -1.1 FIG002958: hypothetical protein compare
Xcc-8004.3903.1 -0.9 -2.7 Mlr6856 protein compare
Xcc-8004.1718.1 -0.9 -2.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.5367.1 -0.9 -3.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.2497.1 -0.9 -0.9 Mobile element protein compare
Xcc-8004.1919.1 -0.9 -3.1 FIG056164: rhomboid family serine protease compare
Xcc-8004.3119.1 -0.9 -2.5 GTP-binding protein HflX compare
Xcc-8004.3433.1 -0.9 -3.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2930.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.1615.1 -0.8 -1.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4697.1 -0.8 -1.7 FIG01210654: hypothetical protein compare
Xcc-8004.4224.1 -0.8 -2.6 Hydrogen peroxide-inducible genes activator compare
Xcc-8004.2168.1 -0.8 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.574.1 -0.8 -3.6 Di-/tripeptide transporter compare
Xcc-8004.1162.1 -0.8 -1.7 FIG01210644: hypothetical protein compare
Xcc-8004.3595.1 -0.8 -1.3 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.397.1 -0.8 -2.6 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2921.1 -0.8 -1.9 ferrous iron transport protein compare
Xcc-8004.409.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.3171.1 -0.8 -2.2 FIG01213081: hypothetical protein compare
Xcc-8004.1437.1 -0.8 -2.6 Kup system potassium uptake protein compare
Xcc-8004.1372.1 -0.7 -1.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2343.1 -0.7 -1.3 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.4275.1 -0.7 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.2266.1 -0.7 -1.3 FIG01211351: hypothetical protein compare
Xcc-8004.1359.1 -0.7 -2.8 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1771.1 -0.7 -2.1 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.3855.1 -0.7 -3.3 FIG01209965: hypothetical protein compare
Xcc-8004.2569.1 -0.7 -1.3 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.5343.1 -0.7 -3.4 hypothetical protein compare
Xcc-8004.3674.1 -0.7 -2.0 FIG01209931: hypothetical protein compare
Xcc-8004.4457.1 -0.7 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1763.1 -0.7 -1.4 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1673.1 -0.7 -2.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Xcc-8004.3322.1 -0.7 -1.0 FIG01211446: hypothetical protein compare
Xcc-8004.4477.1 -0.7 -0.9 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.2666.1 -0.7 -2.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1454.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.5185.1 -0.7 -1.8 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.1660.1 -0.7 -0.7 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4752.1 -0.7 -0.8 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1222.1 -0.7 -1.6 Glyoxalase family protein compare
Xcc-8004.764.1 -0.7 -1.3 FIG01213873: hypothetical protein compare
Xcc-8004.1619.1 -0.7 -1.9 PspA/IM30 family protein compare
Xcc-8004.4486.1 -0.7 -5.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.1247.1 -0.7 -1.9 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.3108.1 -0.7 -1.9 Regulatory protein RecX compare
Xcc-8004.1822.1 -0.7 -1.4 Transcriptional regulator, MarR family compare
Xcc-8004.4039.1 -0.7 -1.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1118.1 -0.7 -1.2 hypothetical protein compare
Xcc-8004.3310.1 -0.7 -2.1 Chromosome partition protein smc compare
Xcc-8004.4465.1 -0.6 -3.1 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.1491.1 -0.6 -5.0 Glycosyltransferase compare
Xcc-8004.5302.1 -0.6 -1.7 FIG039767: hypothetical protein compare
Xcc-8004.1380.1 -0.6 -1.3 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3320.1 -0.6 -1.1 FIG01209869: hypothetical protein compare
Xcc-8004.1967.1 -0.6 -3.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.2385.1 -0.6 -4.5 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.2655.1 -0.6 -2.2 FIG024738: Hypothetical protein compare
Xcc-8004.855.1 -0.6 -1.6 ElaA protein compare
Xcc-8004.3479.1 -0.6 -1.4 aklaviketone reductase compare
Xcc-8004.4558.1 -0.6 -1.6 ABC transporter permease compare
Xcc-8004.2386.1 -0.6 -4.2 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1334.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.2618.1 -0.6 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.1955.1 -0.6 -3.5 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3426.1 -0.6 -2.6 Chaperone protein DnaJ compare
Xcc-8004.3968.1 -0.6 -1.4 Mobile element protein compare
Xcc-8004.2711.1 -0.6 -1.3 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.2401.1 -0.6 -1.3 FIG00545367: hypothetical protein compare
Xcc-8004.5352.1 -0.6 -1.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.4824.1 -0.6 -3.3 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4710.1 -0.6 -1.7 FIG01211889: hypothetical protein compare
Xcc-8004.1964.1 -0.6 -4.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.3374.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.1832.1 -0.6 -1.6 FIG01210449: hypothetical protein compare
Xcc-8004.5135.1 -0.6 -1.7 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.683.1 -0.6 -1.8 hypothetical protein compare
Xcc-8004.5114.1 -0.6 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4430.1 -0.6 -1.2 General secretion pathway protein G compare
Xcc-8004.4514.1 -0.6 -4.3 Glycosyltransferase compare
Xcc-8004.2895.1 -0.6 -2.1 FIG01210907: hypothetical protein compare
Xcc-8004.4398.1 -0.6 -2.9 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.649.1 -0.6 -0.9 hypothetical protein compare
Xcc-8004.3816.1 -0.6 -2.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4112.1 -0.6 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.773.1 -0.6 -2.4 Transcriptional regulator marR family compare
Xcc-8004.3385.1 -0.5 -1.3 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.1727.1 -0.5 -1.3 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2358.1 -0.5 -2.8 Segregation and condensation protein A compare
Xcc-8004.4814.1 -0.5 -1.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.4829.1 -0.5 -2.2 Transamidase GatB domain protein compare
Xcc-8004.3817.1 -0.5 -2.5 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.195.1 -0.5 -0.7 phosphoesterase, putative compare
Xcc-8004.3445.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.576.1 -0.5 -1.7 FIG01210281: hypothetical protein compare
Xcc-8004.1808.1 -0.5 -1.6 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.1890.1 -0.5 -2.3 hypothetical protein compare
Xcc-8004.4376.1 -0.5 -2.0 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.1826.1 -0.5 -1.9 FIG01217340: hypothetical protein compare
Xcc-8004.4473.1 -0.5 -4.3 FIG01212400: hypothetical protein compare
Xcc-8004.4986.1 -0.5 -1.2 FIG01209754: hypothetical protein compare
Xcc-8004.3741.1 -0.5 -1.6 Type III effector HrpW, hairpin with pectate lyase domain compare
Xcc-8004.3303.1 -0.5 -1.5 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.718.1 -0.5 -0.6 hypothetical protein compare
Xcc-8004.2652.1 -0.5 -1.6 response regulator compare
Xcc-8004.4341.1 -0.5 -1.9 FIG01210371: hypothetical protein compare
Xcc-8004.722.1 -0.5 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1244.1 -0.5 -2.7 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.1941.1 -0.5 -2.4 Transcription elongation factor GreB compare
Xcc-8004.4375.1 -0.5 -1.7 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.2700.1 -0.5 -3.0 hypothetical protein compare
Xcc-8004.1906.1 -0.5 -1.6 lipoprotein compare
Xcc-8004.1653.1 -0.5 -2.6 FIG01210004: hypothetical protein compare
Xcc-8004.4221.1 -0.5 -1.9 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.4252.1 -0.5 -1.3 O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) compare
Xcc-8004.3668.1 -0.5 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.482.1 -0.5 -1.9 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.2447.1 -0.5 -3.4 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.2412.1 -0.5 -3.5 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.1520.1 -0.5 -2.0 RebB protein compare
Xcc-8004.401.1 -0.5 -1.1 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.1704.1 -0.5 -1.8 FIG01209781: hypothetical protein compare
Xcc-8004.5366.1 -0.5 -3.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.1374.1 -0.5 -1.0 Lipoprotein, putative compare
Xcc-8004.3054.1 -0.5 -0.6 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1336.1 -0.5 -1.8 two-component system sensor protein compare
Xcc-8004.1158.1 -0.5 -1.2 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.2319.1 -0.5 -1.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.704.1 -0.5 -1.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.3211.1 -0.5 -0.8 protein of unknown function DUF88 compare
Xcc-8004.2672.1 -0.5 -0.8 hypothetical protein compare
Xcc-8004.4329.1 -0.5 -0.9 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.1365.1 -0.5 -0.8 FIG01211058: hypothetical protein compare
Xcc-8004.543.1 -0.5 -1.3 FIG01210004: hypothetical protein compare
Xcc-8004.3326.1 -0.5 -1.4 FIG01212390: hypothetical protein compare
Xcc-8004.322.1 -0.5 -1.4 Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family compare
Xcc-8004.2520.1 -0.5 -1.4 DNA repair protein RadC compare
Xcc-8004.2273.1 -0.5 -1.9 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Xcc-8004.707.1 -0.5 -1.9 FIG01211274: hypothetical protein compare
Xcc-8004.3752.1 -0.5 -0.7 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4427.1 -0.5 -1.5 General secretion pathway protein J compare
Xcc-8004.1728.1 -0.5 -1.4 FIG01210339: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant control:fungal media Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms