Experiment set7IT050 for Shewanella amazonensis SB2B
outer cut, LB soft agar motility assay
Group: motilityMedia: LB + Agar (3 g/L)
Culturing: SB2B_ML5, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 1/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 43 genes in this experiment
For motility Agar in Shewanella amazonensis SB2B
For motility Agar across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Ascorbate and aldarate metabolism
- Aminosugars metabolism
- Lipopolysaccharide biosynthesis
- Glycerophospholipid metabolism
- Ether lipid metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - lacto and neolacto series
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Thiamine metabolism
- Riboflavin metabolism
- Nicotinate and nicotinamide metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| thiosulfate disproportionation IV (rhodanese) | 1 | 1 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin biosynthesis III | 3 | 2 | 1 |
| cardiolipin biosynthesis I | 3 | 2 | 1 |
| sulfide oxidation IV (mitochondria) | 5 | 2 | 1 |
| phosphatidylglycerol biosynthesis II | 6 | 6 | 1 |
| phosphatidylglycerol biosynthesis I | 6 | 6 | 1 |
| toxoflavin biosynthesis | 7 | 4 | 1 |
| flavin biosynthesis I (bacteria and plants) | 9 | 9 | 1 |
| flavin biosynthesis III (fungi) | 9 | 8 | 1 |
| flavin biosynthesis II (archaea) | 10 | 6 | 1 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 10 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 10 | 1 |
| type I lipoteichoic acid biosynthesis (S. aureus) | 17 | 5 | 1 |
| superpathway of phospholipid biosynthesis II (plants) | 28 | 10 | 1 |