Experiment set7IT050 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Hexanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02543 +10.8 32.8 GntR family transcriptional regulator compare
H281DRAFT_05869 +8.3 28.8 2-iminobutanoate/2-iminopropanoate deaminase compare
H281DRAFT_05561 +6.5 42.4 transcriptional regulator, TetR family compare
H281DRAFT_04623 +2.6 14.5 transcriptional regulator, TetR family compare
H281DRAFT_02086 +2.2 16.0 transcriptional regulator, MerR family compare
H281DRAFT_01868 +2.0 2.0 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_06056 +2.0 15.5 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03411 +2.0 1.8 hypothetical protein compare
H281DRAFT_01108 +1.9 4.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05974 +1.7 2.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_04683 +1.7 9.9 glycolate oxidase compare
H281DRAFT_05140 +1.6 1.1 Thiosulfate reductase cytochrome b subunit compare
H281DRAFT_04201 +1.5 1.8 O-antigen ligase compare
H281DRAFT_01319 +1.5 2.5 Uncharacterized protein, UPF0264 family compare
H281DRAFT_04681 +1.5 9.0 glycolate oxidase iron-sulfur subunit compare
H281DRAFT_02170 +1.4 4.6 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04515 +1.4 2.6 RNAse G compare
H281DRAFT_04369 +1.3 4.2 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_02378 +1.3 7.7 amino acid/amide ABC transporter membrane protein 1, HAAT family compare
H281DRAFT_06266 +1.3 3.5 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_04682 +1.3 5.7 glycolate oxidase FAD binding subunit compare
H281DRAFT_00240 +1.3 6.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01867 +1.3 3.8 NADPH2:quinone reductase compare
H281DRAFT_06422 +1.3 3.1 hypothetical protein compare
H281DRAFT_03738 +1.2 4.1 hypothetical protein compare
H281DRAFT_01632 +1.2 10.0 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04362 +1.2 3.4 RNAse III (EC 3.1.26.3) compare
H281DRAFT_05314 +1.2 1.8 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_05705 +1.2 2.5 hypothetical protein compare
H281DRAFT_01866 +1.2 2.3 taurine dioxygenase compare
H281DRAFT_02643 +1.2 2.0 hypothetical protein compare
H281DRAFT_05389 +1.1 2.0 protein of unknown function (DUF3331) compare
H281DRAFT_02542 +1.1 1.3 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_02379 +1.1 7.5 amino acid/amide ABC transporter membrane protein 2, HAAT family compare
H281DRAFT_05943 +1.1 1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_05315 +1.1 2.1 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_05000 +1.1 3.0 ATP synthase in type III secretion protein N compare
H281DRAFT_04477 +1.1 6.0 transcriptional regulator, LysR family compare
H281DRAFT_01239 +1.1 1.4 hypothetical protein compare
H281DRAFT_06135 +1.1 1.9 hypothetical protein compare
H281DRAFT_00339 +1.0 1.4 Uncharacterized membrane protein compare
H281DRAFT_00286 +1.0 2.8 transaldolase compare
H281DRAFT_03637 +1.0 2.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06295 +1.0 2.4 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_00819 +1.0 1.3 competence protein ComEA compare
H281DRAFT_05286 +1.0 1.9 transcriptional regulator, LysR family compare
H281DRAFT_02376 +1.0 5.9 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_04594 +1.0 2.7 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_03094 +1.0 1.4 transcriptional regulator, MarR family compare
H281DRAFT_03184 +1.0 1.3 cation diffusion facilitator family transporter compare
H281DRAFT_04246 +1.0 2.7 glutathione S-transferase compare
H281DRAFT_00997 +1.0 2.2 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_04368 +1.0 6.6 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_04857 +1.0 2.0 hypothetical protein compare
H281DRAFT_02561 +1.0 2.3 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_04406 +1.0 2.0 putative RNA-binding protein, YhbY family compare
H281DRAFT_01883 +1.0 1.2 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_06388 +1.0 2.3 Sugar phosphate permease compare
H281DRAFT_04004 +1.0 2.8 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_05199 +1.0 5.1 transcriptional regulator, TetR family compare
H281DRAFT_01007 +1.0 2.4 hypothetical protein compare
H281DRAFT_05483 +1.0 1.6 protein of unknown function (DUF1840) compare
H281DRAFT_02700 +1.0 2.5 feruloyl esterase compare
H281DRAFT_05899 +1.0 1.7 hypothetical protein compare
H281DRAFT_05744 +1.0 1.7 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_05962 +0.9 1.1 RraA famliy compare
H281DRAFT_01923 +0.9 1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_05041 +0.9 1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00236 +0.9 3.4 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_03766 +0.9 3.5 glucose 1-dehydrogenase compare
H281DRAFT_06453 +0.9 1.8 Protein required for attachment to host cells compare
H281DRAFT_00268 +0.9 5.3 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_03748 +0.9 1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00914 +0.9 2.9 Uncharacterized conserved protein YdiU, UPF0061 family compare
H281DRAFT_00506 +0.9 1.2 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_05966 +0.9 2.1 transcriptional regulator, LysR family compare
H281DRAFT_01105 +0.9 2.8 transcriptional regulator, AraC family compare
H281DRAFT_03448 +0.9 2.0 Predicted ester cyclase compare
H281DRAFT_01069 +0.9 1.5 Cytosine/adenosine deaminase compare
H281DRAFT_00759 +0.9 2.4 sulfonate transport system permease protein compare
H281DRAFT_00740 +0.9 3.4 Predicted dehydrogenase compare
H281DRAFT_05434 +0.9 3.1 Predicted amidohydrolase compare
H281DRAFT_03849 +0.9 1.7 protein of unknown function (DUF4863) compare
H281DRAFT_00530 +0.9 0.9 uncharacterized protein compare
H281DRAFT_01441 +0.9 1.4 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_01403 +0.9 3.1 hypothetical protein compare
H281DRAFT_04021 +0.9 2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase /GTP cyclohydrolase II compare
H281DRAFT_01827 +0.9 1.2 hypothetical protein compare
H281DRAFT_02231 +0.9 1.3 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04684 +0.9 3.2 D-lactate dehydrogenase (cytochrome) compare
H281DRAFT_01111 +0.9 1.1 transcriptional regulator, DeoR family compare
H281DRAFT_06576 +0.8 1.8 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_00528 +0.8 2.5 hypothetical protein compare
H281DRAFT_03315 +0.8 1.6 HSP20 family protein compare
H281DRAFT_03192 +0.8 1.7 D-methionine transport system substrate-binding protein compare
H281DRAFT_00125 +0.8 3.3 Protein of unknown function (DUF2486) compare
H281DRAFT_01131 +0.8 2.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_06025 +0.8 3.1 chromate transporter compare
H281DRAFT_03855 +0.8 2.4 Sugar phosphate isomerase/epimerase compare
H281DRAFT_04169 +0.8 3.1 outer membrane protein, multidrug efflux system compare
H281DRAFT_00419 +0.8 2.4 transcriptional regulator, LacI family compare
H281DRAFT_03154 +0.8 2.0 two-component system, NarL family, sensor kinase compare
H281DRAFT_00518 +0.8 1.7 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_00808 +0.8 2.3 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_06170 +0.8 1.3 hypothetical protein compare
H281DRAFT_03719 +0.8 2.2 Zn-dependent hydrolases, including glyoxylases compare
H281DRAFT_05090 +0.8 1.9 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_04933 +0.8 1.3 Nitroreductase compare
H281DRAFT_04425 +0.8 1.3 hypothetical protein compare
H281DRAFT_01756 +0.8 1.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_06175 +0.8 2.2 DNA repair exonuclease compare
H281DRAFT_01029 +0.8 2.1 peptide/nickel transport system permease protein compare
H281DRAFT_02736 +0.8 2.3 uncharacterized peroxidase-related enzyme compare
H281DRAFT_05813 +0.8 3.0 sensor histidine kinase inhibitor, KipI family compare
H281DRAFT_04263 +0.8 4.2 putative redox protein compare
H281DRAFT_01256 +0.8 2.6 hypothetical protein compare
H281DRAFT_05005 +0.8 1.6 type III secretion protein HrpB1 compare
H281DRAFT_03312 +0.8 3.7 PAS domain S-box-containing protein compare
H281DRAFT_03864 +0.8 2.5 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_05610 +0.8 2.1 hypothetical protein compare
H281DRAFT_01524 +0.8 2.1 D-methionine transport system substrate-binding protein compare
H281DRAFT_05952 +0.8 1.1 transcriptional regulator, LysR family compare
H281DRAFT_04858 +0.8 0.9 hypothetical protein compare
H281DRAFT_01792 +0.8 2.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02944 +0.8 1.8 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_02539 +0.8 2.7 Sugar phosphate permease compare
H281DRAFT_02726 +0.8 1.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase compare
H281DRAFT_03258 +0.8 2.4 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit (EC 4.1.1.68) compare
H281DRAFT_00248 +0.8 1.7 hypothetical protein compare
H281DRAFT_01654 +0.8 1.9 3-phenylpropionate/cinnamic acid dioxygenase, small subunit compare
H281DRAFT_01390 +0.8 1.2 hypothetical protein compare
H281DRAFT_04171 +0.8 3.3 membrane fusion protein, multidrug efflux system compare
H281DRAFT_00733 +0.7 1.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02375 +0.7 2.6 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_01512 +0.7 1.6 transcriptional regulator, IclR family compare
H281DRAFT_01061 +0.7 1.4 hypothetical protein compare
H281DRAFT_05880 +0.7 1.7 Aspartate/methionine/tyrosine aminotransferase compare
H281DRAFT_00773 +0.7 1.8 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_03221 +0.7 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05978 +0.7 2.9 Sugar lactone lactonase YvrE compare
H281DRAFT_01322 +0.7 0.9 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_05279 +0.7 1.1 malonate decarboxylase beta subunit compare
H281DRAFT_01375 +0.7 1.8 LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway compare
H281DRAFT_03521 +0.7 1.5 hypothetical protein compare
H281DRAFT_01721 +0.7 1.6 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_01681 +0.7 2.1 Acyl dehydratase compare
H281DRAFT_05243 +0.7 1.5 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_04382 +0.7 2.5 hypothetical protein compare
H281DRAFT_04687 +0.7 4.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_00267 +0.7 2.0 chromate transporter compare
H281DRAFT_05468 +0.7 1.4 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_00106 +0.7 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04840 +0.7 3.6 Uncharacterized protein conserved in bacteria compare
H281DRAFT_02818 +0.7 2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04662 +0.7 2.9 paraquat-inducible protein A compare
H281DRAFT_03536 +0.7 4.3 acetyltransferase compare
H281DRAFT_04228 +0.7 3.0 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_03289 +0.7 1.6 Glycosyltransferase, GT2 family compare
H281DRAFT_01908 +0.7 2.1 Cytochrome c553 compare
H281DRAFT_06556 +0.7 1.8 hypothetical protein compare
H281DRAFT_01366 +0.7 2.2 hypothetical protein compare
H281DRAFT_03795 +0.7 1.7 hypothetical protein compare
H281DRAFT_00992 +0.7 1.6 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_02556 +0.7 1.6 Outer membrane protein (porin) compare
H281DRAFT_02772 +0.7 2.2 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_01767 +0.7 1.0 hypothetical protein compare
H281DRAFT_05265 +0.7 1.7 hypothetical protein compare
H281DRAFT_01430 +0.7 1.9 succinoglycan biosynthesis protein ExoO compare
H281DRAFT_00406 +0.7 1.3 Signal transduction histidine kinase compare
H281DRAFT_05812 +0.7 1.9 biotin-dependent carboxylase uncharacterized domain-containing protein compare
H281DRAFT_01679 +0.7 1.2 shikimate dehydrogenase (EC 1.1.1.25) compare
H281DRAFT_00682 +0.7 2.5 Acyl-CoA dehydrogenases compare
H281DRAFT_03502 +0.7 1.3 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_03306 +0.7 1.0 Cytochrome c, mono- and diheme variants compare
H281DRAFT_06011 +0.7 1.3 SSU ribosomal protein S21P compare
H281DRAFT_05232 +0.7 4.5 putative serine protein kinase, PrkA compare
H281DRAFT_05647 +0.7 2.1 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_05999 +0.7 1.8 hypothetical protein compare
H281DRAFT_02781 +0.7 2.3 Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains compare
H281DRAFT_03443 +0.7 1.9 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05879 +0.7 1.6 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_04535 +0.7 1.2 quaternary ammonium compound-resistance protein SugE compare
H281DRAFT_04229 +0.7 4.2 glycerol kinase compare
H281DRAFT_05021 +0.7 0.5 Response regulator compare
H281DRAFT_02903 +0.7 1.6 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_05097 +0.7 2.3 putative transposase compare
H281DRAFT_01668 +0.7 1.2 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_04170 +0.7 3.3 multidrug efflux pump compare
H281DRAFT_05233 +0.7 3.2 hypothetical protein compare
H281DRAFT_05852 +0.7 2.7 transcriptional regulator, TetR family compare
H281DRAFT_05121 +0.7 1.2 hypothetical protein compare
H281DRAFT_01554 +0.7 1.1 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06163 +0.7 0.8 hypothetical protein compare
H281DRAFT_01031 +0.7 1.6 peptide/nickel transport system ATP-binding protein compare
H281DRAFT_06373 +0.6 3.0 Protein of unknown function (DUF3005) compare
H281DRAFT_05218 +0.6 2.5 LTXXQ motif family protein compare
H281DRAFT_06197 +0.6 0.9 hypothetical protein compare
H281DRAFT_01836 +0.6 0.7 hypothetical protein compare
H281DRAFT_05724 +0.6 2.4 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_05122 +0.6 1.7 host factor-I protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Hexanoic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Hexanoic acid across organisms