Experiment set7IT049 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Valeric acid carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_01798 -5.4 -2.8 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_06068 -5.1 -5.5 phosphoribosylanthranilate isomerase compare
H281DRAFT_04710 -4.9 -5.0 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00116 -4.9 -1.5 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_04848 -4.8 -2.9 hypothetical protein compare
H281DRAFT_02205 -4.6 -1.9 transcriptional regulator, TraR/DksA family compare
H281DRAFT_04826 -4.4 -3.0 rhamnosyltransferase compare
H281DRAFT_06073 -4.2 -3.8 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_02864 -4.2 -4.7 precorrin-8X methylmutase compare
H281DRAFT_04831 -4.1 -2.8 hypothetical protein compare
H281DRAFT_00194 -4.1 -2.6 argininosuccinate lyase compare
H281DRAFT_05714 -4.1 -2.1 anthranilate synthase, component II compare
H281DRAFT_00120 -4.0 -4.1 sirohydrochlorin cobaltochelatase compare
H281DRAFT_04120 -3.9 -7.6 argininosuccinate synthase compare
H281DRAFT_04119 -3.7 -7.0 ornithine carbamoyltransferase compare
H281DRAFT_02004 -3.6 -5.6 phosphoglycerate mutase compare
H281DRAFT_02214 -3.6 -12.6 homoserine O-acetyltransferase compare
H281DRAFT_00860 -3.5 -1.8 phosphoserine phosphatase compare
H281DRAFT_02215 -3.5 -4.2 methionine biosynthesis protein MetW compare
H281DRAFT_00627 -3.4 -6.9 phosphoenolpyruvate synthase compare
H281DRAFT_05712 -3.4 -5.5 indole-3-glycerol phosphate synthase compare
H281DRAFT_00465 -3.3 -3.9 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_05715 -3.3 -12.8 anthranilate synthase, component I compare
H281DRAFT_06060 -3.3 -4.4 amidophosphoribosyltransferase compare
H281DRAFT_02065 -3.2 -3.0 rfaE bifunctional protein, domain II compare
H281DRAFT_04610 -3.1 -11.6 Fe-S oxidoreductase compare
H281DRAFT_04974 -3.0 -3.8 aromatic-amino-acid transaminase compare
H281DRAFT_04553 -3.0 -4.1 ketol-acid reductoisomerase compare
H281DRAFT_06059 -3.0 -7.9 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_06067 -2.9 -8.4 tryptophan synthase, beta chain compare
H281DRAFT_06072 -2.9 -5.4 3-isopropylmalate dehydrogenase compare
H281DRAFT_00909 -2.8 -3.2 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_05086 -2.8 -2.9 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_00197 -2.8 -7.2 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_06327 -2.7 -3.0 2-methylcitrate synthase compare
H281DRAFT_06315 -2.7 -2.3 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_06065 -2.7 -4.9 tryptophan synthase, alpha chain compare
H281DRAFT_05620 -2.5 -12.1 glutamate synthase (NADH) large subunit compare
H281DRAFT_05801 -2.5 -2.8 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_03926 -2.5 -6.0 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_02981 -2.4 -8.2 aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming) compare
H281DRAFT_02036 -2.4 -4.5 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_00115 -2.4 -2.8 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_04849 -2.4 -1.8 UDP-glucose 4-epimerase compare
H281DRAFT_05815 -2.4 -3.7 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_06075 -2.3 -7.0 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_00117 -2.3 -6.0 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_01413 -2.3 -1.6 hypothetical protein compare
H281DRAFT_04286 -2.3 -9.5 hypothetical protein compare
H281DRAFT_04388 -2.1 -0.9 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_00316 -2.1 -4.8 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_05713 -2.1 -3.3 anthranilate phosphoribosyltransferase compare
H281DRAFT_01927 -2.0 -11.8 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_03909 -2.0 -5.5 Acetoin utilization deacetylase AcuC compare
H281DRAFT_00118 -2.0 -4.9 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_01986 -2.0 -5.5 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_05087 -2.0 -3.1 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_05717 -2.0 -6.9 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_00145 -2.0 -5.0 adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase compare
H281DRAFT_01749 -2.0 -1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04495 -1.9 -4.7 3-oxoacid CoA-transferase subunit A compare
H281DRAFT_04055 -1.9 -5.9 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_02000 -1.9 -4.6 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_00291 -1.9 -3.4 Cytochrome c553 compare
H281DRAFT_02216 -1.9 -6.4 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG compare
H281DRAFT_06523 -1.8 -5.1 protoporphyrin IX magnesium-chelatase (EC 6.6.1.1) compare
H281DRAFT_06017 -1.8 -1.6 Exodeoxyribonuclease VII small subunit compare
H281DRAFT_06547 -1.8 -2.7 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_02235 -1.8 -3.7 multi-sensor signal transduction histidine kinase compare
H281DRAFT_04844 -1.8 -5.8 Glycosyltransferase, GT2 family compare
H281DRAFT_00139 -1.8 -4.5 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
H281DRAFT_03314 -1.8 -1.4 hypothetical protein compare
H281DRAFT_01067 -1.8 -1.4 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_06008 -1.8 -5.4 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00114 -1.8 -3.2 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_02892 -1.7 -3.1 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
H281DRAFT_00146 -1.7 -5.4 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
H281DRAFT_04337 -1.7 -2.2 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_04477 -1.7 -6.5 transcriptional regulator, LysR family compare
H281DRAFT_05621 -1.7 -1.6 glutamate synthase (NADH) small subunit compare
H281DRAFT_00140 -1.7 -4.0 cobalamin-5'-phosphate synthase compare
H281DRAFT_01039 -1.7 -1.8 probable biosynthetic protein, Pnap_2097 family compare
H281DRAFT_05667 -1.7 -5.6 serine protease DegQ compare
H281DRAFT_02955 -1.6 -1.7 NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family compare
H281DRAFT_05564 -1.6 -4.2 Aspartate/methionine/tyrosine aminotransferase compare
H281DRAFT_00843 -1.6 -1.2 lipoprotein NlpD compare
H281DRAFT_06328 -1.6 -5.0 transcriptional regulator, propionate catabolism operon regulatory protein compare
H281DRAFT_04172 -1.6 -1.3 transcriptional regulator, TetR family compare
H281DRAFT_01990 -1.6 -6.9 cytochrome c oxidase subunit 3 compare
H281DRAFT_00841 -1.6 -1.9 hypothetical protein compare
H281DRAFT_00143 -1.6 -3.0 L-threonine O-3-phosphate decarboxylase compare
H281DRAFT_04039 -1.6 -1.6 hypothetical protein compare
H281DRAFT_03418 -1.6 -2.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_06567 -1.6 -1.5 hypothetical protein compare
H281DRAFT_05565 -1.6 -2.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_02398 -1.6 -9.3 fatty-acyl-CoA synthase compare
H281DRAFT_06023 -1.5 -3.8 hypothetical protein compare
H281DRAFT_05743 -1.5 -3.1 CheW protein compare
H281DRAFT_05983 -1.5 -1.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06500 -1.5 -1.5 Lactate dehydrogenase compare
H281DRAFT_00315 -1.5 -2.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00529 -1.5 -2.7 KUP system potassium uptake protein compare
H281DRAFT_02860 -1.5 -4.6 cobalt-precorrin-5B (C1)-methyltransferase compare
H281DRAFT_04243 -1.5 -3.2 magnesium and cobalt transporter compare
H281DRAFT_03925 -1.5 -5.9 chorismate mutase compare
H281DRAFT_00886 -1.5 -2.9 two component transcriptional regulator, winged helix family compare
H281DRAFT_06277 -1.5 -2.1 hypothetical protein compare
H281DRAFT_02865 -1.5 -3.9 precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase compare
H281DRAFT_06264 -1.5 -1.9 glutamate 5-kinase compare
H281DRAFT_04082 -1.4 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_04549 -1.4 -3.0 Protein of unknown function (DUF3619) compare
H281DRAFT_01993 -1.4 -5.7 cytochrome c oxidase subunit 1 compare
H281DRAFT_06525 -1.4 -4.1 cobalamin biosynthesis protein CobW compare
H281DRAFT_02576 -1.4 -2.1 transcriptional regulator, IclR family compare
H281DRAFT_06529 -1.4 -4.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_00317 -1.4 -2.5 O-antigen ligase compare
H281DRAFT_04071 -1.4 -5.0 quinolinate synthetase compare
H281DRAFT_02866 -1.4 -4.4 precorrin-3 methyltransferase (EC 2.1.1.131) compare
H281DRAFT_05157 -1.4 -1.5 allantoin racemase compare
H281DRAFT_03384 -1.4 -1.4 Cytochrome c, mono- and diheme variants compare
H281DRAFT_06022 -1.4 -4.1 DNA polymerase I compare
H281DRAFT_05562 -1.4 -7.9 indolepyruvate ferredoxin oxidoreductase compare
H281DRAFT_01145 -1.4 -2.3 hopanoid biosynthesis associated protein HpnK compare
H281DRAFT_03147 -1.4 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_03069 -1.4 -1.1 Uncharacterized conserved protein compare
H281DRAFT_05041 -1.4 -1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01554 -1.4 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00896 -1.4 -2.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_02136 -1.4 -0.8 hypothetical protein compare
H281DRAFT_04162 -1.4 -3.1 zinc/manganese transport system substrate-binding protein compare
H281DRAFT_02982 -1.3 -2.1 2-methylaconitate cis-trans isomerase compare
H281DRAFT_02743 -1.3 -1.5 protein of unknown function (DUF4148) compare
H281DRAFT_00531 -1.3 -3.0 hypothetical protein compare
H281DRAFT_02201 -1.3 -1.9 hypothetical protein compare
H281DRAFT_06276 -1.3 -2.8 hypothetical protein compare
H281DRAFT_02505 -1.3 -1.6 hypothetical protein compare
H281DRAFT_00755 -1.3 -2.2 transcriptional regulator, TetR family compare
H281DRAFT_03429 -1.3 -1.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_02612 -1.3 -2.9 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase compare
H281DRAFT_04727 -1.3 -2.3 transcriptional repressor NrdR compare
H281DRAFT_01411 -1.2 -3.1 hypothetical protein compare
H281DRAFT_00658 -1.2 -1.5 transcriptional regulator, IclR family compare
H281DRAFT_02422 -1.2 -2.5 hypothetical protein compare
H281DRAFT_02863 -1.2 -2.7 precorrin-3B synthase compare
H281DRAFT_04984 -1.2 -2.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_05502 -1.2 -1.8 transketolase subunit B compare
H281DRAFT_06518 -1.2 -2.2 hypothetical protein compare
H281DRAFT_01914 -1.2 -3.1 Predicted PurR-regulated permease PerM compare
H281DRAFT_05469 -1.2 -2.5 transcriptional regulator, IclR family compare
H281DRAFT_01726 -1.2 -2.4 transcriptional regulator, TetR family compare
H281DRAFT_02905 -1.2 -1.4 L-lactate dehydrogenase complex protein LldE compare
H281DRAFT_04835 -1.2 -1.3 hypothetical protein compare
H281DRAFT_06530 -1.2 -2.2 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11) compare
H281DRAFT_01253 -1.2 -1.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04734 -1.2 -2.5 Uncharacterized membrane protein YqjE compare
H281DRAFT_04679 -1.2 -2.3 pyrroline-5-carboxylate reductase compare
H281DRAFT_00358 -1.2 -2.4 Aldo/keto reductase compare
H281DRAFT_03006 -1.1 -3.3 transcriptional regulator, GntR family compare
H281DRAFT_06102 -1.1 -1.5 peptide/nickel transport system permease protein compare
H281DRAFT_01985 -1.1 -4.0 protoheme IX farnesyltransferase compare
H281DRAFT_00603 -1.1 -2.0 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_06232 -1.1 -2.3 peptidoglycan synthetase FtsI compare
H281DRAFT_04707 -1.1 -2.9 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_05520 -1.1 -3.1 transcriptional regulator, TetR family compare
H281DRAFT_05298 -1.1 -1.1 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_00650 -1.1 -2.1 transcriptional regulator, DeoR family compare
H281DRAFT_06127 -1.1 -2.4 hypothetical protein compare
H281DRAFT_06471 -1.1 -1.8 sulfonate transport system substrate-binding protein compare
H281DRAFT_01139 -1.1 -1.7 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit compare
H281DRAFT_01086 -1.1 -1.6 hypothetical protein compare
H281DRAFT_03306 -1.1 -1.5 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01745 -1.1 -2.7 transcriptional regulator, LacI family compare
H281DRAFT_02102 -1.1 -2.5 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_03130 -1.1 -1.6 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_01053 -1.0 -1.2 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_00563 -1.0 -1.6 microcin C transport system ATP-binding protein compare
H281DRAFT_04225 -1.0 -2.5 transcriptional regulator, DeoR family compare
H281DRAFT_03152 -1.0 -1.3 hypothetical protein compare
H281DRAFT_01730 -1.0 -2.8 Predicted oxidoreductase compare
H281DRAFT_00748 -1.0 -0.9 Uncharacterized protein, UPF0303 family compare
H281DRAFT_03419 -1.0 -1.4 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_04781 -1.0 -1.1 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_00561 -1.0 -3.6 microcin C transport system permease protein compare
H281DRAFT_00672 -1.0 -3.1 hypothetical protein compare
H281DRAFT_04164 -1.0 -2.5 zinc/manganese transport system permease protein compare
H281DRAFT_04805 -1.0 -1.7 methyltransferase, FkbM family compare
H281DRAFT_00523 -1.0 -0.6 protease FtsH subunit HflK compare
H281DRAFT_00510 -1.0 -1.8 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_03151 -1.0 -1.6 hypothetical protein compare
H281DRAFT_00842 -1.0 -3.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_02751 -1.0 -2.6 carboxylesterase compare
H281DRAFT_03637 -1.0 -1.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03826 -1.0 -2.9 uronate dehydrogenase compare
H281DRAFT_03304 -1.0 -1.4 amidohydrolase, PncC family compare
H281DRAFT_01326 -1.0 -1.8 formylmethanofuran-tetrahydromethanopterin formyltransferase /formyltransferase/hydrolase complex subunit D compare
H281DRAFT_06521 -1.0 -1.1 magnesium chelatase subunit ChlD-like protein compare
H281DRAFT_06322 -1.0 -2.0 LPS-assembly lipoprotein compare
H281DRAFT_06524 -1.0 -4.6 cobaltochelatase CobN subunit compare
H281DRAFT_00113 -1.0 -2.4 transcriptional regulator, LysR family compare
H281DRAFT_00851 -0.9 -5.0 polyhydroxyalkanoate synthase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Valeric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Valeric acid across organisms