Experiment set7IT048 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium chromate 0.0000015625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -5.1 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3191 -4.4 -8.1 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_5527 -4.3 -2.9 Cold shock protein CspC compare
Pf6N2E2_3658 -4.0 -9.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4273 -3.9 -11.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3264 -3.6 -4.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5536 -3.5 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2021 -3.5 -10.8 Excinuclease ABC subunit C compare
Pf6N2E2_4825 -3.5 -8.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2074 -3.4 -3.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4002 -3.3 -9.7 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf6N2E2_2073 -3.3 -9.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4005 -3.2 -7.4 hypothetical protein compare
Pf6N2E2_4369 -3.1 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4003 -3.0 -8.2 Sulfate transport system permease protein CysW compare
Pf6N2E2_2700 -3.0 -9.6 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_3461 -3.0 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4187 -3.0 -5.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2129 -2.9 -6.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4579 -2.9 -3.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4612 -2.9 -7.1 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4172 -2.9 -5.7 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_5832 -2.8 -10.5 Sulfate and thiosulfate binding protein CysP compare
Pf6N2E2_2071 -2.8 -3.2 hypothetical protein compare
Pf6N2E2_4004 -2.7 -8.6 Sulfate transport system permease protein CysT compare
Pf6N2E2_4803 -2.7 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5406 -2.7 -3.9 FIG00958224: hypothetical protein compare
Pf6N2E2_4173 -2.6 -6.9 Methionine ABC transporter permease protein compare
Pf6N2E2_2325 -2.6 -6.5 Recombination protein RecR compare
Pf6N2E2_4611 -2.5 -5.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2506 -2.4 -15.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4352 -2.4 -3.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5160 -2.4 -2.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_302 -2.3 -6.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4416 -2.3 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_2072 -2.3 -3.4 hypothetical protein compare
Pf6N2E2_3261 -2.2 -5.0 hypothetical protein compare
Pf6N2E2_4888 -2.2 -14.8 Excinuclease ABC subunit A compare
Pf6N2E2_4162 -2.1 -3.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3661 -2.1 -5.9 hypothetical protein compare
Pf6N2E2_5727 -2.1 -4.6 FIG00955360: hypothetical protein compare
Pf6N2E2_3373 -2.0 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_52 -2.0 -10.6 Excinuclease ABC subunit B compare
Pf6N2E2_2508 -2.0 -5.1 hypothetical protein compare
Pf6N2E2_623 -2.0 -2.1 FIG00954674: hypothetical protein compare
Pf6N2E2_5428 -1.9 -5.6 DNA recombination and repair protein RecO compare
Pf6N2E2_3908 -1.9 -7.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3270 -1.9 -4.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4025 -1.9 -2.2 hypothetical protein compare
Pf6N2E2_4353 -1.9 -6.4 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2507 -1.9 -6.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4197 -1.9 -7.7 DNA recombination and repair protein RecF compare
Pf6N2E2_4908 -1.8 -8.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2218 -1.8 -4.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5257 -1.8 -8.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3919 -1.8 -7.0 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_2869 -1.8 -2.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_6140 -1.8 -1.5 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3920 -1.8 -11.2 Cystine ABC transporter, permease protein compare
Pf6N2E2_2870 -1.7 -3.8 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_3303 -1.7 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5258 -1.7 -6.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3060 -1.7 -3.9 Outer membrane protein H precursor compare
Pf6N2E2_3941 -1.7 -3.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2755 -1.7 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5156 -1.7 -3.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5001 -1.7 -2.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3134 -1.6 -1.6 hypothetical protein compare
Pf6N2E2_6058 -1.6 -5.6 FIG139976: hypothetical protein compare
Pf6N2E2_5252 -1.6 -2.6 FIG00956396: hypothetical protein compare
Pf6N2E2_144 -1.6 -12.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4160 -1.6 -1.6 Cytochrome c5 compare
Pf6N2E2_2473 -1.6 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_446 -1.6 -7.3 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_5155 -1.6 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3791 -1.5 -7.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2675 -1.5 -1.4 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2509 -1.5 -2.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_6057 -1.5 -2.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4171 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_5987 -1.4 -5.7 OmpA family protein compare
Pf6N2E2_1673 -1.4 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5219 -1.4 -5.5 FIG140336: TPR domain protein compare
Pf6N2E2_145 -1.4 -5.7 putative exported protein compare
Pf6N2E2_5430 -1.3 -7.0 Transglycosylase, Slt family compare
Pf6N2E2_1055 -1.3 -7.1 Transcriptional regulator MexT compare
Pf6N2E2_445 -1.3 -4.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3664 -1.3 -6.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4057 -1.3 -1.2 lipoprotein, putative compare
Pf6N2E2_2065 -1.2 -2.2 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5523 -1.2 -3.1 Small-conductance mechanosensitive channel compare
Pf6N2E2_5723 -1.2 -4.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5006 -1.2 -6.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3885 -1.2 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_624 -1.2 -4.0 hypothetical protein PA3071 compare
Pf6N2E2_2281 -1.2 -1.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3258 -1.2 -4.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3607 -1.2 -5.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5632 -1.2 -3.9 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4454 -1.2 -4.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5794 -1.1 -2.3 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5150 -1.1 -4.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4562 -1.1 -3.1 L-cystine uptake protein TcyP compare
Pf6N2E2_2510 -1.1 -2.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2942 -1.1 -7.0 ATP-dependent helicase DinG/Rad3 compare
Pf6N2E2_2121 -1.1 -2.8 hypothetical protein compare
Pf6N2E2_2973 -1.1 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3873 -1.1 -9.1 Outer membrane porin, OprD family compare
Pf6N2E2_4556 -1.1 -2.4 FIG00953078: hypothetical protein compare
Pf6N2E2_122 -1.1 -2.4 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_3792 -1.1 -4.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3370 -1.1 -6.9 DNA repair protein RecN compare
Pf6N2E2_825 -1.1 -6.5 Multidrug efflux membrane fusion protein MexE compare
Pf6N2E2_4206 -1.1 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2217 -1.1 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_824 -1.1 -8.2 Multidrug efflux transporter MexF compare
Pf6N2E2_2746 -1.1 -4.0 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_3839 -1.0 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_6081 -1.0 -2.8 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_4773 -1.0 -1.3 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3833 -1.0 -3.3 hypothetical protein compare
Pf6N2E2_5414 -1.0 -5.9 Nucleoid-associated protein compare
Pf6N2E2_3835 -1.0 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_1784 -1.0 -2.4 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2674 -1.0 -1.2 FIG00953856: hypothetical protein compare
Pf6N2E2_2070 -0.9 -5.1 Periplasmic sugar-binding domain protein compare
Pf6N2E2_3257 -0.9 -2.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1032 -0.9 -1.2 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3039 -0.9 -3.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_639 -0.9 -2.9 FIG01285020: hypothetical protein compare
Pf6N2E2_6001 -0.9 -5.3 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_2189 -0.9 -3.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3504 -0.9 -5.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3260 -0.9 -3.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_746 -0.9 -1.9 FIG00958097: hypothetical protein compare
Pf6N2E2_4708 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4498 -0.9 -6.8 Outer membrane porin, OprD family compare
Pf6N2E2_5242 -0.9 -1.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1317 -0.9 -2.8 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_1315 -0.8 -1.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_4317 -0.8 -2.7 FIG00964469: hypothetical protein compare
Pf6N2E2_3568 -0.8 -1.5 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_3834 -0.8 -3.2 Lipoprotein NlpD compare
Pf6N2E2_2143 -0.8 -3.0 Uncharacterized GST-like protein yncG compare
Pf6N2E2_2213 -0.8 -4.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4477 -0.8 -2.1 Z-ring-associated protein ZapA compare
Pf6N2E2_1259 -0.8 -3.8 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_2514 -0.8 -2.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5182 -0.8 -4.3 Paraquat-inducible protein A compare
Pf6N2E2_4205 -0.8 -1.9 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_453 -0.8 -2.4 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3100 -0.8 -2.4 FIG00953063: hypothetical protein compare
Pf6N2E2_5677 -0.8 -1.2 Carbon storage regulator compare
Pf6N2E2_2513 -0.8 -1.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3870 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_5272 -0.8 -3.2 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_1034 -0.8 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2388 -0.8 -2.5 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3074 -0.8 -1.5 FIG00960973: hypothetical protein compare
Pf6N2E2_28 -0.8 -2.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_6077 -0.8 -3.6 Cysteine desulfurase (EC 2.8.1.7) compare
Pf6N2E2_1972 -0.8 -1.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_2586 -0.7 -1.4 Hpt domain protein compare
Pf6N2E2_338 -0.7 -1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_402 -0.7 -2.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3567 -0.7 -2.7 FIG00963947: hypothetical protein compare
Pf6N2E2_4918 -0.7 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3573 -0.7 -1.9 HupE-UreJ family metal transporter compare
Pf6N2E2_2753 -0.7 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_75 -0.7 -1.9 Colicin V production protein compare
Pf6N2E2_2523 -0.7 -4.4 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Pf6N2E2_288 -0.7 -1.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4821 -0.7 -3.5 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf6N2E2_4804 -0.7 -2.7 ApaG protein compare
Pf6N2E2_3460 -0.7 -1.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5274 -0.7 -4.2 FolM Alternative dihydrofolate reductase 1 compare
Pf6N2E2_3349 -0.7 -1.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2274 -0.7 -2.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2827 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_5623 -0.7 -2.3 YciL protein compare
Pf6N2E2_291 -0.7 -2.9 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_1656 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_2474 -0.7 -3.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4423 -0.7 -1.8 FIG00953342: hypothetical protein compare
Pf6N2E2_2940 -0.7 -3.2 OmpA family protein compare
Pf6N2E2_4418 -0.7 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_282 -0.7 -1.4 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4307 -0.7 -2.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_953 -0.7 -1.8 FIG00958851: hypothetical protein compare
Pf6N2E2_447 -0.7 -2.4 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_6085 -0.7 -1.5 Aha1 domain superfamily compare
Pf6N2E2_3656 -0.7 -3.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_3122 -0.6 -0.8 Chemotaxis signal transduction protein compare
Pf6N2E2_2137 -0.6 -4.4 DNA polymerase II (EC 2.7.7.7) compare
Pf6N2E2_5171 -0.6 -5.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2088 -0.6 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4365 -0.6 -2.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_1699 -0.6 -1.9 FIG00955832: hypothetical protein compare
Pf6N2E2_620 -0.6 -3.5 BatD compare
Pf6N2E2_82 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

For 24 genes in this experiment

For stress Potassium chromate in Pseudomonas fluorescens FW300-N2E2

For stress Potassium chromate across organisms