Experiment set7IT048 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Potassium chromate 0.0000015625 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3667 +5.2 8.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2133 +4.7 31.0 Putative sulfate permease compare
Pf6N2E2_1056 +4.1 7.2 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2465 +3.8 27.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_563 +3.7 26.3 Serine transporter compare
Pf6N2E2_4007 +3.5 4.1 FIG00956018: hypothetical protein compare
Pf6N2E2_2447 +3.0 20.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5153 +2.3 16.5 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_4564 +1.9 13.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5175 +1.7 14.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4006 +1.7 3.6 Sulfate and thiosulfate binding protein CysP compare
Pf6N2E2_4071 +1.7 8.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2936 +1.6 12.5 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_3282 +1.6 3.6 FIG005080: Possible exported protein compare
Pf6N2E2_2127 +1.6 7.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2126 +1.5 6.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3612 +1.5 4.7 HflK protein compare
Pf6N2E2_2984 +1.4 6.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5989 +1.4 11.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3666 +1.4 6.1 InaA protein compare
Pf6N2E2_5764 +1.4 9.9 C4-dicarboxylate transporter/malic acid transport protein compare
Pf6N2E2_5111 +1.3 5.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3192 +1.3 1.5 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4008 +1.3 4.3 hypothetical protein compare
Pf6N2E2_5176 +1.2 7.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3611 +1.1 2.0 HflC protein compare
Pf6N2E2_2134 +1.1 5.1 putative lipoprotein compare
Pf6N2E2_4148 +1.1 8.0 Glutamate-aspartate carrier protein compare
Pf6N2E2_2822 +1.1 5.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_4391 +1.1 6.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_5988 +1.1 2.7 hypothetical protein compare
Pf6N2E2_77 +1.0 3.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5520 +1.0 5.5 Sensory box histidine kinase compare
Pf6N2E2_4764 +1.0 4.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3206 +1.0 1.4 hypothetical protein compare
Pf6N2E2_2384 +0.9 3.8 CmpX compare
Pf6N2E2_5207 +0.9 3.0 hypothetical protein compare
Pf6N2E2_5860 +0.9 6.9 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_5243 +0.9 2.3 hypothetical protein compare
Pf6N2E2_4797 +0.9 2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5671 +0.9 3.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5499 +0.9 1.6 hypothetical protein compare
Pf6N2E2_3541 +0.9 3.5 Putative multicopper oxidases compare
Pf6N2E2_3338 +0.9 2.1 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3782 +0.9 3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4763 +0.9 6.6 Biotin synthesis protein BioC compare
Pf6N2E2_5177 +0.9 5.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_525 +0.8 3.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3517 +0.8 4.3 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_4092 +0.8 3.2 FIG00954395: hypothetical protein compare
Pf6N2E2_3033 +0.8 1.8 hypothetical protein compare
Pf6N2E2_2605 +0.8 4.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4747 +0.8 2.3 Transmembrane sensor compare
Pf6N2E2_2080 +0.8 1.4 hypothetical protein compare
Pf6N2E2_2835 +0.8 1.5 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_2132 +0.8 3.0 FIG00956937: hypothetical protein compare
Pf6N2E2_5300 +0.8 6.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3480 +0.8 1.9 Transcriptional regulator, ArsR family compare
Pf6N2E2_4486 +0.8 3.3 Glycine cleavage system H protein compare
Pf6N2E2_2707 +0.8 3.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_4907 +0.8 6.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_4059 +0.8 1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_4631 +0.8 5.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5425 +0.8 1.0 hypothetical protein compare
Pf6N2E2_4759 +0.8 6.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4601 +0.8 1.9 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3328 +0.8 1.4 transcriptional regulator compare
Pf6N2E2_5321 +0.7 5.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_4684 +0.7 2.2 hypothetical protein compare
Pf6N2E2_4277 +0.7 6.0 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_3539 +0.7 2.7 FIG00955840: hypothetical protein compare
Pf6N2E2_4761 +0.7 4.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4762 +0.7 1.9 Biotin synthesis protein BioH compare
Pf6N2E2_5746 +0.7 2.6 Cobalamin synthase compare
Pf6N2E2_1981 +0.7 2.4 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3037 +0.7 5.4 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3009 +0.7 2.2 Phage tail tube protein compare
Pf6N2E2_3161 +0.7 3.1 hypothetical protein compare
Pf6N2E2_258 +0.7 2.4 Nicotinamidase family protein YcaC compare
Pf6N2E2_5318 +0.7 6.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2428 +0.7 1.9 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2195 +0.7 3.1 cI compare
Pf6N2E2_3095 +0.7 1.3 hypothetical protein compare
Pf6N2E2_5720 +0.7 4.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4570 +0.7 2.9 Cation/multidrug efflux pump compare
Pf6N2E2_1238 +0.7 2.5 hypothetical protein compare
Pf6N2E2_370 +0.7 2.0 Predicted enzyme of the cupin superfamily compare
Pf6N2E2_3252 +0.7 4.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4063 +0.7 2.5 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_1694 +0.6 1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2985 +0.6 2.3 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_2578 +0.6 1.6 Flagellar biosynthesis protein FliR compare
Pf6N2E2_1435 +0.6 2.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3786 +0.6 2.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_952 +0.6 2.4 putative exported protein compare
Pf6N2E2_5647 +0.6 3.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3029 +0.6 3.3 Holin compare
Pf6N2E2_529 +0.6 3.7 FIG00954439: hypothetical protein compare
Pf6N2E2_3713 +0.6 1.0 Acyl carrier protein compare
Pf6N2E2_5510 +0.6 1.7 FIG00955324: hypothetical protein compare
Pf6N2E2_5317 +0.6 5.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_309 +0.6 1.4 FIG00957702: hypothetical protein compare
Pf6N2E2_5961 +0.6 3.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1281 +0.6 1.7 ATPase involved in DNA repair compare
Pf6N2E2_1009 +0.6 1.6 Inositol transport system permease protein compare
Pf6N2E2_4683 +0.6 3.8 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf6N2E2_6029 +0.6 2.2 hypothetical protein compare
Pf6N2E2_1124 +0.6 1.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5240 +0.6 3.5 FIG00953775: hypothetical protein compare
Pf6N2E2_6038 +0.6 1.8 hypothetical protein compare
Pf6N2E2_3743 +0.6 2.2 General secretion pathway protein G compare
Pf6N2E2_2864 +0.6 1.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4362 +0.6 1.8 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5339 +0.6 3.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4597 +0.6 3.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_37 +0.6 2.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3151 +0.6 2.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_460 +0.6 1.5 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_5178 +0.6 1.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4546 +0.6 2.2 hypothetical protein compare
Pf6N2E2_4276 +0.6 2.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_71 +0.6 2.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_1116 +0.6 1.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3477 +0.6 1.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2391 +0.6 4.6 FIG137360: hypothetical protein compare
Pf6N2E2_2124 +0.6 1.4 Mg(2+) transport ATPase protein C compare
Pf6N2E2_4181 +0.6 1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_706 +0.6 3.2 Nitric oxide reductase activation protein NorQ compare
Pf6N2E2_2059 +0.5 1.1 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5237 +0.5 0.8 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_5170 +0.5 3.9 FIG00955330: hypothetical protein compare
Pf6N2E2_1111 +0.5 2.8 cell wall degradation protein compare
Pf6N2E2_2927 +0.5 1.3 Putative signal peptide protein compare
Pf6N2E2_1819 +0.5 2.1 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_1792 +0.5 1.9 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_1162 +0.5 1.2 Transmembrane amino acid efflux protein compare
Pf6N2E2_1649 +0.5 2.3 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) compare
Pf6N2E2_2714 +0.5 1.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1682 +0.5 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_4969 +0.5 1.0 hypothetical protein compare
Pf6N2E2_5320 +0.5 3.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2200 +0.5 1.0 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_2312 +0.5 1.3 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2225 +0.5 1.4 FIG00953489: hypothetical protein compare
Pf6N2E2_1294 +0.5 0.9 Carbon starvation protein A compare
Pf6N2E2_3542 +0.5 4.7 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_1536 +0.5 2.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_1548 +0.5 1.7 Lactoylglutathione lyase compare
Pf6N2E2_4476 +0.5 3.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_2157 +0.5 2.8 Transcriptional regulator compare
Pf6N2E2_3198 +0.5 1.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3384 +0.5 1.7 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_4159 +0.5 2.3 Cytochrome c4 compare
Pf6N2E2_63 +0.5 2.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3868 +0.5 3.2 Transcriptional regulator, LysR family compare
Pf6N2E2_963 +0.5 1.9 probable exported protein STY4558 compare
Pf6N2E2_5679 +0.5 2.6 hypothetical protein compare
Pf6N2E2_595 +0.5 1.3 Arsenical resistance operon repressor compare
Pf6N2E2_361 +0.5 1.5 Peptide ABC transporter, permease protein compare
Pf6N2E2_748 +0.5 2.4 Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine compare
Pf6N2E2_1083 +0.5 1.4 hypothetical protein compare
Pf6N2E2_1218 +0.5 2.3 HemK family modification methylase PA2179 compare
Pf6N2E2_909 +0.5 2.2 VrlR-like protein compare
Pf6N2E2_2593 +0.5 2.6 Flagellar M-ring protein FliF compare
Pf6N2E2_5944 +0.5 2.5 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_464 +0.5 1.3 Sensory histidine kinase QseC compare
Pf6N2E2_6065 +0.5 1.3 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_3475 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3844 +0.5 1.7 hypothetical protein compare
Pf6N2E2_1642 +0.5 2.8 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor compare
Pf6N2E2_5824 +0.5 3.2 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf6N2E2_2552 +0.5 2.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4541 +0.5 0.9 hypothetical protein compare
Pf6N2E2_5337 +0.5 2.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4279 +0.5 3.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5945 +0.5 1.9 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_4896 +0.5 3.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_578 +0.5 2.0 Mobile element protein compare
Pf6N2E2_4635 +0.5 3.3 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_6045 +0.5 1.0 hypothetical protein compare
Pf6N2E2_3326 +0.5 0.4 hypothetical protein compare
Pf6N2E2_1269 +0.5 2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2436 +0.5 2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_537 +0.5 2.6 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_2580 +0.5 1.5 Flagellar biosynthesis protein FliP compare
Pf6N2E2_1325 +0.5 1.2 FIG00954773: hypothetical protein compare
Pf6N2E2_5739 +0.5 1.1 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1152 +0.5 1.2 hypothetical protein compare
Pf6N2E2_955 +0.5 1.7 FIG00953508: hypothetical protein compare
Pf6N2E2_5545 +0.5 1.8 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2400 +0.5 1.2 Thiol:disulfide interchange protein DsbG precursor compare
Pf6N2E2_264 +0.5 2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1857 +0.5 1.8 hypothetical protein compare
Pf6N2E2_3778 +0.5 1.8 FIG00954300: hypothetical protein compare
Pf6N2E2_1711 +0.5 2.5 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) compare
Pf6N2E2_1650 +0.5 2.9 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_961 +0.5 1.6 FIG00954712: hypothetical protein compare
Pf6N2E2_1305 +0.5 1.8 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_3017 +0.5 1.1 hypothetical protein compare
Pf6N2E2_3871 +0.5 3.7 FIG00553872: hypothetical protein compare


Specific Phenotypes

For 24 genes in this experiment

For stress Potassium chromate in Pseudomonas fluorescens FW300-N2E2

For stress Potassium chromate across organisms