Experiment set7IT048 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4503.1 -3.6 -7.7 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4481.1 -3.5 -7.3 hypothetical protein compare
Xcc-8004.4514.1 -3.4 -13.4 Glycosyltransferase compare
Xcc-8004.2386.1 -3.3 -13.6 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.2385.1 -3.3 -10.1 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.1241.1 -3.2 -6.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1491.1 -2.9 -13.7 Glycosyltransferase compare
Xcc-8004.4486.1 -2.8 -12.6 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4485.1 -2.8 -9.8 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.4473.1 -2.7 -13.9 FIG01212400: hypothetical protein compare
Xcc-8004.659.1 -2.6 -3.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.171.1 -2.3 -1.7 hypothetical protein compare
Xcc-8004.401.1 -2.3 -3.1 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.2217.1 -2.3 -3.8 FIG01209779: hypothetical protein compare
Xcc-8004.3742.1 -2.2 -3.0 Type III effector compare
Xcc-8004.4507.1 -2.2 -4.7 Glycosyltransferase compare
Xcc-8004.4737.1 -2.2 -5.9 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2406.1 -2.2 -8.8 Manganese transport protein MntH compare
Xcc-8004.2199.1 -2.1 -3.1 Hemerythrin-like protein PA1673 compare
Xcc-8004.1137.1 -2.0 -1.4 FIG006231: RNA-binding protein compare
Xcc-8004.4039.1 -2.0 -3.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1696.1 -1.9 -2.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4025.1 -1.9 -9.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.1436.1 -1.9 -2.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.1236.1 -1.8 -4.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4480.1 -1.8 -9.7 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.4112.1 -1.8 -3.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4620.1 -1.8 -6.5 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4738.1 -1.8 -8.7 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.3721.1 -1.6 -2.2 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.2337.1 -1.6 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3479.1 -1.6 -1.5 aklaviketone reductase compare
Xcc-8004.4026.1 -1.6 -6.0 FIG01209666: hypothetical protein compare
Xcc-8004.1727.1 -1.5 -1.8 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2569.1 -1.5 -2.0 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.2011.1 -1.5 -1.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.574.1 -1.4 -5.8 Di-/tripeptide transporter compare
Xcc-8004.1437.1 -1.4 -4.3 Kup system potassium uptake protein compare
Xcc-8004.3728.1 -1.4 -1.6 hypothetical protein compare
Xcc-8004.500.1 -1.3 -1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.4231.1 -1.3 -1.4 two-component system regulatory protein compare
Xcc-8004.2168.1 -1.3 -3.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.1615.1 -1.3 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.797.1 -1.3 -1.0 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.4945.1 -1.2 -1.0 FIG01210349: hypothetical protein compare
Xcc-8004.1838.1 -1.2 -1.2 FIG002958: hypothetical protein compare
Xcc-8004.5333.1 -1.2 -2.8 Transposase (class I) compare
Xcc-8004.4506.1 -1.2 -5.5 membrane protein WxcD compare
Xcc-8004.3119.1 -1.2 -3.6 GTP-binding protein HflX compare
Xcc-8004.3855.1 -1.2 -5.4 FIG01209965: hypothetical protein compare
Xcc-8004.2357.1 -1.2 -2.7 Segregation and condensation protein B compare
Xcc-8004.689.1 -1.2 -1.2 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4510.1 -1.2 -0.9 ATP binding component of ABC-transporter compare
Xcc-8004.623.1 -1.2 -1.6 Phosphoserine phosphatase compare
Xcc-8004.1660.1 -1.2 -1.0 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.5125.1 -1.1 -3.0 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.1676.1 -1.1 -6.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.1677.1 -1.1 -3.1 FIG01209993: hypothetical protein compare
Xcc-8004.4457.1 -1.1 -2.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4820.1 -1.1 -1.1 FIG01211334: hypothetical protein compare
Xcc-8004.950.1 -1.1 -1.1 General secretion pathway protein L compare
Xcc-8004.3321.1 -1.1 -1.9 FIG01209847: hypothetical protein compare
Xcc-8004.5324.1 -1.1 -2.2 Mobile element protein compare
Xcc-8004.3433.1 -1.1 -4.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2652.1 -1.1 -1.9 response regulator compare
Xcc-8004.1562.1 -1.1 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.4529.1 -1.1 -1.5 FIG01210979: hypothetical protein compare
Xcc-8004.983.1 -1.1 -2.0 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.4430.1 -1.0 -1.8 General secretion pathway protein G compare
Xcc-8004.2343.1 -1.0 -1.5 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1809.1 -1.0 -1.7 extracellular serine protease compare
Xcc-8004.1871.1 -1.0 -2.5 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.5114.1 -1.0 -4.1 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3346.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.1567.1 -1.0 -3.9 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.601.1 -1.0 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.2387.1 -1.0 -1.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.3310.1 -1.0 -2.8 Chromosome partition protein smc compare
Xcc-8004.3898.1 -1.0 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.5133.1 -1.0 -1.1 FIG01212313: hypothetical protein compare
Xcc-8004.4669.1 -1.0 -6.0 Transcriptional regulator NtrC family compare
Xcc-8004.1164.1 -1.0 -2.0 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2699.1 -1.0 -5.5 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4322.1 -1.0 -1.5 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.777.1 -1.0 -3.2 FIG01211805: hypothetical protein compare
Xcc-8004.3595.1 -1.0 -1.2 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.3726.1 -1.0 -1.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.127.1 -1.0 -1.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.251.1 -0.9 -2.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.3803.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.323.1 -0.9 -1.2 FIG01210738: hypothetical protein compare
Xcc-8004.1118.1 -0.9 -1.1 hypothetical protein compare
Xcc-8004.4439.1 -0.9 -5.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.3445.1 -0.9 -2.2 hypothetical protein compare
Xcc-8004.4251.1 -0.9 -2.3 hypothetical protein compare
Xcc-8004.1763.1 -0.9 -1.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1486.1 -0.9 -2.3 Coenzyme PQQ synthesis protein D compare
Xcc-8004.5087.1 -0.9 -1.6 FIG027190: Putative transmembrane protein compare
Xcc-8004.2879.1 -0.9 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4824.1 -0.9 -4.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3903.1 -0.9 -1.7 Mlr6856 protein compare
Xcc-8004.4508.1 -0.9 -3.0 Kinase compare
Xcc-8004.4948.1 -0.9 -1.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4694.1 -0.9 -2.1 FIG01210824: hypothetical protein compare
Xcc-8004.178.1 -0.9 -0.8 hypothetical protein compare
Xcc-8004.585.1 -0.9 -1.5 Na(+) H(+) antiporter subunit F compare
Xcc-8004.2989.1 -0.9 -2.5 hypothetical protein compare
Xcc-8004.130.1 -0.8 -3.5 hypothetical protein compare
Xcc-8004.2861.1 -0.8 -1.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.726.1 -0.8 -0.8 Putative preQ0 transporter compare
Xcc-8004.3228.1 -0.8 -3.0 hypothetical protein compare
Xcc-8004.3655.1 -0.8 -1.3 FIG01210025: hypothetical protein compare
Xcc-8004.1511.1 -0.8 -2.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.459.1 -0.8 -2.1 4-hydroxybenzoate transporter compare
Xcc-8004.4806.1 -0.8 -1.5 FIG01211609: hypothetical protein compare
Xcc-8004.4105.1 -0.8 -2.1 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.4275.1 -0.8 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.4170.1 -0.8 -1.2 LSU ribosomal protein L25p compare
Xcc-8004.4241.1 -0.8 -1.2 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.1848.1 -0.8 -1.2 Ribonuclease E inhibitor RraA compare
Xcc-8004.3426.1 -0.8 -3.2 Chaperone protein DnaJ compare
Xcc-8004.645.1 -0.8 -1.1 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.3389.1 -0.8 -3.0 Nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.3674.1 -0.8 -1.5 FIG01209931: hypothetical protein compare
Xcc-8004.1768.1 -0.8 -1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.93.1 -0.8 -1.9 FIG01211857: hypothetical protein compare
Xcc-8004.610.1 -0.8 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4956.1 -0.8 -2.1 Cytochrome B561 compare
Xcc-8004.2288.1 -0.8 -1.9 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Xcc-8004.1196.1 -0.8 -3.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.3324.1 -0.8 -2.2 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2497.1 -0.8 -0.7 Mobile element protein compare
Xcc-8004.3831.1 -0.8 -2.7 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
Xcc-8004.1003.1 -0.7 -0.9 FIG027190: Putative transmembrane protein compare
Xcc-8004.2672.1 -0.7 -0.9 hypothetical protein compare
Xcc-8004.4697.1 -0.7 -1.3 FIG01210654: hypothetical protein compare
Xcc-8004.3451.1 -0.7 -1.4 hypothetical protein compare
Xcc-8004.1839.1 -0.7 -1.1 FIG01210863: hypothetical protein compare
Xcc-8004.5252.1 -0.7 -2.9 FIG01210658: hypothetical protein compare
Xcc-8004.3881.1 -0.7 -1.9 hypothetical protein compare
Xcc-8004.3211.1 -0.7 -1.7 protein of unknown function DUF88 compare
Xcc-8004.2012.1 -0.7 -3.2 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.4596.1 -0.7 -3.8 hypothetical protein compare
Xcc-8004.5203.1 -0.7 -0.9 Twin-arginine translocation protein TatB compare
Xcc-8004.4517.1 -0.7 -4.1 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.3703.1 -0.7 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2358.1 -0.7 -3.2 Segregation and condensation protein A compare
Xcc-8004.776.1 -0.7 -1.8 Fatty acid desaturase compare
Xcc-8004.337.1 -0.7 -1.6 ATPase, AFG1 family compare
Xcc-8004.4431.1 -0.7 -2.5 General secretion pathway protein F compare
Xcc-8004.4810.1 -0.7 -3.9 hypothetical protein compare
Xcc-8004.3208.1 -0.7 -0.7 Methyltransferase type 12 compare
Xcc-8004.1427.1 -0.7 -2.0 Type I antifreeze protein compare
Xcc-8004.1599.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3049.1 -0.7 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2565.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3108.1 -0.6 -1.5 Regulatory protein RecX compare
Xcc-8004.2961.1 -0.6 -1.0 PROBABLE HEMAGGLUTININ-RELATED PROTEIN compare
Xcc-8004.1790.1 -0.6 -1.7 Zinc uptake regulation protein ZUR compare
Xcc-8004.3723.1 -0.6 -1.1 hypothetical protein compare
Xcc-8004.177.1 -0.6 -1.9 RhsD protein compare
Xcc-8004.4250.1 -0.6 -1.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.4073.1 -0.6 -3.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1771.1 -0.6 -1.7 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.4499.1 -0.6 -1.8 Mobile element protein compare
Xcc-8004.3212.1 -0.6 -2.0 phage-related integrase compare
Xcc-8004.2384.1 -0.6 -4.0 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.1166.1 -0.6 -2.7 FIG01210744: hypothetical protein compare
Xcc-8004.3322.1 -0.6 -0.9 FIG01211446: hypothetical protein compare
Xcc-8004.2958.1 -0.6 -1.1 tryptophan-rich sensory protein compare
Xcc-8004.4102.1 -0.6 -0.9 FIG01211949: hypothetical protein compare
Xcc-8004.4013.1 -0.6 -1.0 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.1090.1 -0.6 -2.7 hypothetical protein compare
Xcc-8004.5280.1 -0.6 -1.3 hypothetical protein compare
Xcc-8004.5244.1 -0.6 -2.4 FIG01209927: hypothetical protein compare
Xcc-8004.965.1 -0.6 -2.0 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Xcc-8004.2700.1 -0.6 -3.1 hypothetical protein compare
Xcc-8004.4836.1 -0.6 -2.5 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.3339.1 -0.6 -2.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.5167.1 -0.6 -1.4 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.3787.1 -0.6 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4001.1 -0.6 -1.1 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.986.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.3017.1 -0.6 -2.0 hypothetical protein compare
Xcc-8004.1169.1 -0.6 -1.9 ErfK/YbiS/YcfS/YnhG family protein compare
Xcc-8004.461.1 -0.6 -1.4 Transcriptional regulator, MarR family compare
Xcc-8004.3616.1 -0.6 -2.4 FIG01209707: hypothetical protein compare
Xcc-8004.234.1 -0.6 -3.4 cardiolipin synthase compare
Xcc-8004.703.1 -0.6 -0.7 hypothetical protein compare
Xcc-8004.3036.1 -0.6 -1.1 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.2653.1 -0.6 -1.1 hypothetical protein compare
Xcc-8004.1316.1 -0.5 -1.2 hypothetical protein compare
Xcc-8004.1551.1 -0.5 -1.6 hypothetical protein compare
Xcc-8004.564.1 -0.5 -0.9 Mobile element protein compare
Xcc-8004.3632.1 -0.5 -1.4 FIG01209689: hypothetical protein compare
Xcc-8004.1295.1 -0.5 -1.9 Transcriptional regulator, LysR family compare
Xcc-8004.3817.1 -0.5 -2.3 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.3054.1 -0.5 -0.5 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2946.1 -0.5 -1.6 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.3360.1 -0.5 -2.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms