Experiment set7IT047 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with bismuth(III) chloride 0.000025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.0 -5.9 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -3.7 -5.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4743 -2.6 -1.9 hypothetical protein compare
Pf6N2E2_3303 -2.6 -6.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5527 -2.5 -2.9 Cold shock protein CspC compare
Pf6N2E2_4908 -2.4 -7.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2313 -2.3 -4.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5536 -2.3 -2.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3351 -2.0 -5.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4162 -2.0 -3.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4352 -1.9 -3.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4996 -1.9 -3.5 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_5727 -1.9 -7.0 FIG00955360: hypothetical protein compare
Pf6N2E2_4579 -1.9 -2.9 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2473 -1.9 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_5316 -1.8 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4204 -1.8 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2127 -1.8 -5.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3460 -1.7 -2.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4153 -1.7 -1.5 Sensory box histidine kinase compare
Pf6N2E2_1774 -1.6 -2.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_3908 -1.6 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3658 -1.5 -7.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_623 -1.5 -1.8 FIG00954674: hypothetical protein compare
Pf6N2E2_4416 -1.5 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_2487 -1.5 -1.3 FIG00956090: hypothetical protein compare
Pf6N2E2_3661 -1.5 -4.2 hypothetical protein compare
Pf6N2E2_5155 -1.5 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4638 -1.4 -3.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2753 -1.4 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_5761 -1.3 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4678 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_3607 -1.3 -5.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1596 -1.3 -2.3 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1545 -1.3 -3.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5632 -1.3 -2.9 Aromatic amino acid transport protein AroP compare
Pf6N2E2_1099 -1.2 -2.2 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_3461 -1.2 -1.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5766 -1.2 -1.5 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3847 -1.2 -2.7 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_4372 -1.2 -4.2 FIG00460773: hypothetical protein compare
Pf6N2E2_3875 -1.2 -1.9 FIG00953324: hypothetical protein compare
Pf6N2E2_178 -1.2 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2219 -1.1 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2217 -1.1 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2010 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_384 -1.1 -1.6 Glycine cleavage system transcriptional activator compare
Pf6N2E2_3060 -1.1 -2.9 Outer membrane protein H precursor compare
Pf6N2E2_2518 -1.1 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2320 -1.0 -2.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2527 -1.0 -3.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_746 -1.0 -2.0 FIG00958097: hypothetical protein compare
Pf6N2E2_4187 -1.0 -3.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3258 -1.0 -3.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2386 -1.0 -2.4 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_5430 -1.0 -5.4 Transglycosylase, Slt family compare
Pf6N2E2_2755 -1.0 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_58 -1.0 -2.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_3261 -1.0 -3.1 hypothetical protein compare
Pf6N2E2_5103 -1.0 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2071 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_288 -1.0 -1.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2126 -1.0 -3.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2984 -0.9 -2.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4803 -0.9 -1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2074 -0.9 -1.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2586 -0.9 -1.6 Hpt domain protein compare
Pf6N2E2_405 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_4075 -0.9 -2.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2311 -0.9 -3.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1699 -0.9 -2.1 FIG00955832: hypothetical protein compare
Pf6N2E2_2940 -0.9 -3.6 OmpA family protein compare
Pf6N2E2_5406 -0.9 -1.7 FIG00958224: hypothetical protein compare
Pf6N2E2_1147 -0.9 -2.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_3373 -0.8 -2.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5830 -0.8 -2.4 FIG00960829: hypothetical protein compare
Pf6N2E2_460 -0.8 -2.1 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_55 -0.8 -2.0 Probable hydrolase compare
Pf6N2E2_5428 -0.8 -3.5 DNA recombination and repair protein RecO compare
Pf6N2E2_238 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_1024 -0.8 -2.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_1920 -0.8 -2.4 Rubredoxin compare
Pf6N2E2_4417 -0.8 -2.3 Protein of unknown function DUF484 compare
Pf6N2E2_1081 -0.8 -1.6 probable membrane protein YPO3302 compare
Pf6N2E2_1972 -0.8 -1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_43 -0.8 -3.2 Histidine permease YuiF compare
Pf6N2E2_5312 -0.8 -1.4 FIG00964214: hypothetical protein compare
Pf6N2E2_4454 -0.8 -3.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5342 -0.8 -2.2 21 kDa hemolysin precursor compare
Pf6N2E2_3260 -0.8 -3.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4886 -0.8 -4.9 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2340 -0.8 -3.1 Transcriptional regulator, GntR family compare
Pf6N2E2_5972 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_4072 -0.8 -2.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5069 -0.8 -2.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_42 -0.8 -2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2318 -0.8 -4.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2508 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_1352 -0.8 -1.5 Cation transport ATPase compare
Pf6N2E2_4273 -0.8 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_919 -0.8 -1.5 FIG00954373: hypothetical protein compare
Pf6N2E2_3810 -0.8 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4684 -0.8 -2.7 hypothetical protein compare
Pf6N2E2_2397 -0.8 -2.2 Two-component system response regulator QseB compare
Pf6N2E2_3190 -0.8 -2.3 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_3841 -0.7 -3.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_234 -0.7 -1.7 FIG00454312: hypothetical protein compare
Pf6N2E2_5178 -0.7 -1.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3587 -0.7 -2.7 Azurin compare
Pf6N2E2_4381 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_5840 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_2390 -0.7 -1.5 FIG00959101: hypothetical protein compare
Pf6N2E2_2881 -0.7 -2.4 Putative cytoplasmic protein compare
Pf6N2E2_2381 -0.7 -2.5 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4673 -0.7 -1.7 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_4969 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_5068 -0.7 -4.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2827 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_2064 -0.7 -2.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5156 -0.7 -1.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4918 -0.7 -0.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_28 -0.7 -1.5 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_831 -0.7 -2.0 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_804 -0.7 -3.4 Fructokinase (EC 2.7.1.4) compare
Pf6N2E2_1490 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_1917 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_4050 -0.7 -1.3 FIG00953718: hypothetical protein compare
Pf6N2E2_4661 -0.7 -2.2 KluA regulatory protein compare
Pf6N2E2_114 -0.7 -1.8 Polysaccharide biosynthesis protein compare
Pf6N2E2_718 -0.7 -2.4 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_1652 -0.7 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4418 -0.7 -0.9 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5869 -0.7 -1.8 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_62 -0.7 -2.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3062 -0.7 -2.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5928 -0.7 -4.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2941 -0.7 -3.4 Esterase A compare
Pf6N2E2_2188 -0.7 -2.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_1124 -0.7 -0.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1987 -0.7 -0.6 hypothetical protein compare
Pf6N2E2_5338 -0.7 -3.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2073 -0.7 -3.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3839 -0.7 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3872 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_3876 -0.7 -2.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4197 -0.7 -3.6 DNA recombination and repair protein RecF compare
Pf6N2E2_988 -0.7 -1.6 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_4612 -0.7 -2.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4276 -0.6 -2.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3610 -0.6 -2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4531 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_1754 -0.6 -1.9 FIG00731982: hypothetical protein compare
Pf6N2E2_1656 -0.6 -0.7 hypothetical protein compare
Pf6N2E2_2310 -0.6 -3.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_663 -0.6 -1.6 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_3778 -0.6 -2.0 FIG00954300: hypothetical protein compare
Pf6N2E2_5974 -0.6 -2.6 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_1522 -0.6 -2.1 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_2472 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_3785 -0.6 -2.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_4113 -0.6 -1.6 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_161 -0.6 -1.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_3533 -0.6 -1.9 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_2186 -0.6 -2.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_315 -0.6 -2.1 probable transmembrane protein compare
Pf6N2E2_5251 -0.6 -1.7 FIG00954698: hypothetical protein compare
Pf6N2E2_1691 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_2258 -0.6 -3.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3782 -0.6 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2325 -0.6 -2.5 Recombination protein RecR compare
Pf6N2E2_3534 -0.6 -1.3 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2110 -0.6 -2.2 LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase compare
Pf6N2E2_2630 -0.6 -2.5 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
Pf6N2E2_3516 -0.6 -1.2 Probable transmembrane protein compare
Pf6N2E2_6140 -0.6 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4159 -0.6 -2.2 Cytochrome c4 compare
Pf6N2E2_453 -0.6 -1.5 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2855 -0.6 -1.8 DGPFAETKE compare
Pf6N2E2_4448 -0.6 -2.0 probable P23 protein compare
Pf6N2E2_2424 -0.6 -1.9 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_1233 -0.6 -2.8 ABC-type protease exporter, ATP-binding component PrtD/AprD compare
Pf6N2E2_5633 -0.6 -4.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3656 -0.6 -2.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_4168 -0.6 -3.2 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_1896 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_2825 -0.6 -2.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5975 -0.6 -2.0 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) compare
Pf6N2E2_5320 -0.6 -3.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5579 -0.6 -3.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_5262 -0.6 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_4984 -0.6 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_6064 -0.6 -2.3 2-methylaconitate isomerase compare
Pf6N2E2_2139 -0.6 -1.4 Paraquat-inducible protein A compare
Pf6N2E2_339 -0.6 -1.2 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_241 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_40 -0.6 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_455 -0.6 -3.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1176 -0.6 -1.7 Mll2356 protein compare
Pf6N2E2_3835 -0.6 -1.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3635 -0.6 -1.7 FIG00953138: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress bismuth(III) chloride across organisms