Experiment set7IT047 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4503.1 -5.0 -6.8 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.2386.1 -3.6 -14.8 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.1241.1 -3.6 -6.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4514.1 -3.5 -14.9 Glycosyltransferase compare
Xcc-8004.623.1 -3.5 -2.4 Phosphoserine phosphatase compare
Xcc-8004.4473.1 -3.4 -17.3 FIG01212400: hypothetical protein compare
Xcc-8004.1491.1 -3.3 -15.7 Glycosyltransferase compare
Xcc-8004.4485.1 -3.3 -10.8 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.4486.1 -3.2 -13.5 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4481.1 -3.2 -7.6 hypothetical protein compare
Xcc-8004.4510.1 -3.1 -1.9 ATP binding component of ABC-transporter compare
Xcc-8004.2385.1 -3.1 -10.0 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.127.1 -2.9 -2.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2011.1 -2.7 -3.7 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4507.1 -2.5 -5.3 Glycosyltransferase compare
Xcc-8004.3310.1 -2.4 -4.6 Chromosome partition protein smc compare
Xcc-8004.4480.1 -2.4 -11.4 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.2217.1 -2.3 -4.1 FIG01209779: hypothetical protein compare
Xcc-8004.2406.1 -2.3 -10.9 Manganese transport protein MntH compare
Xcc-8004.4738.1 -2.3 -10.6 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.4026.1 -2.2 -7.8 FIG01209666: hypothetical protein compare
Xcc-8004.3346.1 -2.1 -3.4 hypothetical protein compare
Xcc-8004.4025.1 -2.1 -10.8 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.1436.1 -2.0 -2.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.4732.1 -2.0 -2.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1372.1 -1.7 -2.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4112.1 -1.7 -3.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1236.1 -1.7 -5.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.659.1 -1.6 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4039.1 -1.6 -2.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.601.1 -1.6 -6.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1437.1 -1.5 -5.0 Kup system potassium uptake protein compare
Xcc-8004.1961.1 -1.5 -1.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.1615.1 -1.5 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3612.1 -1.5 -1.9 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.2387.1 -1.5 -2.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.2337.1 -1.4 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4506.1 -1.4 -5.8 membrane protein WxcD compare
Xcc-8004.4620.1 -1.4 -5.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3322.1 -1.4 -1.3 FIG01211446: hypothetical protein compare
Xcc-8004.4737.1 -1.3 -4.2 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4635.1 -1.3 -2.2 hypothetical protein compare
Xcc-8004.1521.1 -1.3 -2.0 FIG01209895: hypothetical protein compare
Xcc-8004.574.1 -1.3 -5.6 Di-/tripeptide transporter compare
Xcc-8004.3742.1 -1.2 -1.8 Type III effector compare
Xcc-8004.4499.1 -1.2 -2.8 Mobile element protein compare
Xcc-8004.2711.1 -1.2 -2.3 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.4329.1 -1.2 -1.5 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.2346.1 -1.2 -1.9 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1871.1 -1.2 -3.9 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4439.1 -1.1 -7.5 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.4669.1 -1.1 -7.5 Transcriptional regulator NtrC family compare
Xcc-8004.5087.1 -1.1 -2.1 FIG027190: Putative transmembrane protein compare
Xcc-8004.5253.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.2282.1 -1.1 -1.9 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.740.1 -1.0 -2.4 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.3230.1 -1.0 -2.0 Phage DNA invertase compare
Xcc-8004.3954.1 -1.0 -2.8 HflC protein compare
Xcc-8004.2699.1 -1.0 -7.3 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.1504.1 -1.0 -1.9 type IV pili signal transduction protein PilI compare
Xcc-8004.884.1 -1.0 -4.6 Rod shape-determining protein MreD compare
Xcc-8004.3324.1 -1.0 -3.1 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3211.1 -1.0 -2.5 protein of unknown function DUF88 compare
Xcc-8004.1616.1 -1.0 -1.5 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.1676.1 -1.0 -4.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.5185.1 -1.0 -1.9 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.2074.1 -1.0 -3.4 Transcriptional regulator, MerR family compare
Xcc-8004.3120.1 -1.0 -1.4 RNA-binding protein Hfq compare
Xcc-8004.4001.1 -0.9 -1.7 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.3655.1 -0.9 -1.6 FIG01210025: hypothetical protein compare
Xcc-8004.271.1 -0.9 -2.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1677.1 -0.9 -2.7 FIG01209993: hypothetical protein compare
Xcc-8004.5114.1 -0.9 -3.9 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4000.1 -0.9 -1.4 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.3831.1 -0.9 -2.8 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
Xcc-8004.2266.1 -0.9 -1.4 FIG01211351: hypothetical protein compare
Xcc-8004.93.1 -0.9 -1.8 FIG01211857: hypothetical protein compare
Xcc-8004.3320.1 -0.9 -1.4 FIG01209869: hypothetical protein compare
Xcc-8004.4529.1 -0.9 -1.6 FIG01210979: hypothetical protein compare
Xcc-8004.2012.1 -0.9 -4.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.270.1 -0.8 -3.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.5407.1 -0.8 -2.2 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.2168.1 -0.8 -2.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.2614.1 -0.8 -2.0 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2705.1 -0.8 -3.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.3375.1 -0.8 -2.5 hypothetical protein compare
Xcc-8004.703.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.3329.1 -0.8 -2.6 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.1809.1 -0.8 -1.8 extracellular serine protease compare
Xcc-8004.1222.1 -0.8 -1.8 Glyoxalase family protein compare
Xcc-8004.4824.1 -0.8 -4.4 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.5203.1 -0.8 -1.4 Twin-arginine translocation protein TatB compare
Xcc-8004.410.1 -0.8 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4948.1 -0.8 -1.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3108.1 -0.8 -1.6 Regulatory protein RecX compare
Xcc-8004.4810.1 -0.8 -4.1 hypothetical protein compare
Xcc-8004.1328.1 -0.8 -1.6 FIG01210090: hypothetical protein compare
Xcc-8004.5133.1 -0.7 -0.9 FIG01212313: hypothetical protein compare
Xcc-8004.3741.1 -0.7 -1.8 Type III effector HrpW, hairpin with pectate lyase domain compare
Xcc-8004.2277.1 -0.7 -2.8 FIG01211504: hypothetical protein compare
Xcc-8004.4508.1 -0.7 -2.2 Kinase compare
Xcc-8004.130.1 -0.7 -3.7 hypothetical protein compare
Xcc-8004.983.1 -0.7 -2.3 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.2497.1 -0.7 -0.8 Mobile element protein compare
Xcc-8004.2930.1 -0.7 -1.2 hypothetical protein compare
Xcc-8004.4633.1 -0.7 -1.6 FIG01210488: hypothetical protein compare
Xcc-8004.3054.1 -0.7 -0.7 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2653.1 -0.7 -2.6 hypothetical protein compare
Xcc-8004.488.1 -0.7 -4.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.4210.1 -0.7 -2.6 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.5317.1 -0.7 -1.5 FIG01210332: hypothetical protein compare
Xcc-8004.290.1 -0.7 -2.1 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.2533.1 -0.7 -2.2 Candidate type III effector Hop protein compare
Xcc-8004.4375.1 -0.7 -2.4 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.1727.1 -0.7 -1.2 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2700.1 -0.7 -4.4 hypothetical protein compare
Xcc-8004.4275.1 -0.7 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3321.1 -0.7 -1.6 FIG01209847: hypothetical protein compare
Xcc-8004.3433.1 -0.7 -3.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.4501.1 -0.7 -3.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.251.1 -0.7 -2.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.5252.1 -0.7 -3.0 FIG01210658: hypothetical protein compare
Xcc-8004.934.1 -0.7 -1.5 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.4073.1 -0.7 -4.0 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.5226.1 -0.7 -1.9 FIG01212167: hypothetical protein compare
Xcc-8004.183.1 -0.7 -2.8 FIG01211553: hypothetical protein compare
Xcc-8004.4429.1 -0.7 -2.4 General secretion pathway protein H compare
Xcc-8004.2117.1 -0.7 -1.8 FIG01209809: hypothetical protein compare
Xcc-8004.1380.1 -0.7 -0.8 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.5082.1 -0.7 -2.0 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.3676.1 -0.6 -1.3 Translation elongation factor LepA compare
Xcc-8004.4231.1 -0.6 -1.0 two-component system regulatory protein compare
Xcc-8004.4313.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.234.1 -0.6 -3.9 cardiolipin synthase compare
Xcc-8004.3955.1 -0.6 -2.2 HflK protein compare
Xcc-8004.5231.1 -0.6 -1.7 hypothetical protein compare
Xcc-8004.299.1 -0.6 -1.8 Acyltransferase compare
Xcc-8004.694.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.1622.1 -0.6 -2.3 Membrane protein with DUF350 domain compare
Xcc-8004.2922.1 -0.6 -0.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.5230.1 -0.6 -2.2 Gluconolactonase (EC 3.1.1.17) compare
Xcc-8004.2384.1 -0.6 -4.3 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.5343.1 -0.6 -2.6 hypothetical protein compare
Xcc-8004.4534.1 -0.6 -2.3 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.3903.1 -0.6 -1.4 Mlr6856 protein compare
Xcc-8004.1204.1 -0.6 -1.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.2633.1 -0.6 -2.9 Zona occludens toxin compare
Xcc-8004.4286.1 -0.6 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.3968.1 -0.6 -1.8 Mobile element protein compare
Xcc-8004.1811.1 -0.6 -1.0 extracellular serine protease compare
Xcc-8004.914.1 -0.6 -3.4 tail-specific protease compare
Xcc-8004.689.1 -0.6 -0.9 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.3855.1 -0.6 -2.9 FIG01209965: hypothetical protein compare
Xcc-8004.1242.1 -0.6 -2.9 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.3881.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.837.1 -0.6 -1.4 FIG01210690: hypothetical protein compare
Xcc-8004.3395.1 -0.6 -1.2 Transcriptional regulator, GntR family compare
Xcc-8004.4596.1 -0.6 -3.4 hypothetical protein compare
Xcc-8004.323.1 -0.6 -1.6 FIG01210738: hypothetical protein compare
Xcc-8004.353.1 -0.6 -1.8 FIG01210121: hypothetical protein compare
Xcc-8004.4945.1 -0.6 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.2920.1 -0.6 -3.2 Ferrous iron transport protein B compare
Xcc-8004.1621.1 -0.6 -2.6 FIG01213569: hypothetical protein compare
Xcc-8004.4381.1 -0.6 -2.0 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.3296.1 -0.6 -2.3 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.726.1 -0.6 -0.7 Putative preQ0 transporter compare
Xcc-8004.2415.1 -0.6 -3.8 FIG137360: hypothetical protein compare
Xcc-8004.657.1 -0.6 -2.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1086.1 -0.6 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2565.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.1244.1 -0.6 -3.0 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.4710.1 -0.6 -2.0 FIG01211889: hypothetical protein compare
Xcc-8004.713.1 -0.6 -0.7 FIG01210186: hypothetical protein compare
Xcc-8004.4578.1 -0.6 -2.8 FIG048548: ATP synthase protein I2 compare
Xcc-8004.2580.1 -0.6 -2.2 Mobile element protein compare
Xcc-8004.666.1 -0.5 -1.4 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein compare
Xcc-8004.3212.1 -0.5 -1.9 phage-related integrase compare
Xcc-8004.4221.1 -0.5 -2.3 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.117.1 -0.5 -1.6 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.645.1 -0.5 -1.0 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4984.1 -0.5 -1.7 hypothetical protein compare
Xcc-8004.4457.1 -0.5 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.376.1 -0.5 -2.3 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) compare
Xcc-8004.3454.1 -0.5 -2.2 Phage-related integrase compare
Xcc-8004.3905.1 -0.5 -2.2 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
Xcc-8004.5368.1 -0.5 -1.3 FIG01210868: hypothetical protein compare
Xcc-8004.3049.1 -0.5 -2.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1511.1 -0.5 -1.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3580.1 -0.5 -1.7 Transcriptional regulator, PadR family compare
Xcc-8004.990.1 -0.5 -1.0 FIG01210796: hypothetical protein compare
Xcc-8004.2652.1 -0.5 -1.2 response regulator compare
Xcc-8004.4465.1 -0.5 -2.2 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.2569.1 -0.5 -0.8 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.4853.1 -0.5 -1.4 hypothetical protein compare
Xcc-8004.4373.1 -0.5 -1.3 LppC putative lipoprotein compare
Xcc-8004.1465.1 -0.5 -1.9 Transporter, LysE family compare
Xcc-8004.5280.1 -0.5 -1.2 hypothetical protein compare
Xcc-8004.4739.1 -0.5 -1.5 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.4250.1 -0.5 -1.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.1466.1 -0.5 -1.1 Histone acetyltransferase HPA2 and related acetyltransferases compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms