Experiment set7IT047 for Caulobacter crescentus NA1000

Compare to:

PYE_noCalcium 4C survival rep1 58 days

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03998 +3.3 20.5 GT1/WbuB-like N-acetyl-L-fucosamine transferase compare
CCNA_00051 +3.0 18.7 magnesium and cobalt efflux protein CorC compare
CCNA_00472 +2.9 15.9 GDP-mannose 4,6 dehydratase compare
CCNA_03281 +2.9 16.5 AsnC-family transcriptional regulator compare
CCNA_00164 +2.8 15.2 O-antigen polymerase compare
CCNA_00471 +2.8 17.0 GDP-L-fucose synthase compare
CCNA_00161 +2.6 8.7 hypothetical protein compare
CCNA_03112 +2.4 17.8 magnesium and cobalt efflux protein corB compare
CCNA_01024 +2.4 17.5 hypothetical protein compare
CCNA_02467 +2.3 10.6 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03612 +2.3 7.4 HTH XRE-family transcriptional regulator compare
CCNA_00163 +2.3 13.8 exopolysaccharide transport family protein compare
CCNA_00167 +2.2 10.3 metallophosphatase family protein compare
CCNA_02287 +2.2 10.8 TetR-family transcriptional regulator compare
CCNA_03858 +2.2 10.4 protein translocase subunit secB compare
CCNA_01784 +2.1 2.7 hypothetical protein compare
CCNA_00168 +2.1 12.8 polysaccharide export protein compare
CCNA_00162 +2.1 8.7 hypothetical protein compare
CCNA_01025 +2.1 12.4 hypothetical protein compare
CCNA_01722 +2.1 8.0 hypothetical protein compare
CCNA_01372 +1.9 6.8 lysine decarboxylase family compare
CCNA_02071 +1.9 2.1 protein translocase subunit YajC compare
CCNA_00485 +1.7 14.2 ribosomal large subunit pseudouridine synthase D compare
CCNA_00555 +1.7 7.3 nitrogen regulatory protein P-II compare
CCNA_02243 +1.6 13.9 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_03078 +1.6 1.1 Arc/MetJ-family transcriptional regulator compare
CCNA_00409 +1.6 1.5 hypothetical protein compare
CCNA_03129 +1.5 11.9 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00470 +1.5 7.6 O-antigen polymerase compare
CCNA_02474 +1.5 6.1 MarR-family transcriptional regulator compare
CCNA_02289 +1.5 6.1 MarR/EmrR family transcriptional regulator compare
CCNA_00369 +1.5 10.7 magnesium and cobalt efflux protein corC-like protein compare
CCNA_00756 +1.4 2.8 hypothetical protein compare
CCNA_02339 +1.4 10.6 methyltransferase compare
CCNA_03954 +1.4 1.8 hypothetical protein compare
CCNA_03062 +1.4 8.0 cell wall hydrolase family protein compare
CCNA_01252 +1.4 12.1 soluble lytic murein transglycosylase compare
CCNA_02756 +1.4 9.1 competence/damage-inducible protein CinA compare
CCNA_03163 +1.3 7.4 peptidyl-prolyl cis-trans isomerase compare
CCNA_02127 +1.3 10.6 oxacillin resistance-associated protein fmtC compare
CCNA_01968 +1.3 3.3 pentapeptide repeats containing protein compare
CCNA_01914 +1.3 8.6 16S rRNA m(2)G 1207 methyltransferase RsmC compare
CCNA_01059 +1.3 5.6 S-layer protein rsaA compare
CCNA_02947 +1.3 8.3 spsG-related polysaccharide biosynthesis protein compare
CCNA_01751 +1.2 3.4 aminodeoxychorismate lyase compare
CCNA_01526 +1.2 4.9 flagellar biosynthesis regulatory protein flaF compare
CCNA_03271 +1.2 8.9 methionine gamma-lyase compare
CCNA_01857 +1.2 6.7 AraC-family transcriptional regulator compare
CCNA_01181 +1.1 5.5 hypothetical protein compare
CCNA_02980 +1.1 7.2 tryptophan 2,3-dioxygenase compare
CCNA_03961 +1.1 3.8 hypothetical protein compare
CCNA_00807 +1.1 2.0 ribonuclease P protein component compare
CCNA_00693 +1.1 3.6 heat shock protein 15 compare
CCNA_01521 +1.1 6.5 hypothetical protein compare
CCNA_01813 +1.1 5.8 tRNA-dihydrouridine synthase compare
CCNA_03439 +1.1 1.7 hypothetical protein compare
CCNA_01393 +1.1 8.7 soluble lytic murein transglycosylase compare
CCNA_03863 +1.1 2.7 hypothetical protein compare
CCNA_01859 +1.1 5.7 TonB-dependent receptor compare
CCNA_00750 +1.1 6.3 FeaR-family transcriptional regulator compare
CCNA_00931 +1.1 7.2 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_01823 +1.1 1.4 hypothetical protein compare
CCNA_03951 +1.0 4.1 hypothetical protein compare
CCNA_02448 +1.0 6.0 hypothetical protein compare
CCNA_03773 +1.0 7.5 hypothetical protein compare
CCNA_01931 +1.0 5.4 TetR-family transcriptional regulator compare
CCNA_03728 +1.0 4.2 hypothetical protein compare
CCNA_01276 +1.0 2.9 cytochrome c5 compare
CCNA_02011 +1.0 5.6 methylmalonyl CoA epimerase compare
CCNA_03965 +1.0 2.5 hypothetical protein compare
CCNA_01918 +1.0 5.9 cyclic di-GMP effector protein PopA compare
CCNA_01858 +1.0 5.7 AraC-family transcriptional regulator compare
CCNA_01779 +1.0 3.5 hypothetical protein compare
CCNA_03975 +1.0 3.5 hypothetical protein compare
CCNA_00762 +1.0 3.3 hypothetical protein compare
CCNA_00895 +1.0 5.1 hypothetical protein compare
CCNA_02534 +1.0 1.1 hypothetical protein compare
CCNA_02156 +1.0 5.5 hypothetical protein compare
CCNA_01339 +1.0 4.2 ArsR-family transcriptional regulator compare
CCNA_00354 +1.0 4.2 NlpC/P60 CHAP domain amidase protein compare
CCNA_02908 +1.0 6.0 HAD superfamily hydrolase compare
CCNA_02036 +1.0 2.9 DNA-binding protein HU compare
CCNA_03108 +1.0 7.1 TonB-dependent outer membrane receptor compare
CCNA_01236 +1.0 1.9 general stress protein GsiB compare
CCNA_01573 +0.9 5.1 ArsR-family transcriptional regulator compare
CCNA_01164 +0.9 6.4 O-linked N-acetylglucosamine transferase compare
CCNA_02187 +0.9 3.9 adapter for ClpXP proteolysis of tmRNA-tagged proteins SspB compare
CCNA_03509 +0.9 6.5 zinc protease compare
CCNA_01531 +0.9 6.1 acetyltransferase compare
CCNA_02619 +0.9 6.8 stomatin/prohibitin-related protein compare
CCNA_03787 +0.9 1.4 heme exporter protein D CcmD compare
CCNA_00769 +0.9 5.1 TetR family transcriptional regulator compare
CCNA_03314 +0.9 2.9 ferredoxin-NADP reductase compare
CCNA_02854 +0.9 3.7 two-component response regulator compare
CCNA_01949 +0.9 4.1 bactofilin A BacA compare
CCNA_01561 +0.9 2.4 hypothetical protein compare
CCNA_01742 +0.9 3.3 hypothetical protein compare
CCNA_01860 +0.9 5.0 iron-regulated membrane protein compare
CCNA_03528 +0.9 6.3 RNA methyltransferase compare
CCNA_02004 +0.9 1.4 SOS-induced inhibitor of cell division SidA compare
CCNA_01679 +0.9 4.7 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01549 +0.9 5.6 sulfate adenylyltransferase subunit 1/adenylylsulfate kinase compare
CCNA_01505 +0.9 3.2 hypothetical protein compare
CCNA_01752 +0.9 3.7 YicC-family protein compare
CCNA_03929 +0.9 1.3 hypothetical protein compare
CCNA_02340 +0.9 4.3 methyltransferase compare
CCNA_02278 +0.9 4.3 hypothetical protein compare
CCNA_03643 +0.9 0.9 succinate dehydrogenase membrane anchor subunit compare
CCNA_03372 +0.9 3.5 bacterioferritin-associated ferredoxin compare
CCNA_01818 +0.9 3.6 D-alanine aminotransferase compare
CCNA_01716 +0.9 1.3 hypothetical protein compare
CCNA_03546 +0.9 4.1 rRNA large subunit methyltransferase compare
CCNA_02984 +0.9 3.6 hypothetical protein compare
CCNA_00360 +0.9 5.1 alpha/beta hydrolase superfamily protein compare
CCNA_00459 +0.9 5.4 Na+/H+ antiporter nhaA compare
CCNA_02722 +0.9 4.9 hypothetical protein compare
CCNA_01644 +0.8 4.3 chemotaxis motB protein compare
CCNA_02010 +0.8 1.3 hypothetical protein compare
CCNA_03107 +0.8 4.6 cytidine deaminase compare
CCNA_00443 +0.8 4.5 chemotaxis protein cheW compare
CCNA_01177 +0.8 3.9 sulfite reductase, beta subunit compare
CCNA_01186 +0.8 3.4 hypothetical protein compare
CCNA_03999 +0.8 4.8 cell surface polysaccharide synthesis protein, GtrA family compare
CCNA_03089 +0.8 4.2 hypothetical protein compare
CCNA_00448 +0.8 3.5 cheU protein compare
CCNA_00872 +0.8 1.8 glutaredoxin compare
CCNA_00153 +0.8 3.6 adenine nucleotide exchange factor GrpE compare
CCNA_01820 +0.8 5.1 GTP-binding protein hflX compare
CCNA_01266 +0.8 4.8 NTF2 superfamily protein compare
CCNA_00965 +0.8 4.2 DnaJ-family chaperone protein compare
CCNA_00947 +0.8 6.0 flagellar hook protein FlgE compare
CCNA_01778 +0.8 5.5 penicillin-binding protein compare
CCNA_02098 +0.8 5.7 molybdopterin-guanine dinucleotide biosynthesis protein A compare
CCNA_01840 +0.8 5.3 MerR-family transcriptional regulator compare
CCNA_01541 +0.8 5.0 LysR-family transcriptional regulator compare
CCNA_01035 +0.8 5.4 gamma-glutamyltranspeptidase compare
CCNA_02766 +0.8 1.7 hypothetical protein compare
CCNA_03105 +0.8 3.6 DnaJ domain protein compare
CCNA_02666 +0.8 3.4 chemotactic signal-response protein CheL compare
CCNA_02387 +0.8 5.8 glutathione reductase compare
CCNA_02961 +0.8 5.6 NeuB-family N-acetylneuraminate synthase compare
CCNA_01057 +0.8 5.2 hypothetical protein compare
CCNA_01527 +0.8 5.1 flagellin fljL compare
CCNA_00834 +0.8 4.4 flagellin FljM compare
CCNA_00898 +0.8 4.3 ribosomal large subunit pseudouridine synthase F compare
CCNA_01550 +0.8 4.4 sulfate adenylyltransferase subunit 2 compare
CCNA_02182 +0.8 4.4 phosphoserine phosphatase compare
CCNA_03989 +0.8 5.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01592 +0.8 3.0 SN-glycerol-3-phosphate transport ATP-binding protein compare
CCNA_00483 +0.8 4.2 Zn-dependent hydrolase, glyoxalase II family compare
CCNA_01653 +0.8 3.1 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03983 +0.8 0.5 HicA-related toxin-antitoxin protein compare
CCNA_00412 +0.8 4.3 CoA pyrophosphatase compare
CCNA_02949 +0.8 3.8 S-adenosylmethionine-dependent methyltransferase related protein compare
CCNA_02067 +0.8 4.8 conserved membrane spanning protein compare
CCNA_00860 +0.8 1.4 holdfast inhibitor protein HfiA compare
CCNA_02942 +0.8 1.6 nucleoside-diphosphate-sugar epimerase compare
CCNA_00122 +0.8 1.3 hypothetical protein compare
CCNA_01175 +0.8 4.1 uroporphyrin-III C-methyltransferase compare
CCNA_02860 +0.7 5.0 DnaJ-class molecular chaperone compare
CCNA_00165 +0.7 4.0 polyisoprenylphosphate hexose-1-phosphotransferase pssY compare
CCNA_02692 +0.7 4.0 YceI-like domain protein compare
CCNA_00925 +0.7 3.7 hypothetical protein compare
CCNA_03854 +0.7 3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
CCNA_01801 +0.7 3.1 hypothetical protein compare
CCNA_00944 +0.7 3.9 flagellar hook length determination protein compare
CCNA_00723 +0.7 2.1 glyoxalase family protein compare
CCNA_03555 +0.7 4.1 esterase lipase family protein compare
CCNA_02544 +0.7 1.8 hypothetical protein compare
CCNA_01956 +0.7 4.4 outer membrane protein compare
CCNA_00234 +0.7 5.4 WecE-family cell wall biogenesis enzyme compare
CCNA_03394 +0.7 4.1 GGDEF diguanylate cyclase DgcA compare
CCNA_01224 +0.7 1.1 O-antigen membrane transport protein compare
CCNA_02363 +0.7 3.6 hypothetical protein compare
CCNA_00441 +0.7 3.3 chemotaxis receiver domain protein cheYI compare
CCNA_00114 +0.7 4.9 MarR/EmrR-family transcriptional regulator compare
CCNA_02249 +0.7 2.4 conserved hypothetical cytosolic protein compare
CCNA_01756 +0.7 0.7 hypothetical protein compare
CCNA_00889 +0.7 2.7 lumazine-binding domain protein compare
CCNA_00967 +0.7 3.6 TetR-family transcriptional regulator compare
CCNA_02051 +0.7 4.6 imidazolonepropionase related amidohydrolase compare
CCNA_01335 +0.7 4.1 ABC-type multidrug transport system, ATPase component compare
CCNA_03499 +0.7 2.4 hypothetical protein compare
CCNA_01184 +0.7 3.4 MutT/nudix family hydrolase compare
CCNA_03808 +0.7 3.0 organic solvent resistance transport system Ttg2C protein compare
CCNA_02143 +0.7 3.8 flagellar basal-body rod protein flgG compare
CCNA_00282 +0.7 3.4 conserved cell surface protein compare
CCNA_02805 +0.7 2.9 hypothetical protein compare
CCNA_02334 +0.7 3.1 transcriptional regulator of stalk biogenesis staR compare
CCNA_02717 +0.7 3.8 maltose/maltodextrin transport ATP-binding protein malK compare
CCNA_03955 +0.7 0.8 hypothetical protein compare
CCNA_01684 +0.7 2.9 phenylalanine-4-hydroxylase compare
CCNA_03613 +0.7 3.7 3-hydroxybutyryl-CoA dehydratase compare
CCNA_01654 +0.7 3.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01492 +0.7 3.4 3-mercaptopyruvate sulfurtransferase compare
CCNA_01448 +0.7 4.2 fructose-1,6-bisphosphatase, class II compare
CCNA_01004 +0.7 2.3 flagellar basal-body rod protein FlgB compare
CCNA_01296 +0.7 5.1 stalk-specific protein X compare
CCNA_01827 +0.7 3.4 cobyric acid synthase CobQ compare
CCNA_00731 +0.7 5.1 DNA mismatch repair protein mutL compare


Specific Phenotypes

For 11 genes in this experiment