Experiment set7IT047 for Caulobacter crescentus NA1000

Compare to:

PYE_noCalcium 4C survival rep1 58 days

Group: survival
Media: PYE_noCalcium
Culturing: Caulo_ML2, tube, Aerobic, at 4 (C), shaken=25 rpm
By: Sneha on 8-Aug-18
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate

Specific Phenotypes

For 11 genes in this experiment

SEED Subsystems

Subsystem #Specific
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
CO2 uptake, carboxysome 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Heat shock dnaK gene cluster extended 1
N-heterocyclic aromatic compound degradation 1
Ribosome biogenesis bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
UTP and CTP dephosphorylation I 7 5 2
pyrimidine deoxyribonucleotides de novo biosynthesis IV 7 6 1
pyrimidine deoxyribonucleotides biosynthesis from CTP 8 6 1
pyrimidine deoxyribonucleotides de novo biosynthesis I 9 9 1
pyrimidine deoxyribonucleotides de novo biosynthesis III 9 8 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) 14 12 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 17 1