Experiment set7IT047 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05561 +2.8 19.6 transcriptional regulator, TetR family compare
H281DRAFT_05286 +1.4 2.7 transcriptional regulator, LysR family compare
H281DRAFT_05962 +1.3 2.0 RraA famliy compare
H281DRAFT_06190 +1.2 1.6 DNA-binding protein H-NS compare
H281DRAFT_00997 +1.1 1.9 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_03266 +1.1 1.6 Nicotinamidase-related amidase compare
H281DRAFT_03611 +1.1 1.9 hopanoid-associated phosphorylase compare
H281DRAFT_01108 +1.1 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02007 +1.1 9.2 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01509 +1.0 1.6 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_02008 +1.0 6.8 phosphocarrier protein compare
H281DRAFT_01632 +1.0 8.1 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01756 +1.0 3.1 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_04415 +1.0 1.5 phosphate uptake regulator, PhoU compare
H281DRAFT_04792 +0.9 2.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01351 +0.9 2.1 hypothetical protein compare
H281DRAFT_03184 +0.9 1.3 cation diffusion facilitator family transporter compare
H281DRAFT_04858 +0.9 1.3 hypothetical protein compare
H281DRAFT_06462 +0.9 2.0 hypothetical protein compare
H281DRAFT_00969 +0.9 2.2 Type IV pili methyl-accepting chemotaxis transducer N-term compare
H281DRAFT_04425 +0.9 1.6 hypothetical protein compare
H281DRAFT_02662 +0.9 1.6 Predicted xylanase/chitin deacetylase compare
H281DRAFT_01401 +0.9 2.5 Polyisoprenoid-binding protein YceI compare
H281DRAFT_04970 +0.8 1.0 high-affinity iron transporter compare
H281DRAFT_06056 +0.8 6.6 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00819 +0.8 1.2 competence protein ComEA compare
H281DRAFT_01889 +0.8 3.2 7-cyano-7-deazaguanine reductase compare
H281DRAFT_01042 +0.8 1.8 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_04008 +0.8 2.4 RNAse PH compare
H281DRAFT_01775 +0.8 2.7 Putative intracellular protease/amidase compare
H281DRAFT_02322 +0.8 2.9 hypothetical protein compare
H281DRAFT_01011 +0.8 2.2 Uncharacterized membrane protein YkgB compare
H281DRAFT_02556 +0.8 1.1 Outer membrane protein (porin) compare
H281DRAFT_00717 +0.8 1.3 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_04932 +0.8 2.7 MbtH protein compare
H281DRAFT_05512 +0.8 2.6 branched-chain amino acid transport system ATP-binding protein compare
H281DRAFT_02643 +0.8 1.4 hypothetical protein compare
H281DRAFT_01681 +0.8 2.3 Acyl dehydratase compare
H281DRAFT_05216 +0.8 1.1 Protein of unknown function (DUF3022) compare
H281DRAFT_01447 +0.8 1.9 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_04310 +0.8 3.0 hypothetical protein compare
H281DRAFT_00728 +0.8 2.1 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_06295 +0.8 2.8 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_03165 +0.8 1.3 Flagellar motor protein MotB compare
H281DRAFT_05218 +0.8 1.7 LTXXQ motif family protein compare
H281DRAFT_01033 +0.8 1.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00769 +0.8 1.1 hypothetical protein compare
H281DRAFT_02443 +0.8 1.4 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_05768 +0.8 2.2 flagellar L-ring protein precursor FlgH compare
H281DRAFT_00761 +0.8 2.5 molybdenum-pterin binding domain-containing protein compare
H281DRAFT_05484 +0.7 1.3 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_06500 +0.7 1.7 Lactate dehydrogenase compare
H281DRAFT_04855 +0.7 1.3 hypothetical protein compare
H281DRAFT_00255 +0.7 1.4 hypothetical protein compare
H281DRAFT_01749 +0.7 1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05984 +0.7 1.9 conserved hypothetical protein compare
H281DRAFT_06266 +0.7 2.4 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_02052 +0.7 1.3 hypothetical protein compare
H281DRAFT_06000 +0.7 1.7 transcriptional regulator, AraC family compare
H281DRAFT_06356 +0.7 2.2 RraA famliy compare
H281DRAFT_00252 +0.7 1.8 hypothetical protein compare
H281DRAFT_03163 +0.7 1.7 Protein of unknown function (DUF3348) compare
H281DRAFT_04929 +0.7 1.9 hypothetical protein compare
H281DRAFT_01220 +0.7 1.5 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03796 +0.7 1.8 protein of unknown function (DUF4148) compare
H281DRAFT_03094 +0.7 1.0 transcriptional regulator, MarR family compare
H281DRAFT_01267 +0.7 1.5 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_01841 +0.7 2.1 Asp/Glu/hydantoin racemase compare
H281DRAFT_03242 +0.7 3.3 Predicted dithiol-disulfide isomerase, DsbA family compare
H281DRAFT_06502 +0.7 2.4 transcriptional regulator, LysR family compare
H281DRAFT_06375 +0.7 2.0 hypothetical protein compare
H281DRAFT_04671 +0.7 2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
H281DRAFT_01531 +0.7 2.0 protein of unknown function (DUF4148) compare
H281DRAFT_00812 +0.7 1.7 molybdopterin molybdotransferase compare
H281DRAFT_06506 +0.7 0.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00578 +0.7 1.4 transcriptional regulator, LysR family compare
H281DRAFT_01474 +0.7 1.1 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_05537 +0.7 1.1 transcriptional regulator, IclR family compare
H281DRAFT_04787 +0.7 1.5 polysaccharide transporter, PST family compare
H281DRAFT_05999 +0.7 1.6 hypothetical protein compare
H281DRAFT_02944 +0.7 1.7 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_03069 +0.7 1.0 Uncharacterized conserved protein compare
H281DRAFT_01403 +0.7 1.1 hypothetical protein compare
H281DRAFT_04470 +0.6 1.9 adenosylhomocysteine nucleosidase compare
H281DRAFT_03282 +0.6 1.8 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_06163 +0.6 1.0 hypothetical protein compare
H281DRAFT_01767 +0.6 1.1 hypothetical protein compare
H281DRAFT_00338 +0.6 1.4 Protein of unknown function (DUF2964) compare
H281DRAFT_03667 +0.6 2.9 phospholipid-binding protein, PBP family compare
H281DRAFT_00254 +0.6 3.7 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_01493 +0.6 1.0 aspartate carbamoyltransferase compare
H281DRAFT_00050 +0.6 0.9 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_02246 +0.6 4.7 phosphoenolpyruvate carboxykinase (GTP) compare
H281DRAFT_06135 +0.6 1.3 hypothetical protein compare
H281DRAFT_05943 +0.6 1.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_00240 +0.6 3.5 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06376 +0.6 3.3 transcriptional regulator, LysR family compare
H281DRAFT_06498 +0.6 1.2 Regulator of RNase E activity RraA compare
H281DRAFT_00202 +0.6 1.8 RNA polymerase sigma factor, sigma-70 family compare
H281DRAFT_04368 +0.6 4.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03389 +0.6 1.7 transcriptional regulator, LysR family compare
H281DRAFT_01032 +0.6 2.4 peptide/nickel transport system ATP-binding protein compare
H281DRAFT_01289 +0.6 1.0 mxaA protein compare
H281DRAFT_03226 +0.6 1.0 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_03297 +0.6 1.0 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_00996 +0.6 1.1 ChrR Cupin-like domain-containing protein compare
H281DRAFT_05903 +0.6 1.2 osmotically inducible protein OsmC compare
H281DRAFT_01480 +0.6 1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01734 +0.6 2.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_06581 +0.6 1.4 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03870 +0.6 2.9 hypothetical protein compare
H281DRAFT_03828 +0.6 2.0 MFS transporter, ACS family, hexuronate transporter compare
H281DRAFT_04739 +0.6 1.9 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_03103 +0.6 2.5 hypothetical protein compare
H281DRAFT_06301 +0.6 4.1 L-arabinonolactonase (EC 3.1.1.15) compare
H281DRAFT_01188 +0.6 1.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03448 +0.6 1.1 Predicted ester cyclase compare
H281DRAFT_01742 +0.6 1.5 putative oxidoreductase compare
H281DRAFT_00231 +0.6 2.3 hypothetical protein compare
H281DRAFT_03245 +0.6 2.5 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_01584 +0.6 1.0 enamidase compare
H281DRAFT_04369 +0.6 1.8 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_02230 +0.6 2.2 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_04922 +0.6 1.1 iron complex transport system permease protein compare
H281DRAFT_03454 +0.6 1.7 Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase compare
H281DRAFT_00413 +0.6 2.0 Protein of unknown function (DUF2569) compare
H281DRAFT_05102 +0.6 2.2 ribosome maturation factor RimP compare
H281DRAFT_00418 +0.6 2.5 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03034 +0.6 1.7 xanthine dehydrogenase YagT iron-sulfur-binding subunit compare
H281DRAFT_00528 +0.6 1.3 hypothetical protein compare
H281DRAFT_00405 +0.6 0.8 Predicted small secreted protein compare
H281DRAFT_04789 +0.6 2.1 hypothetical protein compare
H281DRAFT_01290 +0.6 1.5 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
H281DRAFT_05908 +0.6 1.6 hypothetical protein compare
H281DRAFT_00976 +0.6 1.0 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_05313 +0.6 2.7 Polygalacturonase compare
H281DRAFT_00704 +0.6 2.4 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_05003 +0.6 1.5 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_01028 +0.6 0.8 peptide/nickel transport system permease protein compare
H281DRAFT_04954 +0.6 2.4 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_04840 +0.5 3.4 Uncharacterized protein conserved in bacteria compare
H281DRAFT_03864 +0.5 2.1 protocatechuate 3,4-dioxygenase, alpha subunit compare
H281DRAFT_03652 +0.5 1.7 Protein of unknown function (DUF3562) compare
H281DRAFT_00916 +0.5 2.4 short chain enoyl-CoA hydratase /3-hydroxyacyl-CoA dehydrogenase compare
H281DRAFT_03023 +0.5 0.9 Protein of unknown function (DUF2866) compare
H281DRAFT_03499 +0.5 2.6 2-aminoethylphosphonate transport system substrate-binding protein compare
H281DRAFT_03486 +0.5 1.5 osmoprotectant transport system permease protein compare
H281DRAFT_01375 +0.5 1.5 LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway compare
H281DRAFT_06087 +0.5 2.3 Uncharacterized membrane protein compare
H281DRAFT_03894 +0.5 2.4 3-methylfumaryl-CoA hydratase compare
H281DRAFT_01194 +0.5 1.7 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) compare
H281DRAFT_05445 +0.5 1.5 protein of unknown function (DUF4440) compare
H281DRAFT_03428 +0.5 0.8 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_04894 +0.5 1.3 inner membrane transporter RhtA compare
H281DRAFT_04670 +0.5 1.8 tRNA-guanine transglycosylase compare
H281DRAFT_06007 +0.5 2.9 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_03083 +0.5 1.6 Redoxin compare
H281DRAFT_01800 +0.5 2.5 transcriptional regulator, LysR family compare
H281DRAFT_03017 +0.5 1.0 ketopantoate reductase compare
H281DRAFT_01547 +0.5 2.5 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_01173 +0.5 2.1 Outer membrane protein (porin) compare
H281DRAFT_01101 +0.5 1.4 Small-conductance mechanosensitive channel compare
H281DRAFT_00377 +0.5 1.1 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_06388 +0.5 1.2 Sugar phosphate permease compare
H281DRAFT_03810 +0.5 0.9 citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family compare
H281DRAFT_03289 +0.5 1.6 Glycosyltransferase, GT2 family compare
H281DRAFT_04544 +0.5 1.7 diacylglycerol kinase (ATP) compare
H281DRAFT_01607 +0.5 2.4 serine protease, S1-C subfamily, contains C-terminal PDZ domain compare
H281DRAFT_03120 +0.5 1.4 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01338 +0.5 1.9 outer membrane transport energization protein ExbB compare
H281DRAFT_01750 +0.5 1.3 PAS domain S-box-containing protein compare
H281DRAFT_06077 +0.5 3.7 transcriptional regulator, LysR family conserved
H281DRAFT_02742 +0.5 1.8 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_02618 +0.5 2.0 transcriptional regulator, LysR family compare
H281DRAFT_05503 +0.5 2.0 transketolase subunit A compare
H281DRAFT_01319 +0.5 0.8 Uncharacterized protein, UPF0264 family compare
H281DRAFT_04783 +0.5 2.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03076 +0.5 1.4 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_02058 +0.5 0.7 cholesterol transport system auxiliary component compare
H281DRAFT_02459 +0.5 1.2 sarcosine oxidase subunit gamma compare
H281DRAFT_01360 +0.5 2.9 transcriptional regulator, TetR family compare
H281DRAFT_01965 +0.5 0.6 hypothetical protein compare
H281DRAFT_06028 +0.5 1.6 hypothetical protein compare
H281DRAFT_06532 +0.5 2.5 protein of unknown function (DUF4136) compare
H281DRAFT_01053 +0.5 0.5 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_01675 +0.5 1.9 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02741 +0.5 1.1 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01680 +0.5 1.9 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03252 +0.5 1.6 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-) compare
H281DRAFT_03645 +0.5 1.2 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_02756 +0.5 0.6 Cupin domain protein compare
H281DRAFT_00710 +0.5 0.8 tRNA_Leu_CAG compare
H281DRAFT_03118 +0.5 1.2 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_05883 +0.5 1.7 ornithine cyclodeaminase (EC 4.3.1.12) compare
H281DRAFT_03345 +0.5 1.7 NHL repeat-containing protein compare
H281DRAFT_03848 +0.5 1.7 MFS transporter, AAHS family, 4-hydroxybenzoate transporter compare
H281DRAFT_06025 +0.5 1.2 chromate transporter compare
H281DRAFT_00729 +0.5 2.2 O-antigen ligase like membrane protein compare
H281DRAFT_04127 +0.5 1.6 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_03030 +0.5 1.7 N-acetylglucosaminyl deacetylase, LmbE family compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium propionate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium propionate across organisms