Experiment set7IT046 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with bismuth(III) chloride 0.000025 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -7.3 -5.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4352 -4.5 -4.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4353 -3.2 -5.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5014 -2.9 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4369 -2.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5536 -2.9 -2.7 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4908 -2.7 -9.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3303 -2.7 -6.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5316 -2.5 -3.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4162 -2.4 -4.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4153 -2.4 -2.7 Sensory box histidine kinase compare
Pf6N2E2_4416 -2.3 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_4204 -2.0 -2.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3607 -2.0 -7.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3060 -1.9 -4.2 Outer membrane protein H precursor compare
Pf6N2E2_2127 -1.9 -5.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5508 -1.8 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2586 -1.8 -2.6 Hpt domain protein compare
Pf6N2E2_3658 -1.7 -7.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5727 -1.7 -4.8 FIG00955360: hypothetical protein compare
Pf6N2E2_2277 -1.7 -2.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1040 -1.7 -2.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2010 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_4454 -1.5 -4.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2827 -1.5 -1.9 hypothetical protein compare
Pf6N2E2_3351 -1.5 -4.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4803 -1.4 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5430 -1.4 -5.9 Transglycosylase, Slt family compare
Pf6N2E2_3661 -1.4 -5.2 hypothetical protein compare
Pf6N2E2_3908 -1.4 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4059 -1.4 -1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_4599 -1.4 -2.2 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4159 -1.3 -3.4 Cytochrome c4 compare
Pf6N2E2_4418 -1.3 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3460 -1.3 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3763 -1.3 -3.0 hypothetical protein compare
Pf6N2E2_1147 -1.3 -2.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_3847 -1.2 -3.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_451 -1.2 -2.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_902 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_5527 -1.2 -2.1 Cold shock protein CspC compare
Pf6N2E2_2325 -1.2 -3.6 Recombination protein RecR compare
Pf6N2E2_2217 -1.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1116 -1.2 -1.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2940 -1.1 -3.5 OmpA family protein compare
Pf6N2E2_4187 -1.1 -3.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5103 -1.1 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4773 -1.1 -1.4 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1758 -1.1 -2.0 Transcriptional regulator, MarR family compare
Pf6N2E2_2317 -1.1 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2311 -1.1 -4.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2074 -1.1 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3261 -1.1 -3.0 hypothetical protein compare
Pf6N2E2_1545 -1.0 -3.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_6140 -1.0 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2013 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_3588 -1.0 -3.3 hypothetical protein compare
Pf6N2E2_5340 -1.0 -2.8 Stringent starvation protein A compare
Pf6N2E2_5339 -1.0 -3.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5406 -1.0 -1.9 FIG00958224: hypothetical protein compare
Pf6N2E2_5242 -1.0 -1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_855 -0.9 -2.8 Transcriptional regulator, IclR family compare
Pf6N2E2_4417 -0.9 -2.3 Protein of unknown function DUF484 compare
Pf6N2E2_1352 -0.9 -2.2 Cation transport ATPase compare
Pf6N2E2_2310 -0.9 -5.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4197 -0.9 -5.2 DNA recombination and repair protein RecF compare
Pf6N2E2_1502 -0.9 -1.8 Two-component system regulatory protein compare
Pf6N2E2_3260 -0.9 -2.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5155 -0.9 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4684 -0.9 -3.2 hypothetical protein compare
Pf6N2E2_5069 -0.9 -3.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5428 -0.9 -4.5 DNA recombination and repair protein RecO compare
Pf6N2E2_3841 -0.9 -3.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4743 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_2984 -0.9 -2.1 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4614 -0.9 -2.7 twitching motility protein PilH compare
Pf6N2E2_3198 -0.9 -1.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4797 -0.9 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1870 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_2933 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_5001 -0.8 -1.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2693 -0.8 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2318 -0.8 -4.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5494 -0.8 -3.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2126 -0.8 -3.7 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2510 -0.8 -2.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5068 -0.8 -5.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_788 -0.8 -3.5 hypothetical protein compare
Pf6N2E2_4638 -0.8 -2.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3014 -0.8 -1.9 P2-like prophage tail protein X compare
Pf6N2E2_43 -0.8 -3.3 Histidine permease YuiF compare
Pf6N2E2_718 -0.8 -2.5 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_1031 -0.8 -1.8 Alkanesulfonates transport system permease protein compare
Pf6N2E2_5049 -0.8 -1.0 acetyltransferase, GNAT family compare
Pf6N2E2_3461 -0.8 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2483 -0.8 -1.8 Deoxyribonuclease TatD compare
Pf6N2E2_4438 -0.8 -2.9 hypothetical protein compare
Pf6N2E2_5452 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_3534 -0.8 -2.1 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2281 -0.7 -1.5 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_1606 -0.7 -3.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_3255 -0.7 -2.7 YrbA protein compare
Pf6N2E2_622 -0.7 -3.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_1034 -0.7 -1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3132 -0.7 -2.0 FIG00954548: hypothetical protein compare
Pf6N2E2_1699 -0.7 -1.8 FIG00955832: hypothetical protein compare
Pf6N2E2_698 -0.7 -1.5 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_4620 -0.7 -2.8 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_3373 -0.7 -2.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4886 -0.7 -4.8 Catalase (EC 1.11.1.6) compare
Pf6N2E2_5337 -0.7 -2.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3062 -0.7 -2.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4075 -0.7 -2.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2340 -0.7 -2.6 Transcriptional regulator, GntR family compare
Pf6N2E2_2473 -0.7 -1.0 Major outer membrane lipoprotein I compare
Pf6N2E2_1968 -0.7 -2.3 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_133 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_1617 -0.7 -1.0 COG2199: FOG: GGDEF domain compare
Pf6N2E2_146 -0.7 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_5013 -0.7 -2.2 Putative membrane protein compare
Pf6N2E2_423 -0.7 -1.4 Putative phosphatase YfbT compare
Pf6N2E2_3842 -0.7 -2.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3055 -0.7 -2.2 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_4531 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_3840 -0.7 -2.2 FIG00956267: hypothetical protein compare
Pf6N2E2_625 -0.7 -2.7 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2219 -0.7 -1.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3839 -0.7 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2424 -0.7 -1.9 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_5869 -0.7 -1.6 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4273 -0.7 -3.3 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_304 -0.7 -1.8 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_3516 -0.7 -1.6 Probable transmembrane protein compare
Pf6N2E2_3611 -0.6 -0.7 HflC protein compare
Pf6N2E2_919 -0.6 -1.4 FIG00954373: hypothetical protein compare
Pf6N2E2_3876 -0.6 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5523 -0.6 -1.6 Small-conductance mechanosensitive channel compare
Pf6N2E2_34 -0.6 -1.9 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_443 -0.6 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_723 -0.6 -2.3 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_441 -0.6 -1.5 FIG00958773: hypothetical protein compare
Pf6N2E2_2507 -0.6 -2.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_161 -0.6 -1.6 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_4168 -0.6 -2.9 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_2501 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_4372 -0.6 -2.2 FIG00460773: hypothetical protein compare
Pf6N2E2_620 -0.6 -3.5 BatD compare
Pf6N2E2_33 -0.6 -1.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_736 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_3656 -0.6 -3.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_4601 -0.6 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2189 -0.6 -2.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3912 -0.6 -2.8 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_5338 -0.6 -3.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3634 -0.6 -1.1 Transporter compare
Pf6N2E2_663 -0.6 -1.8 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_624 -0.6 -2.2 hypothetical protein PA3071 compare
Pf6N2E2_5156 -0.6 -1.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2970 -0.6 -1.8 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_2261 -0.6 -2.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_955 -0.6 -1.5 FIG00953508: hypothetical protein compare
Pf6N2E2_5633 -0.6 -4.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3546 -0.6 -1.5 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_1082 -0.6 -1.7 CopG protein compare
Pf6N2E2_1784 -0.6 -1.8 Methyl-accepting chemotaxis protein compare
Pf6N2E2_623 -0.6 -0.9 FIG00954674: hypothetical protein compare
Pf6N2E2_1805 -0.6 -2.5 Multidrug resistance protein B compare
Pf6N2E2_1691 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_1424 -0.6 -1.1 transcriptional regulator, TetR family compare
Pf6N2E2_3257 -0.6 -1.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1666 -0.6 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_2313 -0.6 -1.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3725 -0.6 -1.5 FIG085779: Lipoprotein compare
Pf6N2E2_5714 -0.6 -1.5 Flavoprotein WrbA compare
Pf6N2E2_4499 -0.6 -1.6 protein of unknown function DUF86 compare
Pf6N2E2_4216 -0.6 -2.2 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_2765 -0.6 -2.2 Tricarboxylate transport transcriptional regulator TctD compare
Pf6N2E2_3252 -0.6 -3.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_1371 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_2552 -0.6 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4999 -0.6 -3.1 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2012 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_3641 -0.6 -1.2 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_30 -0.6 -2.4 Antisigma transmembrane sensor FpvR compare
Pf6N2E2_1821 -0.6 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_700 -0.5 -2.0 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_1462 -0.5 -1.8 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_2274 -0.5 -2.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1582 -0.5 -1.4 HlyD family secretion protein compare
Pf6N2E2_6064 -0.5 -2.5 2-methylaconitate isomerase compare
Pf6N2E2_4072 -0.5 -2.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2309 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_3782 -0.5 -1.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1099 -0.5 -0.8 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5252 -0.5 -0.6 FIG00956396: hypothetical protein compare
Pf6N2E2_3140 -0.5 -1.5 FIG00953680: hypothetical protein compare
Pf6N2E2_2073 -0.5 -2.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_40 -0.5 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2139 -0.5 -1.7 Paraquat-inducible protein A compare
Pf6N2E2_621 -0.5 -2.3 TPR domain protein in aerotolerance operon compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress bismuth(III) chloride across organisms