Experiment set7IT046 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with bismuth(III) chloride 0.000025 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3667 +5.1 8.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1056 +3.8 5.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2465 +1.8 7.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5720 +1.8 14.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3666 +1.4 7.7 InaA protein compare
Pf6N2E2_4427 +1.2 3.4 FIG00954215: hypothetical protein compare
Pf6N2E2_6090 +1.1 3.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2022 +1.1 6.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1981 +1.1 3.2 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5178 +1.0 2.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3663 +1.0 6.4 Glycosyl transferase compare
Pf6N2E2_2447 +1.0 7.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5902 +0.9 3.2 hypothetical protein compare
Pf6N2E2_2822 +0.9 5.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_6062 +0.8 6.2 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_1506 +0.8 1.9 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_1694 +0.8 1.7 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2919 +0.8 2.9 FIG00955830: hypothetical protein compare
Pf6N2E2_3271 +0.8 3.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4747 +0.8 2.1 Transmembrane sensor compare
Pf6N2E2_2519 +0.8 1.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_4969 +0.8 1.6 hypothetical protein compare
Pf6N2E2_600 +0.8 2.2 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_1391 +0.8 2.9 DNA-binding response regulator, LuxR family compare
Pf6N2E2_504 +0.8 1.9 DNA-binding response regulator compare
Pf6N2E2_5505 +0.8 1.4 hypothetical protein compare
Pf6N2E2_3171 +0.8 1.5 hypothetical protein compare
Pf6N2E2_3696 +0.8 1.5 hypothetical protein compare
Pf6N2E2_3723 +0.8 1.8 FIG022199: FAD-binding protein compare
Pf6N2E2_2578 +0.7 1.7 Flagellar biosynthesis protein FliR compare
Pf6N2E2_4448 +0.7 2.5 probable P23 protein compare
Pf6N2E2_720 +0.7 4.1 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_4974 +0.7 5.3 DedA protein compare
Pf6N2E2_2195 +0.7 1.9 cI compare
Pf6N2E2_1283 +0.7 2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3569 +0.7 2.1 hypothetical protein compare
Pf6N2E2_3021 +0.7 1.3 hypothetical protein compare
Pf6N2E2_2200 +0.7 1.3 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5613 +0.7 1.5 FIG00953674: hypothetical protein compare
Pf6N2E2_3293 +0.7 1.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_5499 +0.7 1.1 hypothetical protein compare
Pf6N2E2_1162 +0.7 1.2 Transmembrane amino acid efflux protein compare
Pf6N2E2_3713 +0.7 2.1 Acyl carrier protein compare
Pf6N2E2_2413 +0.6 0.9 FIG074102: hypothetical protein compare
Pf6N2E2_2842 +0.6 1.5 hypothetical protein compare
Pf6N2E2_6099 +0.6 1.3 tRNA-Glu-TTC compare
Pf6N2E2_1782 +0.6 2.1 STAS domain protein compare
Pf6N2E2_1723 +0.6 1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_737 +0.6 1.5 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_4640 +0.6 1.1 hypothetical protein compare
Pf6N2E2_4584 +0.6 2.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_1718 +0.6 1.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_5237 +0.6 1.4 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_3206 +0.6 0.9 hypothetical protein compare
Pf6N2E2_2582 +0.6 2.3 Flagellar motor switch protein FliN compare
Pf6N2E2_3037 +0.6 4.4 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2017 +0.6 2.2 DNA-binding protein compare
Pf6N2E2_1128 +0.6 1.4 Two-component response regulator compare
Pf6N2E2_5622 +0.6 1.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4540 +0.6 2.4 hypothetical protein compare
Pf6N2E2_5226 +0.6 1.6 FIG00955589: hypothetical protein compare
Pf6N2E2_962 +0.6 1.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5646 +0.6 1.1 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2181 +0.6 1.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_479 +0.6 2.4 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_971 +0.6 1.1 hypothetical protein compare
Pf6N2E2_3870 +0.6 1.4 hypothetical protein compare
Pf6N2E2_2390 +0.6 1.5 FIG00959101: hypothetical protein compare
Pf6N2E2_891 +0.6 1.5 4-oxalocrotonate tautomerase compare
Pf6N2E2_464 +0.6 1.8 Sensory histidine kinase QseC compare
Pf6N2E2_4541 +0.6 1.1 hypothetical protein compare
Pf6N2E2_3221 +0.6 1.5 FIG00352444: hypothetical protein compare
Pf6N2E2_1682 +0.6 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1361 +0.6 2.1 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf6N2E2_3161 +0.5 1.7 hypothetical protein compare
Pf6N2E2_3108 +0.5 1.5 FIG00953405: hypothetical protein compare
Pf6N2E2_3325 +0.5 1.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_2175 +0.5 2.7 Transcriptional regulator, RpiR family compare
Pf6N2E2_2717 +0.5 1.8 putative cytoplasmic protein compare
Pf6N2E2_5173 +0.5 2.3 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) compare
Pf6N2E2_4668 +0.5 2.7 FIG00953367: hypothetical protein compare
Pf6N2E2_4349 +0.5 2.4 Superfamily II DNA and RNA helicases compare
Pf6N2E2_1092 +0.5 2.2 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_1806 +0.5 1.7 hypothetical protein compare
Pf6N2E2_2223 +0.5 1.9 hypothetical protein compare
Pf6N2E2_1796 +0.5 2.2 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_5057 +0.5 2.3 hypothetical protein compare
Pf6N2E2_2752 +0.5 3.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1508 +0.5 2.1 DNA-binding response regulator compare
Pf6N2E2_5264 +0.5 1.5 hypothetical protein compare
Pf6N2E2_1674 +0.5 3.3 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_1759 +0.5 0.9 uncharacterized domain 1 compare
Pf6N2E2_5919 +0.5 1.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_4054 +0.5 1.3 Osmotically inducible protein C compare
Pf6N2E2_309 +0.5 0.9 FIG00957702: hypothetical protein compare
Pf6N2E2_4733 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5476 +0.5 1.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_425 +0.5 1.8 FIG00957304: hypothetical protein compare
Pf6N2E2_3550 +0.5 1.4 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_5172 +0.5 1.2 FOG: TPR repeat compare
Pf6N2E2_4459 +0.5 1.4 Transcriptional regulator, GntR family compare
Pf6N2E2_2369 +0.5 2.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_3282 +0.5 1.0 FIG005080: Possible exported protein compare
Pf6N2E2_1212 +0.5 2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2367 +0.5 1.3 hypothetical protein compare
Pf6N2E2_987 +0.5 1.0 hypothetical protein compare
Pf6N2E2_906 +0.5 1.5 ISPpu14, transposase Orf2 compare
Pf6N2E2_2588 +0.5 1.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_6006 +0.5 2.4 L-rhamnose operon transcriptional activator RhaR compare
Pf6N2E2_1878 +0.5 2.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1472 +0.5 2.3 Cytochrome b561 compare
Pf6N2E2_3597 +0.5 2.5 hypothetical protein compare
Pf6N2E2_3305 +0.5 1.7 hypothetical protein compare
Pf6N2E2_4052 +0.5 1.0 FIG00955481: hypothetical protein compare
Pf6N2E2_1838 +0.5 1.6 6-hexanolactone hydrolase compare
Pf6N2E2_1754 +0.5 1.5 FIG00731982: hypothetical protein compare
Pf6N2E2_5298 +0.5 2.0 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_3248 +0.5 2.2 Probable transmembrane protein compare
Pf6N2E2_6052 +0.5 1.6 Hydantoin racemase (EC 5.1.99.-) compare
Pf6N2E2_799 +0.5 1.8 hypothetical protein compare
Pf6N2E2_5906 +0.5 1.7 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_3454 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1514 +0.5 2.1 lipoprotein OprI, putative compare
Pf6N2E2_1563 +0.5 1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_5086 +0.5 0.8 hypothetical protein compare
Pf6N2E2_4562 +0.5 1.6 L-cystine uptake protein TcyP compare
Pf6N2E2_4077 +0.5 1.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3541 +0.5 1.9 Putative multicopper oxidases compare
Pf6N2E2_3947 +0.4 0.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_295 +0.4 1.1 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_81 +0.4 1.5 hypothetical protein compare
Pf6N2E2_3527 +0.4 1.9 hypothetical protein compare
Pf6N2E2_6085 +0.4 1.3 Aha1 domain superfamily compare
Pf6N2E2_1006 +0.4 1.7 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2597 +0.4 3.3 Flagellar regulatory protein FleQ compare
Pf6N2E2_3200 +0.4 2.4 Putative membrane protein compare
Pf6N2E2_2375 +0.4 1.4 Response regulator NasT compare
Pf6N2E2_2306 +0.4 2.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4224 +0.4 2.5 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_170 +0.4 1.3 lipoprotein, putative compare
Pf6N2E2_2314 +0.4 1.5 VapB protein (antitoxin to VapC) compare
Pf6N2E2_5345 +0.4 3.0 LppC putative lipoprotein compare
Pf6N2E2_3529 +0.4 1.0 Toxin A compare
Pf6N2E2_537 +0.4 2.0 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_1972 +0.4 1.4 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4694 +0.4 1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_831 +0.4 1.0 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_2080 +0.4 0.7 hypothetical protein compare
Pf6N2E2_4477 +0.4 2.1 Z-ring-associated protein ZapA compare
Pf6N2E2_706 +0.4 2.4 Nitric oxide reductase activation protein NorQ compare
Pf6N2E2_2835 +0.4 1.3 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5468 +0.4 1.6 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_1293 +0.4 1.1 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_1711 +0.4 2.2 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) compare
Pf6N2E2_2282 +0.4 1.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3739 +0.4 2.0 General secretion pathway protein K compare
Pf6N2E2_6059 +0.4 1.3 FIG008443: hypothetical protein compare
Pf6N2E2_841 +0.4 1.2 hypothetical protein compare
Pf6N2E2_3009 +0.4 1.1 Phage tail tube protein compare
Pf6N2E2_2178 +0.4 2.2 FIG00960144: hypothetical protein compare
Pf6N2E2_2162 +0.4 1.8 Cytochrome c4 compare
Pf6N2E2_748 +0.4 2.0 Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine compare
Pf6N2E2_2103 +0.4 0.7 hypothetical protein compare
Pf6N2E2_1178 +0.4 1.7 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_1676 +0.4 0.8 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_972 +0.4 2.2 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster compare
Pf6N2E2_4545 +0.4 1.0 hypothetical protein compare
Pf6N2E2_2083 +0.4 1.2 hypothetical protein compare
Pf6N2E2_893 +0.4 0.9 hypothetical protein compare
Pf6N2E2_2628 +0.4 2.0 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_958 +0.4 1.5 hypothetical protein compare
Pf6N2E2_689 +0.4 1.1 FIG00956189: hypothetical protein compare
Pf6N2E2_5425 +0.4 0.7 hypothetical protein compare
Pf6N2E2_3731 +0.4 1.8 hypothetical protein compare
Pf6N2E2_692 +0.4 1.3 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_4506 +0.4 1.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1470 +0.4 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_4492 +0.4 2.1 FIG00953395: hypothetical protein compare
Pf6N2E2_1807 +0.4 2.2 hypothetical protein compare
Pf6N2E2_1500 +0.4 1.9 LysR family transcriptional regulator lrhA compare
Pf6N2E2_6060 +0.4 1.6 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_5936 +0.4 0.7 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_3226 +0.4 1.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2603 +0.4 2.2 hypothetical protein compare
Pf6N2E2_5405 +0.4 2.0 ABC transporter for D-Alanine, ATPase component (from data) compare
Pf6N2E2_1193 +0.4 1.7 Outer membrane porin, OprD family compare
Pf6N2E2_5346 +0.4 1.2 rRNA small subunit methyltransferase I compare
Pf6N2E2_2592 +0.4 2.1 Flagellar motor switch protein FliG compare
Pf6N2E2_572 +0.4 1.0 hypothetical protein compare
Pf6N2E2_2790 +0.4 1.3 Helix-turn-helix motif compare
Pf6N2E2_5243 +0.4 1.0 hypothetical protein compare
Pf6N2E2_4124 +0.4 3.0 Uncharacterized protein with LysM domain, COG1652 compare
Pf6N2E2_1741 +0.4 1.7 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_2341 +0.4 2.3 Benzoate transport protein compare
Pf6N2E2_3277 +0.4 1.3 FagA protein compare
Pf6N2E2_3589 +0.4 1.2 Lysine decarboxylase family compare
Pf6N2E2_1469 +0.4 1.2 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_1817 +0.4 1.1 hypothetical protein compare
Pf6N2E2_3528 +0.4 1.7 hypothetical protein compare
Pf6N2E2_2930 +0.4 2.0 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress bismuth(III) chloride across organisms