Experiment set7IT045 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Europium(III) chloride 0.000195313 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -7.3 -5.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -5.4 -7.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5536 -3.5 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4162 -2.6 -4.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4416 -2.4 -4.0 Tyrosine recombinase XerC compare
Pf6N2E2_4352 -2.4 -3.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4908 -2.3 -7.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_746 -2.1 -2.6 FIG00958097: hypothetical protein compare
Pf6N2E2_3460 -2.1 -2.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3351 -2.1 -5.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3461 -2.0 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4153 -2.0 -2.3 Sensory box histidine kinase compare
Pf6N2E2_4369 -1.9 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5103 -1.9 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2127 -1.9 -4.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2217 -1.8 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2325 -1.8 -6.3 Recombination protein RecR compare
Pf6N2E2_3908 -1.7 -6.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4372 -1.7 -4.6 FIG00460773: hypothetical protein compare
Pf6N2E2_5261 -1.7 -1.7 FIG00956983: hypothetical protein compare
Pf6N2E2_3303 -1.6 -3.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3607 -1.6 -6.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4418 -1.5 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5155 -1.5 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5156 -1.5 -2.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_6099 -1.5 -1.8 tRNA-Glu-TTC compare
Pf6N2E2_2180 -1.4 -3.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_70 -1.4 -2.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5316 -1.3 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4206 -1.3 -2.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5739 -1.3 -1.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_4187 -1.3 -3.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4204 -1.3 -1.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5242 -1.3 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5508 -1.3 -1.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_1774 -1.3 -2.3 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_3134 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_2753 -1.2 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_3261 -1.2 -3.7 hypothetical protein compare
Pf6N2E2_4160 -1.2 -1.4 Cytochrome c5 compare
Pf6N2E2_2126 -1.2 -4.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3373 -1.2 -2.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5640 -1.2 -2.0 FIG00955597: hypothetical protein compare
Pf6N2E2_2311 -1.2 -5.8 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5006 -1.2 -5.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2309 -1.2 -3.2 hypothetical protein compare
Pf6N2E2_58 -1.2 -1.7 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_3941 -1.1 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2869 -1.1 -0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4797 -1.1 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4072 -1.1 -3.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4454 -1.1 -3.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2320 -1.1 -2.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3060 -1.1 -2.5 Outer membrane protein H precursor compare
Pf6N2E2_4620 -1.1 -3.9 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_2473 -1.1 -1.4 Major outer membrane lipoprotein I compare
Pf6N2E2_3786 -1.1 -3.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_4197 -1.1 -5.3 DNA recombination and repair protein RecF compare
Pf6N2E2_2755 -1.1 -1.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1694 -1.0 -1.5 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_3658 -1.0 -4.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2285 -1.0 -1.7 FIG00954079: hypothetical protein compare
Pf6N2E2_5527 -1.0 -1.5 Cold shock protein CspC compare
Pf6N2E2_1611 -1.0 -2.6 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_2459 -1.0 -2.3 Organic hydroperoxide resistance protein compare
Pf6N2E2_98 -1.0 -2.2 putative transmembrane protein compare
Pf6N2E2_5845 -1.0 -4.0 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_4205 -1.0 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4886 -1.0 -6.0 Catalase (EC 1.11.1.6) compare
Pf6N2E2_6058 -1.0 -4.1 FIG139976: hypothetical protein compare
Pf6N2E2_4928 -1.0 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_1987 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_2508 -1.0 -3.1 hypothetical protein compare
Pf6N2E2_5337 -0.9 -3.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_443 -0.9 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4673 -0.9 -2.3 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_3849 -0.9 -2.4 FIG00954739: hypothetical protein compare
Pf6N2E2_5178 -0.9 -1.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5406 -0.9 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_5869 -0.9 -2.1 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_43 -0.9 -3.9 Histidine permease YuiF compare
Pf6N2E2_5319 -0.9 -5.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_2317 -0.9 -2.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_6140 -0.9 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5428 -0.9 -3.8 DNA recombination and repair protein RecO compare
Pf6N2E2_338 -0.9 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1545 -0.9 -3.2 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2912 -0.9 -1.6 FIG00954094: hypothetical protein compare
Pf6N2E2_122 -0.9 -2.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5069 -0.9 -2.9 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1617 -0.9 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4273 -0.8 -3.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5633 -0.8 -6.9 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4073 -0.8 -3.4 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_2424 -0.8 -2.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_3300 -0.8 -2.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3744 -0.8 -2.2 General secretion pathway protein F compare
Pf6N2E2_888 -0.8 -2.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3100 -0.8 -2.5 FIG00953063: hypothetical protein compare
Pf6N2E2_2384 -0.8 -2.3 CmpX compare
Pf6N2E2_3039 -0.8 -4.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2373 -0.8 -2.5 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_5571 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_5668 -0.8 -2.7 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_2605 -0.8 -3.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5846 -0.8 -5.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_3534 -0.8 -1.6 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2188 -0.8 -3.0 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_2010 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_2074 -0.8 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5727 -0.8 -3.7 FIG00955360: hypothetical protein compare
Pf6N2E2_2496 -0.8 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_142 -0.8 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4773 -0.8 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5342 -0.8 -2.0 21 kDa hemolysin precursor compare
Pf6N2E2_2509 -0.8 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4074 -0.7 -5.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_447 -0.7 -2.5 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3841 -0.7 -3.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4969 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_5111 -0.7 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3770 -0.7 -1.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1596 -0.7 -1.5 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1502 -0.7 -1.7 Two-component system regulatory protein compare
Pf6N2E2_5068 -0.7 -4.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3842 -0.7 -2.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5318 -0.7 -6.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2417 -0.7 -2.8 Sensor histidine kinase compare
Pf6N2E2_3285 -0.7 -2.5 Rod shape-determining protein MreD compare
Pf6N2E2_5339 -0.7 -3.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_841 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_3638 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_2258 -0.7 -4.1 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_288 -0.7 -1.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5632 -0.7 -2.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_1598 -0.7 -2.5 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_2536 -0.7 -1.3 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_234 -0.7 -1.3 FIG00454312: hypothetical protein compare
Pf6N2E2_1504 -0.7 -2.5 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_4438 -0.7 -2.8 hypothetical protein compare
Pf6N2E2_5320 -0.7 -3.8 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3839 -0.7 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3845 -0.7 -3.6 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
Pf6N2E2_5646 -0.7 -0.9 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5086 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_1920 -0.6 -2.0 Rubredoxin compare
Pf6N2E2_1966 -0.6 -1.7 SAM-dependent methyltransferases compare
Pf6N2E2_1821 -0.6 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_237 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_639 -0.6 -2.1 FIG01285020: hypothetical protein compare
Pf6N2E2_4417 -0.6 -1.5 Protein of unknown function DUF484 compare
Pf6N2E2_4888 -0.6 -5.5 Excinuclease ABC subunit A compare
Pf6N2E2_3219 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_6039 -0.6 -3.4 Probable lipoprotein signal peptide compare
Pf6N2E2_4181 -0.6 -0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_2992 -0.6 -2.6 Regulatory protein RecX compare
Pf6N2E2_3270 -0.6 -1.7 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4075 -0.6 -2.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_440 -0.6 -1.6 FIG00954920: hypothetical protein compare
Pf6N2E2_623 -0.6 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_1833 -0.6 -2.8 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / Enoyl CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2113 -0.6 -2.0 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_5150 -0.6 -2.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4661 -0.6 -2.0 KluA regulatory protein compare
Pf6N2E2_2962 -0.6 -1.5 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2790 -0.6 -1.7 Helix-turn-helix motif compare
Pf6N2E2_2318 -0.6 -3.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2114 -0.6 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_75 -0.6 -2.1 Colicin V production protein compare
Pf6N2E2_945 -0.6 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_1691 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_2065 -0.6 -2.0 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_4658 -0.6 -2.8 FIG00955006: hypothetical protein compare
Pf6N2E2_1932 -0.6 -2.8 Transcriptional regulator, IclR family compare
Pf6N2E2_1081 -0.6 -1.3 probable membrane protein YPO3302 compare
Pf6N2E2_3191 -0.6 -2.9 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_476 -0.6 -2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3537 -0.6 -2.5 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_2310 -0.6 -3.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5841 -0.6 -0.8 GlcG protein compare
Pf6N2E2_2371 -0.6 -1.7 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_5768 -0.6 -1.9 DNA recombination-dependent growth factor C compare
Pf6N2E2_1298 -0.6 -2.1 Xanthine transporter,putative compare
Pf6N2E2_2984 -0.6 -1.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4092 -0.6 -1.6 FIG00954395: hypothetical protein compare
Pf6N2E2_1525 -0.6 -1.8 Universal stress protein family 5 compare
Pf6N2E2_521 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_5560 -0.6 -1.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_5338 -0.6 -3.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_953 -0.6 -1.6 FIG00958851: hypothetical protein compare
Pf6N2E2_2823 -0.6 -2.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4584 -0.6 -0.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_871 -0.6 -2.4 sensor histidine kinase compare
Pf6N2E2_5616 -0.6 -2.6 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf6N2E2_1884 -0.6 -2.1 oxidoreductase, short-chain dehydrogenase/reductase family compare
Pf6N2E2_2588 -0.5 -1.4 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3876 -0.5 -1.9 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2003 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_3024 -0.5 -1.6 Phage tail fibers compare
Pf6N2E2_3284 -0.5 -2.7 Septum formation protein Maf compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Europium(III) chloride across organisms