Experiment set7IT045 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01069 +1.3 2.6 Cytosine/adenosine deaminase compare
H281DRAFT_01509 +1.1 2.7 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_05281 +1.0 1.8 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_06046 +1.0 1.8 serine/threonine protein phosphatase 1 compare
H281DRAFT_01632 +1.0 8.7 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_05980 +1.0 1.9 Catechol 2,3-dioxygenase compare
H281DRAFT_03346 +0.9 1.8 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_02742 +0.9 2.7 Acyl-CoA synthetase (NDP forming) compare
H281DRAFT_02700 +0.9 2.7 feruloyl esterase compare
H281DRAFT_02441 +0.9 1.6 putative ABC transport system ATP-binding protein compare
H281DRAFT_04172 +0.9 2.6 transcriptional regulator, TetR family compare
H281DRAFT_01750 +0.9 2.9 PAS domain S-box-containing protein compare
H281DRAFT_00255 +0.9 2.0 hypothetical protein compare
H281DRAFT_04628 +0.9 2.3 FdhD protein compare
H281DRAFT_03440 +0.8 1.8 PAP2 superfamily protein compare
H281DRAFT_01111 +0.8 1.1 transcriptional regulator, DeoR family compare
H281DRAFT_04425 +0.8 1.6 hypothetical protein compare
H281DRAFT_00406 +0.8 2.3 Signal transduction histidine kinase compare
H281DRAFT_06081 +0.8 2.0 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_01052 +0.8 1.7 hypothetical protein compare
H281DRAFT_03221 +0.8 2.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05632 +0.8 1.7 hypothetical protein compare
H281DRAFT_05830 +0.8 1.0 hypothetical protein compare
H281DRAFT_04189 +0.8 2.9 pyruvate kinase compare
H281DRAFT_04226 +0.8 1.2 hypothetical protein compare
H281DRAFT_04735 +0.8 1.8 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_06003 +0.8 2.1 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04941 +0.8 1.0 Uncharacterized conserved protein, Ntn-hydrolase superfamily compare
H281DRAFT_00298 +0.8 2.4 hypothetical protein compare
H281DRAFT_04933 +0.8 1.4 Nitroreductase compare
H281DRAFT_00757 +0.8 1.1 hypothetical protein compare
H281DRAFT_06285 +0.8 1.8 3-dehydroquinate dehydratase compare
H281DRAFT_01417 +0.8 2.0 anti-sigma-28 factor, FlgM family compare
H281DRAFT_05743 +0.8 3.0 CheW protein compare
H281DRAFT_02067 +0.8 2.8 hypothetical protein compare
H281DRAFT_06135 +0.7 1.6 hypothetical protein compare
H281DRAFT_04618 +0.7 1.7 putative regulatory protein, FmdB family compare
H281DRAFT_01131 +0.7 1.7 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05438 +0.7 1.5 transcriptional regulator, IclR family compare
H281DRAFT_01190 +0.7 1.1 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_03165 +0.7 1.8 Flagellar motor protein MotB compare
H281DRAFT_03428 +0.7 1.1 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_05121 +0.7 1.7 hypothetical protein compare
H281DRAFT_01477 +0.7 2.0 protein CcmA, bactofilin family compare
H281DRAFT_02614 +0.7 2.1 L-glutamine ABC transporter membrane protein compare
H281DRAFT_06576 +0.7 2.6 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_01319 +0.7 1.2 Uncharacterized protein, UPF0264 family compare
H281DRAFT_03451 +0.7 1.8 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_06037 +0.7 0.9 molybdate transport system substrate-binding protein compare
H281DRAFT_04427 +0.7 2.0 hypothetical protein compare
H281DRAFT_02588 +0.7 3.6 PRC-barrel domain-containing protein compare
H281DRAFT_00148 +0.7 1.9 chromosome partitioning protein compare
H281DRAFT_04654 +0.7 1.0 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_02547 +0.7 2.1 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_06346 +0.7 2.4 Predicted deacylase compare
H281DRAFT_01390 +0.7 1.2 hypothetical protein compare
H281DRAFT_04932 +0.7 2.0 MbtH protein compare
H281DRAFT_03837 +0.7 1.7 hypothetical protein compare
H281DRAFT_02890 +0.7 2.0 peroxiredoxin (alkyl hydroperoxide reductase subunit C) compare
H281DRAFT_05974 +0.7 1.1 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_03723 +0.7 1.3 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05768 +0.7 2.7 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01273 +0.7 2.2 feruloyl esterase compare
H281DRAFT_03475 +0.7 1.1 hypothetical protein compare
H281DRAFT_03120 +0.7 1.4 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04150 +0.7 2.6 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05315 +0.7 1.4 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_02508 +0.7 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01244 +0.7 1.8 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_02888 +0.7 1.3 hypothetical protein compare
H281DRAFT_01919 +0.7 2.3 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_03400 +0.7 2.4 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03094 +0.7 1.0 transcriptional regulator, MarR family compare
H281DRAFT_03389 +0.7 2.0 transcriptional regulator, LysR family compare
H281DRAFT_00015 +0.6 1.7 hypothetical protein compare
H281DRAFT_03184 +0.6 0.9 cation diffusion facilitator family transporter compare
H281DRAFT_02560 +0.6 3.2 LPS-assembly protein compare
H281DRAFT_00535 +0.6 1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD compare
H281DRAFT_02178 +0.6 2.1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_01377 +0.6 1.2 hypothetical protein compare
H281DRAFT_00687 +0.6 1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_02698 +0.6 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06027 +0.6 4.8 AMP nucleosidase compare
H281DRAFT_03299 +0.6 1.5 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_05755 +0.6 0.7 flagellar biosynthesis protein FlhG compare
H281DRAFT_03058 +0.6 1.6 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_06083 +0.6 1.2 heat shock protein Hsp20 compare
H281DRAFT_05248 +0.6 0.6 hypothetical protein compare
H281DRAFT_04007 +0.6 3.4 TIGR00255 family protein compare
H281DRAFT_04406 +0.6 1.5 putative RNA-binding protein, YhbY family compare
H281DRAFT_01681 +0.6 1.0 Acyl dehydratase compare
H281DRAFT_04755 +0.6 1.4 transcriptional regulator, LysR family compare
H281DRAFT_03986 +0.6 2.4 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_05885 +0.6 1.6 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_05955 +0.6 1.7 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_02287 +0.6 1.6 PKHD-type hydroxylase compare
H281DRAFT_05737 +0.6 1.7 flagellar transcriptional activator FlhD compare
H281DRAFT_01512 +0.6 1.5 transcriptional regulator, IclR family compare
H281DRAFT_03810 +0.6 1.1 citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family compare
H281DRAFT_03153 +0.6 1.6 two component transcriptional regulator, LuxR family compare
H281DRAFT_05892 +0.6 1.1 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_03278 +0.6 1.0 Threonine dehydrogenase compare
H281DRAFT_01474 +0.6 0.6 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_06453 +0.6 3.3 Protein required for attachment to host cells compare
H281DRAFT_05468 +0.6 1.5 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_04236 +0.6 1.9 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_02195 +0.6 1.2 Protein of unknown function (DUF3185) compare
H281DRAFT_06422 +0.6 1.5 hypothetical protein compare
H281DRAFT_06541 +0.6 2.4 transcriptional regulator, DeoR family compare
H281DRAFT_03996 +0.6 1.8 chorismate mutase (EC 5.4.99.5) compare
H281DRAFT_06190 +0.6 0.7 DNA-binding protein H-NS compare
H281DRAFT_06320 +0.6 1.7 biopolymer transport protein ExbD compare
H281DRAFT_04840 +0.6 3.7 Uncharacterized protein conserved in bacteria compare
H281DRAFT_01311 +0.6 1.0 fructose-bisphosphate aldolase compare
H281DRAFT_03320 +0.6 1.6 Uncharacterized conserved protein compare
H281DRAFT_00384 +0.6 1.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_02856 +0.6 1.1 Protein of unknown function (DUF1488) compare
H281DRAFT_03383 +0.6 1.4 Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family compare
H281DRAFT_00125 +0.6 1.7 Protein of unknown function (DUF2486) compare
H281DRAFT_04787 +0.6 1.4 polysaccharide transporter, PST family compare
H281DRAFT_00820 +0.6 1.5 DNA-binding transcriptional regulator, MerR family compare
H281DRAFT_04473 +0.6 1.6 methyl-accepting chemotaxis protein compare
H281DRAFT_05697 +0.6 2.4 2-haloacid dehalogenase compare
H281DRAFT_06462 +0.6 1.1 hypothetical protein compare
H281DRAFT_00940 +0.6 1.8 psiF repeat-containing protein compare
H281DRAFT_06272 +0.6 0.7 uncharacterized protein compare
H281DRAFT_05887 +0.6 1.5 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03848 +0.6 2.3 MFS transporter, AAHS family, 4-hydroxybenzoate transporter compare
H281DRAFT_03240 +0.6 2.2 pyruvate dehydrogenase (quinone) compare
H281DRAFT_06025 +0.6 2.3 chromate transporter compare
H281DRAFT_01188 +0.5 2.2 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02603 +0.5 2.7 Outer membrane protein (porin) compare
H281DRAFT_06044 +0.5 1.8 Protein of unknown function (DUF2384) compare
H281DRAFT_03372 +0.5 1.4 hypothetical protein compare
H281DRAFT_05778 +0.5 1.1 flagellar motor switch protein FliN/FliY compare
H281DRAFT_04958 +0.5 1.4 glutamate racemase compare
H281DRAFT_06098 +0.5 1.9 transcriptional regulator, RpiR family compare
H281DRAFT_04050 +0.5 1.2 beta-aspartyl-peptidase (threonine type) compare
H281DRAFT_02631 +0.5 3.2 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_04715 +0.5 2.2 hypothetical protein compare
H281DRAFT_04404 +0.5 1.1 GreA/GreB family elongation factor compare
H281DRAFT_05766 +0.5 0.9 flagellar basal-body rod protein FlgF compare
H281DRAFT_04820 +0.5 2.5 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
H281DRAFT_05949 +0.5 0.9 gluconolactonase compare
H281DRAFT_03953 +0.5 1.9 hypothetical protein compare
H281DRAFT_00074 +0.5 1.1 UDP-galactose 4-epimerase compare
H281DRAFT_03432 +0.5 1.8 TupA-like ATPgrasp compare
H281DRAFT_05302 +0.5 1.0 FAD/FMN-containing dehydrogenase compare
H281DRAFT_01607 +0.5 2.4 serine protease, S1-C subfamily, contains C-terminal PDZ domain compare
H281DRAFT_05984 +0.5 1.3 conserved hypothetical protein compare
H281DRAFT_06427 +0.5 2.2 Molecular chaperone IbpA, HSP20 family compare
H281DRAFT_05963 +0.5 2.5 transcriptional regulator, IclR family compare
H281DRAFT_02003 +0.5 1.8 Rhodanese-related sulfurtransferase compare
H281DRAFT_00997 +0.5 1.5 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_02717 +0.5 2.0 hypothetical protein compare
H281DRAFT_02651 +0.5 0.8 transcriptional regulator, MerR family compare
H281DRAFT_03010 +0.5 1.7 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
H281DRAFT_03245 +0.5 1.4 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_05633 +0.5 1.6 hypothetical protein compare
H281DRAFT_05267 +0.5 1.3 3-hydroxypropanoate dehydrogenase compare
H281DRAFT_04535 +0.5 1.1 quaternary ammonium compound-resistance protein SugE compare
H281DRAFT_01061 +0.5 1.8 hypothetical protein compare
H281DRAFT_01033 +0.5 0.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05060 +0.5 1.3 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06510 +0.5 0.8 methyl-accepting chemotaxis protein compare
H281DRAFT_05668 +0.5 1.9 dinuclear metal center protein, YbgI/SA1388 family compare
H281DRAFT_05265 +0.5 1.2 hypothetical protein compare
H281DRAFT_03297 +0.5 0.8 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_01078 +0.5 1.2 dihydroxycyclohexadiene carboxylate dehydrogenase compare
H281DRAFT_01326 +0.5 1.5 formylmethanofuran-tetrahydromethanopterin formyltransferase /formyltransferase/hydrolase complex subunit D compare
H281DRAFT_01347 +0.5 1.1 transcriptional regulator, TetR family compare
H281DRAFT_05110 +0.5 1.6 transcriptional regulator, MarR family compare
H281DRAFT_01142 +0.5 1.2 2,5-furandicarboxylate decarboxylase 2 compare
H281DRAFT_05899 +0.5 1.4 hypothetical protein compare
H281DRAFT_02618 +0.5 1.8 transcriptional regulator, LysR family compare
H281DRAFT_02966 +0.5 1.0 nucleoside-binding protein compare
H281DRAFT_03144 +0.5 2.0 putative phosphoesterase compare
H281DRAFT_03503 +0.5 1.3 transcriptional regulator, GntR family compare
H281DRAFT_04937 +0.5 1.2 MFS transporter, DHA2 family, multidrug resistance protein compare
H281DRAFT_02696 +0.5 1.2 glutathione S-transferase compare
H281DRAFT_02529 +0.5 2.6 shikimate dehydrogenase compare
H281DRAFT_00739 +0.5 2.6 transcriptional regulator, GntR family compare
H281DRAFT_05003 +0.5 1.3 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_01315 +0.5 3.1 probable Rubsico expression protein CbbX compare
H281DRAFT_03961 +0.5 2.6 xanthine dehydrogenase, small subunit (EC 1.17.1.4) (from data) compare
H281DRAFT_06297 +0.5 1.1 L-arabinose-binding protein compare
H281DRAFT_06445 +0.5 0.8 Molybdopterin synthase catalytic subunit compare
H281DRAFT_04421 +0.5 1.7 phosphohistidine phosphatase, SixA compare
H281DRAFT_05741 +0.5 1.1 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_05022 +0.5 1.0 two component transcriptional regulator, LuxR family compare
H281DRAFT_04431 +0.5 1.8 Membrane-bound metallopeptidase compare
H281DRAFT_03155 +0.5 1.6 Protein of unknown function (DUF3311) compare
H281DRAFT_03828 +0.5 1.8 MFS transporter, ACS family, hexuronate transporter compare
H281DRAFT_02718 +0.5 1.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_03869 +0.5 2.3 hypothetical protein compare
H281DRAFT_01086 +0.5 1.2 hypothetical protein compare
H281DRAFT_01006 +0.5 2.7 Fatty acid hydroxylase superfamily protein compare
H281DRAFT_03163 +0.5 1.6 Protein of unknown function (DUF3348) compare
H281DRAFT_00338 +0.5 1.0 Protein of unknown function (DUF2964) compare
H281DRAFT_00091 +0.5 1.4 urea transport system ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source D-Glucose across organisms