Experiment set7IT044 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Protocatechuic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01190 +1.6 2.4 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_00706 +1.5 2.0 outer membrane protein compare
H281DRAFT_01512 +1.5 6.1 transcriptional regulator, IclR family compare
H281DRAFT_06056 +1.5 11.8 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_00240 +1.4 9.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06027 +1.4 10.3 AMP nucleosidase compare
H281DRAFT_02873 +1.3 2.8 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_05983 +1.3 2.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05962 +1.3 1.7 RraA famliy compare
H281DRAFT_01069 +1.3 2.5 Cytosine/adenosine deaminase compare
H281DRAFT_03592 +1.2 2.5 hypothetical protein compare
H281DRAFT_04229 +1.2 8.4 glycerol kinase compare
H281DRAFT_05641 +1.2 4.3 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_00176 +1.1 1.2 outer membrane lipoprotein carrier protein compare
H281DRAFT_01756 +1.1 2.6 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
H281DRAFT_05724 +1.0 4.9 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_05021 +1.0 1.0 Response regulator compare
H281DRAFT_06190 +1.0 1.2 DNA-binding protein H-NS compare
H281DRAFT_03611 +1.0 1.4 hopanoid-associated phosphorylase compare
H281DRAFT_02698 +1.0 3.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03245 +1.0 3.8 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_04228 +1.0 4.9 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_03184 +1.0 1.3 cation diffusion facilitator family transporter compare
H281DRAFT_01881 +1.0 2.6 two-component system, LuxR family, sensor kinase FixL compare
H281DRAFT_06295 +1.0 2.2 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_05159 +0.9 3.2 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_00236 +0.9 4.2 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_06581 +0.9 1.7 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03610 +0.9 2.7 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_02662 +0.9 1.7 Predicted xylanase/chitin deacetylase compare
H281DRAFT_04611 +0.9 1.8 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_06506 +0.9 1.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05643 +0.9 3.9 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_05856 +0.9 3.5 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC compare
H281DRAFT_06545 +0.9 2.5 protein of unknown function (DUF4148) compare
H281DRAFT_04170 +0.9 4.4 multidrug efflux pump compare
H281DRAFT_06346 +0.9 4.3 Predicted deacylase compare
H281DRAFT_01390 +0.9 1.4 hypothetical protein compare
H281DRAFT_00895 +0.9 4.4 trigger factor compare
H281DRAFT_05179 +0.8 2.9 manganese transport protein compare
H281DRAFT_01222 +0.8 1.4 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_01117 +0.8 2.2 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
H281DRAFT_04302 +0.8 1.9 molybdopterin adenylyltransferase compare
H281DRAFT_06296 +0.8 1.7 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04201 +0.8 1.0 O-antigen ligase compare
H281DRAFT_06108 +0.8 2.8 hypothetical protein compare
H281DRAFT_06090 +0.8 2.4 N-ethylmaleimide reductase compare
H281DRAFT_05476 +0.8 1.4 Short-chain dehydrogenase compare
H281DRAFT_04169 +0.8 3.5 outer membrane protein, multidrug efflux system compare
H281DRAFT_02718 +0.8 2.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04482 +0.8 1.8 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_04050 +0.8 1.7 beta-aspartyl-peptidase (threonine type) compare
H281DRAFT_02741 +0.8 1.7 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_06363 +0.8 2.9 hypothetical protein compare
H281DRAFT_00997 +0.8 1.4 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_03796 +0.8 1.3 protein of unknown function (DUF4148) compare
H281DRAFT_00996 +0.8 1.4 ChrR Cupin-like domain-containing protein compare
H281DRAFT_03400 +0.8 1.5 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03192 +0.8 1.6 D-methionine transport system substrate-binding protein compare
H281DRAFT_04171 +0.8 3.7 membrane fusion protein, multidrug efflux system compare
H281DRAFT_02280 +0.8 2.3 hypothetical protein compare
H281DRAFT_05755 +0.8 2.0 flagellar biosynthesis protein FlhG compare
H281DRAFT_03346 +0.8 1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_04473 +0.8 1.7 methyl-accepting chemotaxis protein compare
H281DRAFT_01827 +0.8 1.1 hypothetical protein compare
H281DRAFT_00109 +0.8 2.2 hypothetical protein compare
H281DRAFT_06385 +0.8 1.5 hypothetical protein compare
H281DRAFT_01111 +0.8 0.9 transcriptional regulator, DeoR family compare
H281DRAFT_06422 +0.8 1.1 hypothetical protein compare
H281DRAFT_03313 +0.7 2.0 hypothetical protein compare
H281DRAFT_04314 +0.7 2.8 fumarase, class II compare
H281DRAFT_03383 +0.7 2.7 Aerobic-type carbon monoxide dehydrogenase, small subunit, CoxS/CutS family compare
H281DRAFT_03460 +0.7 1.2 Protein of unknown function (DUF2950) compare
H281DRAFT_03881 +0.7 2.8 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_02832 +0.7 1.3 hypothetical protein compare
H281DRAFT_05314 +0.7 1.9 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_02983 +0.7 2.3 hypothetical protein compare
H281DRAFT_00286 +0.7 1.5 transaldolase compare
H281DRAFT_01675 +0.7 3.4 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03497 +0.7 1.7 transcriptional regulator, DeoR family compare
H281DRAFT_04714 +0.7 1.5 small conductance mechanosensitive channel compare
H281DRAFT_05908 +0.7 1.2 hypothetical protein compare
H281DRAFT_02705 +0.7 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04968 +0.7 1.6 Hemin uptake protein hemP compare
H281DRAFT_05915 +0.7 1.4 hypothetical protein compare
H281DRAFT_05768 +0.7 2.3 flagellar L-ring protein precursor FlgH compare
H281DRAFT_01485 +0.7 2.9 hypothetical protein compare
H281DRAFT_02568 +0.7 1.4 Methyl-accepting chemotaxis protein compare
H281DRAFT_02322 +0.7 2.3 hypothetical protein compare
H281DRAFT_06297 +0.7 0.9 L-arabinose-binding protein compare
H281DRAFT_06025 +0.7 2.8 chromate transporter compare
H281DRAFT_03503 +0.7 1.8 transcriptional regulator, GntR family compare
H281DRAFT_00347 +0.7 1.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_01299 +0.7 1.3 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_02362 +0.7 4.9 carboxylate-amine ligase compare
H281DRAFT_05012 +0.7 1.5 hypothetical protein compare
H281DRAFT_04795 +0.7 3.8 hypothetical protein compare
H281DRAFT_01494 +0.7 3.3 S-formylglutathione hydrolase FrmB compare
H281DRAFT_00806 +0.7 1.8 Membrane transporters of cations and cationic drugs compare
H281DRAFT_01727 +0.7 1.7 Short-chain dehydrogenase compare
H281DRAFT_05646 +0.7 1.6 hypothetical protein compare
H281DRAFT_05993 +0.7 1.1 Kynureninase compare
H281DRAFT_01088 +0.7 1.2 Lactate dehydrogenase compare
H281DRAFT_03443 +0.7 0.9 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05218 +0.7 1.2 LTXXQ motif family protein compare
H281DRAFT_05642 +0.7 1.7 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_02958 +0.7 1.5 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_01201 +0.7 1.3 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_04425 +0.6 1.0 hypothetical protein compare
H281DRAFT_01563 +0.6 4.6 MFS transporter, CP family, cyanate transporter compare
H281DRAFT_01443 +0.6 0.5 RND family efflux transporter, MFP subunit compare
H281DRAFT_04788 +0.6 1.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05122 +0.6 2.4 host factor-I protein compare
H281DRAFT_02756 +0.6 0.6 Cupin domain protein compare
H281DRAFT_06367 +0.6 1.1 pilus assembly protein CpaE compare
H281DRAFT_05899 +0.6 1.3 hypothetical protein compare
H281DRAFT_06238 +0.6 1.0 hypothetical protein compare
H281DRAFT_03089 +0.6 3.0 hypothetical protein compare
H281DRAFT_04601 +0.6 3.1 hypothetical protein compare
H281DRAFT_01108 +0.6 1.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01267 +0.6 1.9 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_01188 +0.6 1.7 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00046 +0.6 1.2 Predicted periplasmic or secreted lipoprotein compare
H281DRAFT_01543 +0.6 1.6 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_01105 +0.6 1.3 transcriptional regulator, AraC family compare
H281DRAFT_00643 +0.6 2.5 3-oxoacyl-[acyl-carrier-protein] reductase compare
H281DRAFT_04275 +0.6 1.3 gluconate kinase, SKI family compare
H281DRAFT_05110 +0.6 1.2 transcriptional regulator, MarR family compare
H281DRAFT_05645 +0.6 2.3 phospholipid transport system substrate-binding protein compare
H281DRAFT_03990 +0.6 2.3 addiction module antidote protein, HigA family compare
H281DRAFT_04981 +0.6 2.9 Protein of unknown function (DUF3563) compare
H281DRAFT_04467 +0.6 4.1 UDP-glucose pyrophosphorylase compare
H281DRAFT_04929 +0.6 0.9 hypothetical protein compare
H281DRAFT_05984 +0.6 1.7 conserved hypothetical protein compare
H281DRAFT_02888 +0.6 1.9 hypothetical protein compare
H281DRAFT_01401 +0.6 1.8 Polyisoprenoid-binding protein YceI compare
H281DRAFT_04269 +0.6 2.5 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_01836 +0.6 1.6 hypothetical protein compare
H281DRAFT_01357 +0.6 3.0 transcriptional regulator, LysR family compare
H281DRAFT_01544 +0.6 1.8 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_06043 +0.6 1.8 hypothetical protein compare
H281DRAFT_03719 +0.6 1.6 Zn-dependent hydrolases, including glyoxylases compare
H281DRAFT_01082 +0.6 2.1 putrescine aminotransferase compare
H281DRAFT_05869 +0.6 1.3 2-iminobutanoate/2-iminopropanoate deaminase compare
H281DRAFT_05246 +0.6 2.3 Predicted membrane protein compare
H281DRAFT_02651 +0.6 0.9 transcriptional regulator, MerR family compare
H281DRAFT_05484 +0.6 2.5 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_03220 +0.6 1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_06000 +0.6 1.8 transcriptional regulator, AraC family compare
H281DRAFT_04390 +0.6 3.9 ATP-binding cassette, subfamily B compare
H281DRAFT_03986 +0.6 1.2 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_05349 +0.6 1.4 hypothetical protein compare
H281DRAFT_05920 +0.6 2.3 transcriptional regulator, LacI family compare
H281DRAFT_05146 +0.6 1.5 methyltransferase, TIGR00027 family compare
H281DRAFT_01093 +0.6 2.6 transcriptional regulator, winged helix family compare
H281DRAFT_03638 +0.6 1.6 Cupin domain-containing protein compare
H281DRAFT_04440 +0.6 1.1 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_03203 +0.6 2.3 hypothetical protein compare
H281DRAFT_04746 +0.6 1.6 D-lactate dehydrogenase compare
H281DRAFT_02287 +0.6 1.3 PKHD-type hydroxylase compare
H281DRAFT_04662 +0.6 2.1 paraquat-inducible protein A compare
H281DRAFT_05649 +0.6 1.4 transcriptional regulator, BolA protein family compare
H281DRAFT_05088 +0.6 1.5 hypothetical protein compare
H281DRAFT_03852 +0.6 2.4 Nitroreductase compare
H281DRAFT_03297 +0.6 0.8 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_02078 +0.6 2.1 protein of unknown function (DUF1840) compare
H281DRAFT_00343 +0.6 2.5 hypothetical protein compare
H281DRAFT_00535 +0.6 1.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD compare
H281DRAFT_05041 +0.6 0.8 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01519 +0.6 1.1 fructuronate reductase compare
H281DRAFT_05183 +0.6 1.3 putrescine transport system permease protein compare
H281DRAFT_01463 +0.6 1.7 Steroid 5-alpha reductase family enzyme compare
H281DRAFT_03898 +0.6 2.2 DUF2300 domain-containing protein YfaQ compare
H281DRAFT_00776 +0.6 1.7 hypothetical protein compare
H281DRAFT_03196 +0.6 2.7 Acyl-CoA dehydrogenase compare
H281DRAFT_05632 +0.6 1.5 hypothetical protein compare
H281DRAFT_06576 +0.6 1.3 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_01584 +0.6 0.8 enamidase compare
H281DRAFT_01366 +0.6 1.7 hypothetical protein compare
H281DRAFT_01053 +0.6 0.6 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_03981 +0.6 1.2 Uncharacterized membrane protein compare
H281DRAFT_00075 +0.5 0.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01614 +0.5 1.0 hypothetical protein compare
H281DRAFT_06541 +0.5 2.9 transcriptional regulator, DeoR family compare
H281DRAFT_01649 +0.5 1.7 transcriptional regulator, LysR family compare
H281DRAFT_03883 +0.5 2.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_01449 +0.5 1.1 RIO kinase 1 compare
H281DRAFT_06430 +0.5 1.3 hypothetical protein compare
H281DRAFT_01503 +0.5 1.7 hypothetical protein compare
H281DRAFT_05909 +0.5 2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_04789 +0.5 1.9 hypothetical protein compare
H281DRAFT_01750 +0.5 1.8 PAS domain S-box-containing protein compare
H281DRAFT_00043 +0.5 1.4 protein of unknown function (DUF3331) compare
H281DRAFT_02546 +0.5 1.2 transcriptional regulator, TetR family compare
H281DRAFT_04406 +0.5 1.3 putative RNA-binding protein, YhbY family compare
H281DRAFT_06098 +0.5 1.0 transcriptional regulator, RpiR family compare
H281DRAFT_05955 +0.5 1.1 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04278 +0.5 2.8 6-phosphogluconate dehydratase compare
H281DRAFT_00282 +0.5 1.2 Protein of unknown function (DUF3311) compare
H281DRAFT_03388 +0.5 3.3 Predicted dithiol-disulfide isomerase, DsbA family compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Protocatechuic Acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Protocatechuic Acid across organisms