Experiment set7IT043 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cerium(III) chloride 0.000195313 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -7.3 -5.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4353 -6.2 -7.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5006 -4.0 -10.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4352 -3.9 -3.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5014 -2.8 -2.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_178 -2.7 -2.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4416 -2.6 -4.2 Tyrosine recombinase XerC compare
Pf6N2E2_5242 -2.4 -3.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4797 -2.3 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5103 -2.3 -2.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5536 -2.2 -2.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2285 -2.2 -2.6 FIG00954079: hypothetical protein compare
Pf6N2E2_2218 -2.2 -4.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4908 -2.2 -9.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3303 -2.1 -6.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3134 -2.1 -1.8 hypothetical protein compare
Pf6N2E2_3351 -2.0 -5.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4418 -2.0 -1.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4369 -1.8 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4372 -1.8 -5.3 FIG00460773: hypothetical protein compare
Pf6N2E2_4162 -1.8 -3.6 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3908 -1.8 -6.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3261 -1.7 -3.5 hypothetical protein compare
Pf6N2E2_2510 -1.7 -4.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5527 -1.7 -2.4 Cold shock protein CspC compare
Pf6N2E2_3461 -1.6 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5001 -1.6 -2.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2127 -1.6 -4.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3607 -1.5 -5.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2646 -1.5 -1.2 FIG00953416: hypothetical protein compare
Pf6N2E2_5428 -1.5 -6.5 DNA recombination and repair protein RecO compare
Pf6N2E2_2586 -1.5 -1.9 Hpt domain protein compare
Pf6N2E2_4206 -1.5 -1.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5794 -1.5 -2.7 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3658 -1.4 -6.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5156 -1.4 -2.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1705 -1.4 -1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1014 -1.3 -2.7 Nitrate/nitrite transporter compare
Pf6N2E2_288 -1.3 -1.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2219 -1.2 -1.6 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2755 -1.2 -2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1545 -1.2 -3.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2106 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_3875 -1.2 -1.9 FIG00953324: hypothetical protein compare
Pf6N2E2_1656 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2487 -1.1 -1.1 FIG00956090: hypothetical protein compare
Pf6N2E2_4886 -1.1 -7.1 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3847 -1.1 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3282 -1.1 -1.8 FIG005080: Possible exported protein compare
Pf6N2E2_2674 -1.1 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_2325 -1.1 -3.8 Recombination protein RecR compare
Pf6N2E2_5720 -1.1 -7.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2022 -1.1 -4.9 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_1082 -1.1 -2.3 CopG protein compare
Pf6N2E2_4181 -1.1 -1.3 Organic hydroperoxide resistance protein compare
Pf6N2E2_1987 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_4072 -1.0 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4074 -1.0 -7.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4706 -1.0 -2.4 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3661 -1.0 -3.3 hypothetical protein compare
Pf6N2E2_3568 -1.0 -2.0 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_1652 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_4454 -1.0 -3.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5150 -1.0 -3.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5226 -1.0 -1.4 FIG00955589: hypothetical protein compare
Pf6N2E2_4204 -1.0 -1.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1032 -1.0 -1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5320 -1.0 -5.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_1606 -1.0 -3.4 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_1673 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1824 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_1774 -1.0 -1.9 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_5714 -0.9 -2.1 Flavoprotein WrbA compare
Pf6N2E2_4075 -0.9 -3.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4187 -0.9 -3.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3828 -0.9 -2.4 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_2424 -0.9 -3.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_453 -0.9 -2.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4197 -0.9 -4.8 DNA recombination and repair protein RecF compare
Pf6N2E2_5155 -0.9 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1089 -0.9 -2.2 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4611 -0.9 -2.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1715 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_89 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_3665 -0.9 -0.9 serine/threonine protein kinase compare
Pf6N2E2_1617 -0.9 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3349 -0.9 -2.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5251 -0.9 -2.4 FIG00954698: hypothetical protein compare
Pf6N2E2_5746 -0.9 -2.0 Cobalamin synthase compare
Pf6N2E2_2496 -0.9 -1.5 FIG00956575: hypothetical protein compare
Pf6N2E2_441 -0.9 -2.2 FIG00958773: hypothetical protein compare
Pf6N2E2_924 -0.8 -2.2 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_4273 -0.8 -3.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5316 -0.8 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2552 -0.8 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5317 -0.8 -6.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_919 -0.8 -1.4 FIG00954373: hypothetical protein compare
Pf6N2E2_43 -0.8 -3.7 Histidine permease YuiF compare
Pf6N2E2_2069 -0.8 -2.2 FIG00953703: hypothetical protein compare
Pf6N2E2_2217 -0.8 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5188 -0.8 -2.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_663 -0.8 -2.8 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_3373 -0.8 -1.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_942 -0.8 -1.4 Mll6465 protein compare
Pf6N2E2_3027 -0.8 -1.3 Baseplate assembly protein V compare
Pf6N2E2_847 -0.8 -2.1 Phosphoribosyl transferase domain protein compare
Pf6N2E2_5633 -0.8 -6.0 Aromatic amino acid transport protein AroP compare
Pf6N2E2_5522 -0.8 -2.2 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_5318 -0.8 -6.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4743 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_4367 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_5207 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4594 -0.8 -2.4 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_2708 -0.8 -2.7 Lactam utilization protein LamB compare
Pf6N2E2_1670 -0.8 -2.6 conserved membrane protein compare
Pf6N2E2_2855 -0.7 -3.0 DGPFAETKE compare
Pf6N2E2_664 -0.7 -1.7 Acetoin catabolism protein X compare
Pf6N2E2_84 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_1464 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_5319 -0.7 -4.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4153 -0.7 -1.0 Sensory box histidine kinase compare
Pf6N2E2_3841 -0.7 -2.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2021 -0.7 -4.3 Excinuclease ABC subunit C compare
Pf6N2E2_2062 -0.7 -2.0 FIG00955561: hypothetical protein compare
Pf6N2E2_833 -0.7 -2.3 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_3033 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_304 -0.7 -2.4 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_4535 -0.7 -2.6 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_3947 -0.7 -0.9 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_1805 -0.7 -2.3 Multidrug resistance protein B compare
Pf6N2E2_1660 -0.7 -1.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_2128 -0.7 -3.0 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2473 -0.7 -1.0 Major outer membrane lipoprotein I compare
Pf6N2E2_1396 -0.7 -1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_3384 -0.7 -2.8 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_1691 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_5219 -0.7 -3.0 FIG140336: TPR domain protein compare
Pf6N2E2_2274 -0.7 -3.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_871 -0.7 -3.4 sensor histidine kinase compare
Pf6N2E2_4342 -0.7 -2.1 Protein phosphatase ImpM compare
Pf6N2E2_4888 -0.7 -5.5 Excinuclease ABC subunit A compare
Pf6N2E2_3264 -0.7 -1.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2013 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_2992 -0.7 -1.6 Regulatory protein RecX compare
Pf6N2E2_3039 -0.7 -3.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_241 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_4073 -0.7 -2.7 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_3191 -0.7 -3.2 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_2065 -0.6 -1.8 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3151 -0.6 -2.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2309 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_2835 -0.6 -1.7 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5727 -0.6 -2.5 FIG00955360: hypothetical protein compare
Pf6N2E2_4477 -0.6 -2.3 Z-ring-associated protein ZapA compare
Pf6N2E2_4517 -0.6 -2.5 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_440 -0.6 -1.9 FIG00954920: hypothetical protein compare
Pf6N2E2_4364 -0.6 -1.7 Protein YicC compare
Pf6N2E2_447 -0.6 -2.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_4993 -0.6 -1.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3839 -0.6 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4063 -0.6 -2.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_1812 -0.6 -1.8 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_3370 -0.6 -4.2 DNA repair protein RecN compare
Pf6N2E2_2371 -0.6 -1.8 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_4205 -0.6 -1.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5972 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_5061 -0.6 -2.3 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf6N2E2_4066 -0.6 -3.6 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_820 -0.6 -2.6 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf6N2E2_1699 -0.6 -1.1 FIG00955832: hypothetical protein compare
Pf6N2E2_2825 -0.6 -2.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2088 -0.6 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4773 -0.6 -0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2340 -0.6 -2.4 Transcriptional regulator, GntR family compare
Pf6N2E2_5679 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_819 -0.6 -1.2 Response regulator compare
Pf6N2E2_2641 -0.6 -3.1 SelT/selW/selH selenoprotein domain compare
Pf6N2E2_2311 -0.6 -3.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_189 -0.6 -1.6 regulatory protein, putative compare
Pf6N2E2_5068 -0.6 -4.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2506 -0.6 -4.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_64 -0.6 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_201 -0.6 -2.4 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
Pf6N2E2_5632 -0.6 -1.3 Aromatic amino acid transport protein AroP compare
Pf6N2E2_3258 -0.6 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_968 -0.6 -1.4 FIG00962395: hypothetical protein compare
Pf6N2E2_5508 -0.6 -0.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_92 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_5928 -0.6 -3.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5252 -0.6 -1.1 FIG00956396: hypothetical protein compare
Pf6N2E2_2310 -0.6 -3.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_579 -0.6 -1.2 FIG00962753: hypothetical protein compare
Pf6N2E2_1745 -0.6 -2.7 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_3966 -0.6 -2.5 Acetyltransferase, GNAT family (EC 2.3.1.-) compare
Pf6N2E2_5877 -0.6 -1.7 Phosphohistidine phosphatase SixA compare
Pf6N2E2_1189 -0.6 -2.3 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_5738 -0.5 -2.9 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_5392 -0.5 -2.1 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_5337 -0.5 -1.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2752 -0.5 -3.2 Exported zinc metalloprotease YfgC precursor compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Cerium(III) chloride across organisms