Experiment set7IT043 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Dodecandioic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02008 +2.9 20.7 phosphocarrier protein compare
H281DRAFT_02007 +2.8 24.1 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_06056 +2.5 18.1 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01927 +2.3 20.2 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_00240 +2.1 12.1 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_04369 +1.7 5.8 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_05962 +1.7 2.3 RraA famliy compare
H281DRAFT_05108 +1.7 10.1 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01632 +1.6 13.2 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_03798 +1.5 3.4 NitT/TauT family transport system permease protein compare
H281DRAFT_05109 +1.5 10.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05561 +1.5 6.9 transcriptional regulator, TetR family compare
H281DRAFT_00236 +1.5 5.1 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_04623 +1.4 4.1 transcriptional regulator, TetR family compare
H281DRAFT_01042 +1.3 2.1 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_02643 +1.3 2.1 hypothetical protein compare
H281DRAFT_04368 +1.3 8.0 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_04933 +1.2 2.1 Nitroreductase compare
H281DRAFT_05641 +1.2 5.4 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_03611 +1.1 1.5 hopanoid-associated phosphorylase compare
H281DRAFT_00856 +1.1 2.1 2-keto-3-deoxygluconate kinase compare
H281DRAFT_00997 +1.1 1.8 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_03069 +1.0 1.6 Uncharacterized conserved protein compare
H281DRAFT_03619 +1.0 4.4 dihydroflavonol-4-reductase compare
H281DRAFT_02231 +1.0 1.5 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_05645 +1.0 5.1 phospholipid transport system substrate-binding protein compare
H281DRAFT_05632 +1.0 1.7 hypothetical protein compare
H281DRAFT_01919 +1.0 3.1 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_06477 +1.0 2.6 transcriptional regulator, AraC family compare
H281DRAFT_06046 +1.0 1.4 serine/threonine protein phosphatase 1 compare
H281DRAFT_04323 +1.0 2.1 Branched-chain amino acid transport protein compare
H281DRAFT_00888 +1.0 2.4 phytoene synthase compare
H281DRAFT_01590 +0.9 1.8 hypothetical protein compare
H281DRAFT_02791 +0.9 2.0 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01025 +0.9 1.3 transcriptional regulator, MarR family compare
H281DRAFT_00248 +0.9 1.4 hypothetical protein compare
H281DRAFT_00728 +0.9 2.5 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_02443 +0.9 1.4 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_01052 +0.9 1.6 hypothetical protein compare
H281DRAFT_04150 +0.9 2.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00996 +0.9 1.5 ChrR Cupin-like domain-containing protein compare
H281DRAFT_04302 +0.9 1.3 molybdopterin adenylyltransferase compare
H281DRAFT_02931 +0.9 3.0 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_06170 +0.8 2.6 hypothetical protein compare
H281DRAFT_06194 +0.8 2.4 Proteolipid membrane potential modulator compare
H281DRAFT_01033 +0.8 1.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04226 +0.8 1.2 hypothetical protein compare
H281DRAFT_05625 +0.8 1.6 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_06320 +0.8 2.8 biopolymer transport protein ExbD compare
H281DRAFT_06285 +0.8 2.0 3-dehydroquinate dehydratase compare
H281DRAFT_01717 +0.8 2.0 L-alanine-DL-glutamate epimerase compare
H281DRAFT_03266 +0.8 0.9 Nicotinamidase-related amidase compare
H281DRAFT_04999 +0.8 1.6 type III secretion protein HrpB7 compare
H281DRAFT_05314 +0.8 1.6 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_06531 +0.8 1.3 cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase compare
H281DRAFT_06163 +0.8 1.0 hypothetical protein compare
H281DRAFT_06462 +0.8 1.3 hypothetical protein compare
H281DRAFT_04981 +0.8 2.2 Protein of unknown function (DUF3563) compare
H281DRAFT_00819 +0.8 0.9 competence protein ComEA compare
H281DRAFT_02485 +0.8 2.5 gamma-glutamyltranspeptidase / glutathione hydrolase compare
H281DRAFT_00998 +0.8 1.5 outer membrane protein, multidrug efflux system compare
H281DRAFT_03576 +0.8 1.5 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_06296 +0.8 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00405 +0.8 1.0 Predicted small secreted protein compare
H281DRAFT_04539 +0.8 2.1 Uncharacterized conserved protein, DUF924 family compare
H281DRAFT_02903 +0.8 1.9 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_02720 +0.8 1.2 GAF domain-containing protein compare
H281DRAFT_05324 +0.8 1.6 tripartite ATP-independent transporter solute receptor, DctP family compare
H281DRAFT_02873 +0.8 1.3 ketopantoate reductase (EC 1.1.1.169) compare
H281DRAFT_01256 +0.7 1.9 hypothetical protein compare
H281DRAFT_05012 +0.7 1.7 hypothetical protein compare
H281DRAFT_01377 +0.7 1.2 hypothetical protein compare
H281DRAFT_01767 +0.7 1.1 hypothetical protein compare
H281DRAFT_03443 +0.7 1.4 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_04470 +0.7 2.0 adenosylhomocysteine nucleosidase compare
H281DRAFT_06346 +0.7 1.2 Predicted deacylase compare
H281DRAFT_04004 +0.7 2.5 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_04792 +0.7 2.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03502 +0.7 1.5 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_04171 +0.7 3.1 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01721 +0.7 1.6 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_02955 +0.7 1.4 NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family compare
H281DRAFT_01709 +0.7 2.2 hypothetical protein compare
H281DRAFT_02230 +0.7 1.9 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_05643 +0.7 3.1 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_00794 +0.7 1.2 hypothetical protein compare
H281DRAFT_04056 +0.7 4.1 CDP-4-dehydro-6-deoxyglucose reductase compare
H281DRAFT_05705 +0.7 0.8 hypothetical protein compare
H281DRAFT_06499 +0.7 2.9 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_00408 +0.7 2.1 Protein of unknown function (DUF1328) compare
H281DRAFT_06327 +0.7 1.6 2-methylcitrate synthase compare
H281DRAFT_01287 +0.7 1.0 mxaK protein compare
H281DRAFT_04624 +0.7 4.7 hypothetical protein compare
H281DRAFT_01443 +0.7 0.6 RND family efflux transporter, MFP subunit compare
H281DRAFT_01117 +0.7 3.5 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
H281DRAFT_01108 +0.7 0.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04883 +0.7 1.1 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_05916 +0.7 1.9 hypothetical protein compare
H281DRAFT_00729 +0.7 2.0 O-antigen ligase like membrane protein compare
H281DRAFT_05144 +0.7 1.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_03599 +0.7 1.4 Putative zinc-finger compare
H281DRAFT_00242 +0.7 3.5 hypothetical protein compare
H281DRAFT_03637 +0.7 1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06484 +0.7 1.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_01231 +0.7 2.6 hypothetical protein compare
H281DRAFT_06581 +0.7 1.5 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03620 +0.7 1.8 acylphosphatase compare
H281DRAFT_05890 +0.7 1.9 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_05399 +0.7 1.8 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_00348 +0.7 0.6 membrane fusion protein, multidrug efflux system compare
H281DRAFT_06037 +0.7 1.1 molybdate transport system substrate-binding protein compare
H281DRAFT_04482 +0.7 1.2 NAD(P)H dehydrogenase (quinone) compare
H281DRAFT_05864 +0.7 1.8 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_01065 +0.7 1.6 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_04536 +0.7 2.1 protein of unknown function (DUF4126) compare
H281DRAFT_03306 +0.7 1.5 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01093 +0.7 2.1 transcriptional regulator, winged helix family compare
H281DRAFT_00769 +0.7 1.5 hypothetical protein compare
H281DRAFT_06237 +0.7 1.7 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_05537 +0.7 0.9 transcriptional regulator, IclR family compare
H281DRAFT_05880 +0.6 1.1 Aspartate/methionine/tyrosine aminotransferase compare
H281DRAFT_02952 +0.6 1.8 fructuronate reductase compare
H281DRAFT_03335 +0.6 1.7 transcriptional regulator, LysR family compare
H281DRAFT_04790 +0.6 2.1 hypothetical protein compare
H281DRAFT_00295 +0.6 4.2 transcriptional regulator, TetR family compare
H281DRAFT_04309 +0.6 3.5 transcriptional regulator, ArsR family compare
H281DRAFT_00654 +0.6 1.7 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06168 +0.6 1.4 hypothetical protein compare
H281DRAFT_06108 +0.6 1.7 hypothetical protein compare
H281DRAFT_01188 +0.6 1.9 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02667 +0.6 2.2 Outer membrane protein (porin) compare
H281DRAFT_05656 +0.6 1.4 multiple antibiotic resistance protein compare
H281DRAFT_02653 +0.6 1.4 transcriptional regulator, LysR family compare
H281DRAFT_04714 +0.6 1.7 small conductance mechanosensitive channel compare
H281DRAFT_05476 +0.6 1.7 Short-chain dehydrogenase compare
H281DRAFT_05389 +0.6 1.0 protein of unknown function (DUF3331) compare
H281DRAFT_02747 +0.6 1.5 hypothetical protein compare
H281DRAFT_01681 +0.6 1.2 Acyl dehydratase compare
H281DRAFT_00254 +0.6 4.4 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_01190 +0.6 1.0 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_02183 +0.6 1.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01105 +0.6 0.8 transcriptional regulator, AraC family compare
H281DRAFT_01649 +0.6 2.1 transcriptional regulator, LysR family compare
H281DRAFT_06367 +0.6 1.0 pilus assembly protein CpaE compare
H281DRAFT_04433 +0.6 1.7 Undecaprenyl-diphosphatase compare
H281DRAFT_03749 +0.6 0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04691 +0.6 4.8 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_06190 +0.6 0.6 DNA-binding protein H-NS compare
H281DRAFT_03496 +0.6 1.8 hypothetical protein compare
H281DRAFT_01751 +0.6 1.9 Heme oxygenase compare
H281DRAFT_06338 +0.6 1.5 2-haloacid dehalogenase compare
H281DRAFT_01210 +0.6 1.3 Protein of unknown function (DUF1488) compare
H281DRAFT_01931 +0.6 1.6 UPF0042 nucleotide-binding protein compare
H281DRAFT_00668 +0.6 2.8 tagaturonate reductase compare
H281DRAFT_01069 +0.6 0.5 Cytosine/adenosine deaminase compare
H281DRAFT_05218 +0.6 1.8 LTXXQ motif family protein compare
H281DRAFT_03027 +0.6 2.4 phosphonopyruvate decarboxylase compare
H281DRAFT_05943 +0.6 0.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_02195 +0.6 1.3 Protein of unknown function (DUF3185) compare
H281DRAFT_03451 +0.6 1.9 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_00812 +0.6 0.7 molybdopterin molybdotransferase compare
H281DRAFT_01002 +0.6 0.9 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_01200 +0.6 1.4 short chain enoyl-CoA hydratase (EC 4.2.1.17) compare
H281DRAFT_06536 +0.6 1.6 rare lipoprotein A compare
H281DRAFT_06087 +0.6 2.4 Uncharacterized membrane protein compare
H281DRAFT_06459 +0.6 1.5 flagellar motor switch protein FliG compare
H281DRAFT_01584 +0.6 0.9 enamidase compare
H281DRAFT_04170 +0.6 3.3 multidrug efflux pump compare
H281DRAFT_03274 +0.6 0.9 hypothetical protein compare
H281DRAFT_03411 +0.6 1.8 hypothetical protein compare
H281DRAFT_04492 +0.6 4.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05000 +0.6 1.2 ATP synthase in type III secretion protein N compare
H281DRAFT_06301 +0.6 2.8 L-arabinonolactonase (EC 3.1.1.15) compare
H281DRAFT_02292 +0.6 1.3 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05852 +0.6 3.4 transcriptional regulator, TetR family compare
H281DRAFT_04932 +0.6 1.4 MbtH protein compare
H281DRAFT_00163 +0.6 3.2 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_01030 +0.6 1.6 peptide/nickel transport system substrate-binding protein compare
H281DRAFT_04739 +0.6 1.7 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_04754 +0.6 1.4 xanthine dehydrogenase accessory protein XdhC compare
H281DRAFT_03400 +0.6 1.0 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_00041 +0.6 1.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_02735 +0.6 1.8 AraC family transcriptional regulator, activator of mtrCDE compare
H281DRAFT_05722 +0.6 2.9 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) (from data) compare
H281DRAFT_01974 +0.6 1.5 Lipid A 3-O-deacylase (PagL) compare
H281DRAFT_02830 +0.6 1.2 hypothetical protein compare
H281DRAFT_00977 +0.6 1.6 hypothetical protein compare
H281DRAFT_02985 +0.6 1.2 copper chaperone compare
H281DRAFT_03034 +0.6 1.6 xanthine dehydrogenase YagT iron-sulfur-binding subunit compare
H281DRAFT_00282 +0.6 1.3 Protein of unknown function (DUF3311) compare
H281DRAFT_02474 +0.6 1.3 electron transfer flavoprotein beta subunit compare
H281DRAFT_03042 +0.6 0.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_02944 +0.6 1.3 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_03783 +0.6 1.6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
H281DRAFT_04662 +0.6 1.9 paraquat-inducible protein A compare
H281DRAFT_00333 +0.6 1.6 L-ascorbate metabolism protein UlaG, beta-lactamase superfamily compare
H281DRAFT_00156 +0.6 2.7 Outer membrane protein OmpA compare
H281DRAFT_05936 +0.6 1.4 hypothetical protein compare
H281DRAFT_03196 +0.6 2.5 Acyl-CoA dehydrogenase compare
H281DRAFT_06341 +0.6 1.8 glyoxylate/hydroxypyruvate reductase A compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Dodecandioic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Dodecandioic acid across organisms