Experiment set7IT042 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cerium(III) chloride 0.000195313 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4353 -7.6 -5.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2129 -4.6 -6.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4416 -4.0 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_5242 -3.8 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4162 -3.7 -3.6 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4352 -3.6 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5006 -3.1 -8.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3351 -2.7 -5.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4369 -2.7 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3282 -2.6 -2.5 FIG005080: Possible exported protein compare
Pf6N2E2_4908 -2.6 -7.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3264 -2.6 -3.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5527 -2.5 -2.9 Cold shock protein CspC compare
Pf6N2E2_5252 -2.2 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_3908 -2.0 -7.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3460 -2.0 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4418 -2.0 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5014 -1.9 -2.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4072 -1.9 -5.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2218 -1.8 -4.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2127 -1.7 -5.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3607 -1.6 -6.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5428 -1.6 -5.0 DNA recombination and repair protein RecO compare
Pf6N2E2_4886 -1.5 -9.5 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4204 -1.5 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3261 -1.5 -3.7 hypothetical protein compare
Pf6N2E2_3303 -1.5 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4372 -1.5 -4.8 FIG00460773: hypothetical protein compare
Pf6N2E2_2646 -1.5 -1.2 FIG00953416: hypothetical protein compare
Pf6N2E2_420 -1.5 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4638 -1.4 -3.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5536 -1.4 -2.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4273 -1.4 -6.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5155 -1.4 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4743 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_737 -1.3 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5508 -1.3 -1.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4205 -1.3 -3.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2325 -1.3 -4.7 Recombination protein RecR compare
Pf6N2E2_5261 -1.3 -1.4 FIG00956983: hypothetical protein compare
Pf6N2E2_3658 -1.3 -4.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3841 -1.3 -3.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3661 -1.2 -4.0 hypothetical protein compare
Pf6N2E2_5943 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_5207 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_6140 -1.2 -1.2 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4454 -1.2 -4.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2088 -1.2 -2.6 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2755 -1.2 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3461 -1.2 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_43 -1.2 -3.9 Histidine permease YuiF compare
Pf6N2E2_384 -1.2 -2.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5103 -1.1 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4499 -1.1 -2.6 protein of unknown function DUF86 compare
Pf6N2E2_945 -1.1 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_133 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_16 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_1502 -1.1 -2.6 Two-component system regulatory protein compare
Pf6N2E2_4074 -1.1 -7.6 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4197 -1.1 -5.7 DNA recombination and repair protein RecF compare
Pf6N2E2_5150 -1.1 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3588 -1.1 -3.3 hypothetical protein compare
Pf6N2E2_2022 -1.1 -4.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5720 -1.1 -8.0 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2320 -1.1 -2.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4181 -1.0 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_5321 -1.0 -6.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2473 -1.0 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_1089 -1.0 -2.3 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_99 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_5677 -1.0 -1.4 Carbon storage regulator compare
Pf6N2E2_5319 -1.0 -5.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_1140 -1.0 -1.9 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_1691 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_4307 -1.0 -2.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_5633 -1.0 -7.8 Aromatic amino acid transport protein AroP compare
Pf6N2E2_939 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_4601 -1.0 -2.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4073 -0.9 -4.0 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_5337 -0.9 -3.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_142 -0.9 -3.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2708 -0.9 -3.9 Lactam utilization protein LamB compare
Pf6N2E2_2139 -0.9 -2.3 Paraquat-inducible protein A compare
Pf6N2E2_5705 -0.9 -1.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4773 -0.9 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_122 -0.9 -2.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_3373 -0.9 -2.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_490 -0.9 -2.5 PhaK-like protein compare
Pf6N2E2_3074 -0.9 -1.5 FIG00960973: hypothetical protein compare
Pf6N2E2_2313 -0.9 -2.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5613 -0.9 -1.9 FIG00953674: hypothetical protein compare
Pf6N2E2_5316 -0.9 -1.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2010 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_2438 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_4803 -0.8 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2510 -0.8 -3.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2217 -0.8 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2508 -0.8 -3.1 hypothetical protein compare
Pf6N2E2_302 -0.8 -2.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_746 -0.8 -1.5 FIG00958097: hypothetical protein compare
Pf6N2E2_1805 -0.8 -3.0 Multidrug resistance protein B compare
Pf6N2E2_4188 -0.8 -1.4 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3039 -0.8 -4.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3696 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_33 -0.8 -2.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5944 -0.8 -2.7 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_927 -0.8 -2.6 (AJ250023) putative polyketide synthase compare
Pf6N2E2_4066 -0.8 -3.9 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_2967 -0.8 -1.1 Cold shock protein CspA compare
Pf6N2E2_5317 -0.8 -5.4 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5728 -0.8 -2.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5219 -0.8 -3.8 FIG140336: TPR domain protein compare
Pf6N2E2_4063 -0.7 -2.2 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_1896 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_3778 -0.7 -1.3 FIG00954300: hypothetical protein compare
Pf6N2E2_2992 -0.7 -2.4 Regulatory protein RecX compare
Pf6N2E2_5318 -0.7 -6.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_2605 -0.7 -3.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5584 -0.7 -2.0 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2513 -0.7 -2.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1745 -0.7 -3.4 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_2121 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_5320 -0.7 -3.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4579 -0.7 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4612 -0.7 -2.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2080 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_2855 -0.7 -2.8 DGPFAETKE compare
Pf6N2E2_304 -0.7 -2.3 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_4974 -0.7 -4.2 DedA protein compare
Pf6N2E2_1169 -0.7 -1.7 TnpR protein compare
Pf6N2E2_1545 -0.7 -2.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5748 -0.7 -1.9 Transcriptional activator protein LuxR compare
Pf6N2E2_2003 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_3656 -0.7 -3.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_339 -0.7 -1.3 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2064 -0.7 -2.3 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_156 -0.7 -1.0 Carbon storage regulator compare
Pf6N2E2_1490 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_2189 -0.7 -2.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2106 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_1625 -0.7 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2201 -0.7 -2.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_4551 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_1696 -0.7 -1.8 Alkanesulfonates-binding protein compare
Pf6N2E2_2444 -0.7 -2.6 Glutathione peroxidase family protein compare
Pf6N2E2_1839 -0.7 -2.2 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_3516 -0.7 -0.9 Probable transmembrane protein compare
Pf6N2E2_3293 -0.7 -1.8 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_338 -0.7 -1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_4684 -0.7 -3.0 hypothetical protein compare
Pf6N2E2_1434 -0.7 -1.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_723 -0.7 -1.8 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_5531 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_75 -0.6 -2.2 Colicin V production protein compare
Pf6N2E2_3258 -0.6 -2.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5727 -0.6 -3.1 FIG00955360: hypothetical protein compare
Pf6N2E2_6057 -0.6 -1.6 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2007 -0.6 -1.5 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_2483 -0.6 -1.5 Deoxyribonuclease TatD compare
Pf6N2E2_2311 -0.6 -3.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3876 -0.6 -2.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3762 -0.6 -2.9 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2310 -0.6 -3.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5668 -0.6 -2.4 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_4467 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_5843 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_2518 -0.6 -1.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1352 -0.6 -1.2 Cation transport ATPase compare
Pf6N2E2_5068 -0.6 -3.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3534 -0.6 -1.0 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_955 -0.6 -1.1 FIG00953508: hypothetical protein compare
Pf6N2E2_241 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_5605 -0.6 -2.0 FxsA protein compare
Pf6N2E2_5755 -0.6 -2.0 FIG00956435: hypothetical protein compare
Pf6N2E2_2261 -0.6 -2.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_3544 -0.6 -2.8 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf6N2E2_3190 -0.6 -2.0 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_2021 -0.6 -3.1 Excinuclease ABC subunit C compare
Pf6N2E2_4150 -0.6 -2.3 probable exported protein YPO0432 compare
Pf6N2E2_2586 -0.6 -0.8 Hpt domain protein compare
Pf6N2E2_3349 -0.6 -1.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_855 -0.6 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_4888 -0.6 -4.9 Excinuclease ABC subunit A compare
Pf6N2E2_4075 -0.6 -2.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2126 -0.6 -2.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3201 -0.6 -1.9 Transcriptional regulator, MerR family compare
Pf6N2E2_3829 -0.6 -1.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2277 -0.6 -1.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2424 -0.6 -1.3 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_3842 -0.6 -2.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2266 -0.6 -2.0 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_447 -0.6 -1.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_1842 -0.6 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_4168 -0.6 -2.8 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_2065 -0.6 -1.3 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3641 -0.6 -1.7 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2062 -0.6 -1.0 FIG00955561: hypothetical protein compare
Pf6N2E2_2693 -0.6 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5768 -0.6 -1.7 DNA recombination-dependent growth factor C compare
Pf6N2E2_5069 -0.6 -2.3 putative Cytochrome bd2, subunit II compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Cerium(III) chloride across organisms