Experiment set7IT042 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cerium(III) chloride 0.000195313 M

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3667 +5.1 7.7 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1056 +4.0 6.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2465 +1.7 6.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3666 +1.4 6.3 InaA protein compare
Pf6N2E2_4541 +1.2 2.5 hypothetical protein compare
Pf6N2E2_3875 +1.0 2.8 FIG00953324: hypothetical protein compare
Pf6N2E2_2447 +1.0 5.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3475 +1.0 2.2 hypothetical protein compare
Pf6N2E2_204 +0.9 1.6 hypothetical protein compare
Pf6N2E2_2561 +0.9 3.0 FIG00955434: hypothetical protein compare
Pf6N2E2_2822 +0.9 4.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_4305 +0.8 1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_3198 +0.8 1.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1162 +0.8 2.0 Transmembrane amino acid efflux protein compare
Pf6N2E2_4059 +0.8 1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_6045 +0.8 1.7 hypothetical protein compare
Pf6N2E2_37 +0.8 1.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_919 +0.7 2.2 FIG00954373: hypothetical protein compare
Pf6N2E2_1215 +0.7 2.0 probable membrane protein YPO2362 compare
Pf6N2E2_987 +0.7 1.9 hypothetical protein compare
Pf6N2E2_3206 +0.7 1.1 hypothetical protein compare
Pf6N2E2_3325 +0.7 2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_3183 +0.7 2.6 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_4963 +0.7 2.1 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_6090 +0.7 1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_350 +0.7 2.1 Gfa-like protein compare
Pf6N2E2_4160 +0.7 1.3 Cytochrome c5 compare
Pf6N2E2_2519 +0.7 1.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_952 +0.7 2.7 putative exported protein compare
Pf6N2E2_4678 +0.7 1.0 hypothetical protein compare
Pf6N2E2_2580 +0.7 1.6 Flagellar biosynthesis protein FliP compare
Pf6N2E2_5986 +0.7 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2292 +0.7 1.9 Universal stress protein family COG0589 compare
Pf6N2E2_2200 +0.7 0.8 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3429 +0.7 2.7 hypothetical protein compare
Pf6N2E2_1213 +0.7 2.3 hypothetical protein compare
Pf6N2E2_4052 +0.6 1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_3723 +0.6 2.6 FIG022199: FAD-binding protein compare
Pf6N2E2_1396 +0.6 1.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_2503 +0.6 1.2 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_114 +0.6 2.2 Polysaccharide biosynthesis protein compare
Pf6N2E2_4415 +0.6 2.1 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_2219 +0.6 1.3 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_1014 +0.6 1.4 Nitrate/nitrite transporter compare
Pf6N2E2_2312 +0.6 1.5 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_1009 +0.6 1.7 Inositol transport system permease protein compare
Pf6N2E2_4969 +0.6 1.2 hypothetical protein compare
Pf6N2E2_3947 +0.6 1.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_349 +0.6 2.4 hypothetical protein compare
Pf6N2E2_2788 +0.6 1.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_1984 +0.6 2.6 probable exported protein STY4558 compare
Pf6N2E2_1248 +0.6 1.8 MutT/nudix family protein compare
Pf6N2E2_2285 +0.6 0.8 FIG00954079: hypothetical protein compare
Pf6N2E2_5499 +0.6 1.0 hypothetical protein compare
Pf6N2E2_2225 +0.5 1.9 FIG00953489: hypothetical protein compare
Pf6N2E2_2536 +0.5 0.8 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5496 +0.5 2.2 FIG00953991: hypothetical protein compare
Pf6N2E2_902 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3004 +0.5 1.4 Prophage baseplate assembly protein V compare
Pf6N2E2_1870 +0.5 1.4 hypothetical protein compare
Pf6N2E2_5967 +0.5 1.2 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_28 +0.5 1.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2488 +0.5 1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3088 +0.5 1.0 hypothetical protein compare
Pf6N2E2_64 +0.5 2.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_6046 +0.5 1.3 hypothetical protein compare
Pf6N2E2_172 +0.5 1.6 FIG00953292: hypothetical protein compare
Pf6N2E2_1603 +0.5 1.6 hypothetical protein compare
Pf6N2E2_264 +0.5 2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5991 +0.5 1.7 proteinase inhibitor compare
Pf6N2E2_5156 +0.5 1.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_77 +0.5 2.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4397 +0.5 2.2 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_623 +0.5 1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_3443 +0.5 2.4 Sulfate permease compare
Pf6N2E2_3226 +0.5 1.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1315 +0.5 1.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_6079 +0.5 2.6 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_546 +0.5 1.2 FIG00966904: hypothetical protein compare
Pf6N2E2_1548 +0.5 1.1 Lactoylglutathione lyase compare
Pf6N2E2_6038 +0.5 1.3 hypothetical protein compare
Pf6N2E2_4570 +0.5 1.7 Cation/multidrug efflux pump compare
Pf6N2E2_2999 +0.5 1.7 probable tail fiber assembly protein compare
Pf6N2E2_909 +0.5 2.6 VrlR-like protein compare
Pf6N2E2_6031 +0.5 1.4 hypothetical protein compare
Pf6N2E2_332 +0.5 2.1 putative nucleoside-diphosphate-sugar epimerase compare
Pf6N2E2_888 +0.5 1.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5571 +0.5 1.0 hypothetical protein compare
Pf6N2E2_813 +0.5 1.6 Response regulator compare
Pf6N2E2_1734 +0.5 2.3 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf6N2E2_1711 +0.5 2.3 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9) compare
Pf6N2E2_1875 +0.5 1.0 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3665 +0.5 0.6 serine/threonine protein kinase compare
Pf6N2E2_2722 +0.5 2.1 FIG00954807: hypothetical protein compare
Pf6N2E2_1506 +0.5 1.4 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_1135 +0.5 2.1 COGs COG3558 compare
Pf6N2E2_295 +0.5 1.5 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_4640 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1633 +0.5 1.9 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_81 +0.4 1.1 hypothetical protein compare
Pf6N2E2_1682 +0.4 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_701 +0.4 1.8 Heme d1 biosynthesis protein NirD / Heme d1 biosynthesis protein NirL compare
Pf6N2E2_4994 +0.4 2.0 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_5134 +0.4 1.1 FIG060329: MOSC domain protein compare
Pf6N2E2_1731 +0.4 3.1 Transcriptional regulator, LysR family compare
Pf6N2E2_5545 +0.4 1.6 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2413 +0.4 0.7 FIG074102: hypothetical protein compare
Pf6N2E2_4984 +0.4 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1157 +0.4 1.8 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_2986 +0.4 1.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_2675 +0.4 0.7 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_615 +0.4 1.6 FIG00957600: hypothetical protein compare
Pf6N2E2_319 +0.4 1.8 DUF1850 domain-containing protein compare
Pf6N2E2_6074 +0.4 1.6 Redox-sensitive transcriptional activator SoxR compare
Pf6N2E2_1492 +0.4 0.8 No significant database matches compare
Pf6N2E2_3982 +0.4 1.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_3027 +0.4 0.9 Baseplate assembly protein V compare
Pf6N2E2_1476 +0.4 1.4 (AF179595) Vco33 compare
Pf6N2E2_425 +0.4 1.8 FIG00957304: hypothetical protein compare
Pf6N2E2_1249 +0.4 1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_1712 +0.4 1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2425 +0.4 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1083 +0.4 1.1 hypothetical protein compare
Pf6N2E2_5241 +0.4 1.4 Aminopeptidase N compare
Pf6N2E2_3902 +0.4 1.9 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_2375 +0.4 1.3 Response regulator NasT compare
Pf6N2E2_905 +0.4 2.1 FIG00962753: hypothetical protein compare
Pf6N2E2_692 +0.4 1.9 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_328 +0.4 1.2 hypothetical protein compare
Pf6N2E2_5947 +0.4 2.2 FIG146278: Maf/YceF/YhdE family protein compare
Pf6N2E2_1754 +0.4 1.4 FIG00731982: hypothetical protein compare
Pf6N2E2_2123 +0.4 1.5 hypothetical protein compare
Pf6N2E2_434 +0.4 1.2 hypothetical protein compare
Pf6N2E2_3253 +0.4 2.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_1516 +0.4 1.6 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1615 +0.4 2.2 Aldo-keto reductase compare
Pf6N2E2_2467 +0.4 1.6 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_724 +0.4 0.9 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_2207 +0.4 1.7 cytochrome b(561) compare
Pf6N2E2_4391 +0.4 2.2 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_1526 +0.4 1.9 MgtC family compare
Pf6N2E2_3663 +0.4 2.5 Glycosyl transferase compare
Pf6N2E2_5057 +0.4 1.2 hypothetical protein compare
Pf6N2E2_5806 +0.4 1.0 hypothetical protein compare
Pf6N2E2_1741 +0.4 1.9 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_2933 +0.4 1.3 hypothetical protein compare
Pf6N2E2_3986 +0.4 2.2 PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN compare
Pf6N2E2_3412 +0.4 1.6 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_3883 +0.4 1.9 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf6N2E2_2396 +0.4 1.6 Sensor histidine kinase compare
Pf6N2E2_3171 +0.4 0.7 hypothetical protein compare
Pf6N2E2_4540 +0.4 0.9 hypothetical protein compare
Pf6N2E2_2810 +0.4 1.8 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_1759 +0.4 1.2 uncharacterized domain 1 compare
Pf6N2E2_5024 +0.4 1.5 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_3612 +0.4 0.5 HflK protein compare
Pf6N2E2_479 +0.4 1.7 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_3827 +0.4 2.3 FIG00955429: hypothetical protein compare
Pf6N2E2_869 +0.4 1.4 FMN oxidoreductase compare
Pf6N2E2_3569 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1210 +0.4 2.1 putative aminotransferase compare
Pf6N2E2_3870 +0.4 1.2 hypothetical protein compare
Pf6N2E2_695 +0.4 1.6 Nitrite reductase associated c-type cytochorome NirN compare
Pf6N2E2_798 +0.4 1.8 Ku domain protein compare
Pf6N2E2_1325 +0.4 1.2 FIG00954773: hypothetical protein compare
Pf6N2E2_2660 +0.4 2.1 Transcriptional regulators, LysR family compare
Pf6N2E2_159 +0.4 1.4 DNA damage resistance protein (from data) compare
Pf6N2E2_2303 +0.4 2.1 Aerotaxis receptor Aer compare
Pf6N2E2_2597 +0.4 2.8 Flagellar regulatory protein FleQ compare
Pf6N2E2_6059 +0.4 1.2 FIG008443: hypothetical protein compare
Pf6N2E2_4455 +0.4 1.6 Glutamate transport ATP-binding protein compare
Pf6N2E2_3597 +0.4 1.5 hypothetical protein compare
Pf6N2E2_3219 +0.4 1.0 hypothetical protein compare
Pf6N2E2_3589 +0.4 0.9 Lysine decarboxylase family compare
Pf6N2E2_896 +0.4 1.4 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_4044 +0.4 1.8 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_2223 +0.4 1.2 hypothetical protein compare
Pf6N2E2_2023 +0.4 2.0 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1299 +0.4 1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_4548 +0.4 1.2 hypothetical protein compare
Pf6N2E2_720 +0.3 1.9 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_4537 +0.3 0.6 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_2827 +0.3 0.6 hypothetical protein compare
Pf6N2E2_3555 +0.3 2.0 Tabtoxin resistance protein compare
Pf6N2E2_193 +0.3 1.0 hypothetical protein compare
Pf6N2E2_567 +0.3 2.0 Universal stress protein family 7 compare
Pf6N2E2_2012 +0.3 1.2 hypothetical protein compare
Pf6N2E2_2083 +0.3 1.3 hypothetical protein compare
Pf6N2E2_5158 +0.3 1.7 FIG00954153: hypothetical protein compare
Pf6N2E2_285 +0.3 1.6 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_946 +0.3 0.9 Transcriptional regulator, LysR family compare
Pf6N2E2_3729 +0.3 1.7 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_1049 +0.3 1.2 hypothetical protein compare
Pf6N2E2_861 +0.3 1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_1723 +0.3 1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1750 +0.3 1.4 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_2835 +0.3 1.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5280 +0.3 1.7 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf6N2E2_5476 +0.3 1.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5346 +0.3 1.0 rRNA small subunit methyltransferase I compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Cerium(III) chloride across organisms