Experiment set7IT041 for Caulobacter crescentus NA1000

PYE 4C survival rep1 58 days

Group: survival
Media: PYE
Culturing: Caulo_ML2, tube, Aerobic, at 4 (C), shaken=25 rpm
By: Sneha on 8-Aug-18
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate, 0.5 mM Calcium chloride

Specific Phenotypes

For 8 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Heat shock dnaK gene cluster extended	1
Lysine Biosynthesis DAP Pathway	1
N-heterocyclic aromatic compound degradation	1
Threonine and Homoserine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Glycine, serine and threonine metabolism
• Lysine biosynthesis
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Lipopolysaccharide biosynthesis
• Thiamine metabolism
• Folate biosynthesis
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-homoserine biosynthesis	3	3	1
UTP and CTP dephosphorylation I	7	5	2
dipicolinate biosynthesis	4	3	1
L-methionine biosynthesis IV	4	2	1
spermidine biosynthesis II	4	2	1
ectoine biosynthesis	5	2	1
superpathway of L-threonine biosynthesis	6	6	1
norspermidine biosynthesis	6	2	1
pyrimidine deoxyribonucleotides de novo biosynthesis IV	7	6	1
L-lysine biosynthesis III	7	6	1
L-lysine biosynthesis VI	7	6	1
3-dehydroquinate biosynthesis II (archaea)	7	3	1
cremeomycin biosynthesis	7	2	1
pyrimidine deoxyribonucleotides biosynthesis from CTP	8	6	1
superpathway of L-homoserine and L-methionine biosynthesis	8	6	1
superpathway of polyamine biosynthesis III	8	2	1
grixazone biosynthesis	8	2	1
pyrimidine deoxyribonucleotides de novo biosynthesis I	9	9	1
L-lysine biosynthesis I	9	9	1
pyrimidine deoxyribonucleotides de novo biosynthesis III	9	8	1
superpathway of S-adenosyl-L-methionine biosynthesis	9	7	1
L-lysine biosynthesis II	9	7	1
superpathway of L-methionine biosynthesis (transsulfuration)	9	7	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	12	1
chorismate biosynthesis II (archaea)	12	8	1
superpathway of L-isoleucine biosynthesis I	13	13	1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	14	12	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II	15	13	1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis	18	17	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I	18	16	1
aspartate superpathway	25	23	1
platensimycin biosynthesis	26	6	1