Experiment set7IT041 for Paraburkholderia bryophila 376MFSha3.1
Azelaic acid carbon source
Group: carbon sourceMedia: MOPS minimal media_noCarbon + Azelaic acid (10 mM)
Culturing: Burk376_ML3_JBEI, tube, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 1.3 generations
By: Allie Pearson on 8/26/19
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 9 genes in this experiment
For carbon source Azelaic acid in Paraburkholderia bryophila 376MFSha3.1
For carbon source Azelaic acid across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fatty acid metabolism
- Ubiquinone and menaquinone biosynthesis
- Purine metabolism
- Valine, leucine and isoleucine degradation
- Lysine degradation
- Tryptophan metabolism
- beta-Alanine metabolism
- Lipopolysaccharide biosynthesis
- Benzoate degradation via CoA ligation
- Propanoate metabolism
- Folate biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: