Experiment set7IT040 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.3 -3.8 Tol-Pal system protein TolB compare
IAI47_00655 -5.4 -8.0 glycosyltransferase family 4 protein compare
IAI47_17965 -5.2 -18.0 glucose-6-phosphate isomerase compare
IAI47_00760 -5.0 -5.9 envelope stress response regulator transcription factor CpxR compare
IAI47_13700 -4.7 -4.6 Tol-Pal system protein TolQ compare
IAI47_04800 -4.6 -1.4 RnfH family protein compare
IAI47_17000 -4.4 -11.7 lipoprotein NlpI compare
IAI47_09040 -4.3 -2.3 NAD-dependent epimerase compare
IAI47_10845 -4.1 -4.0 major outer membrane lipoprotein compare
IAI47_18480 -4.0 -15.0 lipid III flippase WzxE compare
IAI47_09580 -3.9 -2.7 FNR family transcription factor compare
IAI47_17120 -3.8 -3.7 BolA family iron metabolism protein IbaG compare
IAI47_13415 -3.6 -13.2 L,D-transpeptidase family protein compare
IAI47_10835 -3.6 -1.1 tRNA-Val compare
IAI47_12275 -3.6 -15.0 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_18830 -3.5 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_15635 -3.5 -2.7 RNA polymerase-binding protein DksA compare
IAI47_12280 -3.4 -10.4 glucan biosynthesis protein G compare
IAI47_08085 -3.4 -4.1 helix-turn-helix domain-containing protein compare
IAI47_12885 -3.4 -8.8 pyruvate formate lyase 1-activating protein compare
IAI47_05155 -3.4 -18.7 polyphosphate kinase 1 compare
IAI47_00780 -3.3 -2.3 6-phosphofructokinase compare
IAI47_12470 -3.3 -15.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_08700 -3.2 -3.9 RNA chaperone ProQ compare
IAI47_13885 -3.1 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_13695 -3.1 -0.9 colicin uptake protein TolR compare
IAI47_17155 -2.9 -14.9 calcium/sodium antiporter compare
IAI47_11375 -2.9 -1.8 hypothetical protein compare
IAI47_08705 -2.9 -5.2 carboxy terminal-processing peptidase compare
IAI47_12880 -2.9 -17.8 formate C-acetyltransferase compare
IAI47_07030 -2.8 -8.5 HAD family hydrolase compare
IAI47_13950 -2.8 -1.7 PhoH family protein compare
IAI47_07025 -2.7 -7.6 glycosyltransferase family 4 protein compare
IAI47_18470 -2.7 -14.5 ECA oligosaccharide polymerase compare
IAI47_12925 -2.6 -4.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_09055 -2.6 -10.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_04110 -2.6 -19.6 two-component sensor histidine kinase BarA compare
IAI47_04335 -2.6 -4.3 tRNA-Arg compare
IAI47_21595 -2.6 -11.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_18055 -2.5 -6.3 DNA-binding protein HU-alpha compare
IAI47_10430 -2.5 -2.3 hypothetical protein compare
IAI47_13690 -2.5 -0.8 cell envelope integrity protein TolA compare
IAI47_15485 -2.4 -1.2 molecular chaperone Skp compare
IAI47_11475 -2.4 -1.0 hypothetical protein compare
IAI47_05070 -2.3 -0.7 outer membrane protein assembly factor BamB compare
IAI47_15970 -2.3 -2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_03550 -2.3 -14.8 membrane-bound lytic murein transglycosylase MltC compare
IAI47_00675 -2.2 -14.4 glycosyltransferase family 9 protein compare
IAI47_17005 -2.2 -4.8 polyribonucleotide nucleotidyltransferase compare
IAI47_08445 -2.1 -1.1 Holliday junction branch migration protein RuvA compare
IAI47_18215 -2.1 -2.3 Trk system potassium transporter TrkH compare
IAI47_03820 -2.1 -3.2 site-specific tyrosine recombinase XerD compare
IAI47_10320 -2.1 -0.9 Rrf2 family transcriptional regulator compare
IAI47_03645 -2.1 -13.4 O-antigen ligase family protein compare
IAI47_13720 -2.1 -5.1 cytochrome d ubiquinol oxidase subunit II compare
IAI47_00465 -2.0 -2.4 ribosome-dependent GTPase TypA compare
IAI47_13625 -2.0 -7.8 CDF family zinc transporter ZitB compare
IAI47_06135 -2.0 -3.5 phosphohistidine phosphatase SixA compare
IAI47_11760 -2.0 -1.3 TonB-dependent siderophore receptor compare
IAI47_01475 -1.9 -8.6 MurR/RpiR family transcriptional regulator compare
IAI47_16390 -1.9 -0.8 tRNA-Leu compare
IAI47_17020 -1.9 -3.1 30S ribosome-binding factor RbfA compare
IAI47_00670 -1.8 -12.9 sugar glycosyltransferase compare
IAI47_19945 -1.8 -0.8 hypothetical protein compare
IAI47_20600 -1.8 -1.8 hypothetical protein compare
IAI47_21600 -1.8 -3.4 EamA family transporter compare
IAI47_14075 -1.8 -2.4 transcription antiterminator/RNA stability regulator CspE compare
IAI47_03375 -1.8 -8.5 peptide chain release factor 3 compare
IAI47_17165 -1.7 -9.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_17235 -1.7 -9.3 stringent starvation protein A compare
IAI47_03640 -1.7 -9.6 glycosyltransferase compare
IAI47_08450 -1.7 -2.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16085 -1.7 -1.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_08680 -1.7 -6.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_16520 -1.7 -8.9 hypothetical protein compare
IAI47_05090 -1.6 -3.7 hypothetical protein compare
IAI47_09635 -1.6 -3.9 hypothetical protein compare
IAI47_04300 -1.6 -6.3 recombinase RecA compare
IAI47_10545 -1.6 -2.1 hypothetical protein compare
IAI47_14200 -1.6 -3.5 hypothetical protein compare
IAI47_14295 -1.6 -3.6 hypothetical protein compare
IAI47_11415 -1.6 -1.3 hypothetical protein compare
IAI47_00940 -1.6 -7.1 HTH-type transcriptional repressor FabR compare
IAI47_16420 -1.6 -9.9 LacI family DNA-binding transcriptional regulator compare
IAI47_00870 -1.5 -0.9 50S ribosomal protein L31 compare
IAI47_01000 -1.5 -10.7 HTH-type transcriptional regulator HdfR compare
IAI47_12930 -1.5 -3.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_06915 -1.5 -8.1 outer membrane assembly protein AsmA compare
IAI47_09305 -1.5 -2.9 cyclic di-GMP phosphodiesterase compare
IAI47_11995 -1.4 -5.1 beta-N-acetylhexosaminidase compare
IAI47_14210 -1.4 -4.6 hypothetical protein compare
IAI47_02260 -1.4 -4.1 Zn(2+)-responsive transcriptional regulator compare
IAI47_05660 -1.4 -5.6 serine protease compare
IAI47_18520 -1.4 -8.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_00770 -1.4 -0.8 general stress protein compare
IAI47_03680 -1.4 -8.9 transketolase compare
IAI47_20595 -1.4 -2.9 GhoT/OrtT family toxin compare
IAI47_13065 -1.3 -1.6 DUF1418 family protein compare
IAI47_12265 -1.3 -5.0 secY/secA suppressor protein compare
IAI47_07455 -1.3 -3.4 hypothetical protein compare
IAI47_21765 -1.3 -1.4 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_15005 -1.3 -2.0 hypothetical protein compare
IAI47_07905 -1.3 -0.6 Arc family DNA-binding protein compare
IAI47_10840 -1.3 -2.3 pyruvate kinase PykF compare
IAI47_06245 -1.3 -2.8 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_19825 -1.3 -5.3 EAL domain-containing protein compare
IAI47_08440 -1.3 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_09750 -1.2 -5.1 ROK family transcriptional regulator compare
IAI47_02305 -1.2 -5.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
IAI47_00500 -1.2 -7.3 ATP-dependent DNA helicase RecG compare
IAI47_04830 -1.2 -2.7 autonomous glycyl radical cofactor GrcA compare
IAI47_18400 -1.2 -1.9 tyrosine recombinase XerC compare
IAI47_11470 -1.2 -2.9 IS1 family transposase compare
IAI47_01355 -1.2 -3.7 universal stress protein UspA compare
IAI47_04120 -1.2 -8.2 GTP diphosphokinase compare
IAI47_18490 -1.2 -4.7 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_03590 -1.2 -5.6 YggT family protein compare
IAI47_10755 -1.2 -0.9 DUF1289 domain-containing protein compare
IAI47_10470 -1.1 -1.5 electron transport complex subunit E compare
IAI47_11635 -1.1 -3.1 hypothetical protein compare
IAI47_07005 -1.1 -2.7 glycosyltransferase family 4 protein compare
IAI47_18015 -1.1 -7.7 homoserine O-succinyltransferase compare
IAI47_02255 -1.1 -6.8 DUF1992 domain-containing protein compare
IAI47_16195 -1.1 -6.5 transaldolase compare
IAI47_06595 -1.1 -2.4 hypothetical protein compare
IAI47_19325 -1.1 -3.0 transposase compare
IAI47_06965 -1.1 -1.1 glycosyltransferase family 2 protein compare
IAI47_11150 -1.1 -2.8 D-threitol dehydrogenase compare
IAI47_05080 -1.1 -2.4 zinc ribbon domain-containing protein compare
IAI47_10565 -1.1 -1.5 DUF4113 domain-containing protein compare
IAI47_04865 -1.1 -1.3 SoxR-reducing system protein RseC compare
IAI47_19245 -1.1 -2.6 SIS domain-containing protein compare
IAI47_01005 -1.0 -5.9 DUF413 domain-containing protein compare
IAI47_11045 -1.0 -3.3 hypothetical protein compare
IAI47_12305 -1.0 -3.3 hypothetical protein compare
IAI47_11550 -1.0 -1.7 hypothetical protein compare
IAI47_12565 -1.0 -6.9 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_01135 -1.0 -0.8 hypothetical protein compare
IAI47_07020 -1.0 -1.0 hypothetical protein compare
IAI47_00375 -1.0 -6.6 ribose operon transcriptional repressor RbsR compare
IAI47_21530 -1.0 -3.7 FeoA domain-containing protein compare
IAI47_12865 -1.0 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_01545 -1.0 -2.8 cell division ATP-binding protein FtsE compare
IAI47_12645 -1.0 -2.4 porin OmpA compare
IAI47_16095 -1.0 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_03615 -1.0 -5.0 glutathione synthase compare
IAI47_06235 -1.0 -4.5 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_12435 -1.0 -1.4 hypothetical protein compare
IAI47_02265 -1.0 -3.1 alternative ribosome-rescue factor A compare
IAI47_01345 -1.0 -6.6 oligopeptidase A compare
IAI47_18900 -1.0 -4.2 VOC family protein compare
IAI47_10520 -1.0 -1.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_18705 -1.0 -5.4 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_19935 -1.0 -2.7 hypothetical protein compare
IAI47_21610 -1.0 -5.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_18415 -0.9 -2.0 lipoprotein compare
IAI47_20415 -0.9 -5.0 two-component system response regulator DcuR compare
IAI47_17815 -0.9 -8.0 excinuclease ABC subunit UvrA compare
IAI47_05690 -0.9 -2.7 hypothetical protein compare
IAI47_01350 -0.9 -5.5 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
IAI47_11360 -0.9 -1.6 hypothetical protein compare
IAI47_06425 -0.9 -5.3 GNAT family N-acetyltransferase compare
IAI47_07525 -0.9 -1.9 conjugal transfer protein TraD compare
IAI47_10340 -0.9 -3.5 mannose-6-phosphate isomerase compare
IAI47_02090 -0.9 -2.7 elongation factor Tu compare
IAI47_05680 -0.9 -3.9 hypothetical protein compare
IAI47_04465 -0.9 -7.0 MFS transporter compare
IAI47_18715 -0.9 -1.5 YibL family ribosome-associated protein compare
IAI47_07180 -0.9 -2.9 DUF496 family protein compare
IAI47_10530 -0.9 -2.8 hypothetical protein compare
IAI47_09525 -0.9 -3.7 serine protease compare
IAI47_13355 -0.9 -5.7 DMT family transporter compare
IAI47_18410 -0.9 -2.0 diaminopimelate epimerase compare
IAI47_03440 -0.9 -2.0 general stress protein compare
IAI47_08635 -0.9 -2.5 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_17645 -0.9 -3.3 hypothetical protein compare
IAI47_07490 -0.9 -1.3 DNA-binding protein compare
IAI47_00430 -0.9 -6.7 DNA polymerase I compare
IAI47_07010 -0.9 -1.6 ABC transporter permease compare
IAI47_09380 -0.9 -3.3 peptide ABC transporter substrate-binding protein SapA compare
IAI47_09630 -0.9 -3.0 type VI secretion system tube protein Hcp compare
IAI47_08840 -0.9 -3.8 ribonuclease D compare
IAI47_20480 -0.9 -3.6 YfiR family protein compare
IAI47_12790 -0.9 -0.4 chromosome partition protein MukE compare
IAI47_00460 -0.9 -1.6 glutamate--ammonia ligase compare
IAI47_11450 -0.9 -2.4 ankyrin repeat domain-containing protein compare
IAI47_08620 -0.9 -4.9 alcohol dehydrogenase AdhP compare
IAI47_04690 -0.8 -3.6 hypothetical protein compare
IAI47_06330 -0.8 -4.8 DUF412 domain-containing protein compare
IAI47_12655 -0.8 -5.6 Lon protease family protein compare
IAI47_07485 -0.8 -1.8 DUF4756 family protein compare
IAI47_14230 -0.8 -3.8 DotU family type IV/VI secretion system protein compare
IAI47_19620 -0.8 -4.6 LacI family DNA-binding transcriptional regulator compare
IAI47_01325 -0.8 -6.2 glutathione-disulfide reductase compare
IAI47_04350 -0.8 -6.1 glutamate--cysteine ligase compare
IAI47_03400 -0.8 -3.5 deoxyribose-phosphate aldolase compare
IAI47_02990 -0.8 -5.1 hypothetical protein compare
IAI47_11880 -0.8 -1.2 hypothetical protein compare
IAI47_05425 -0.8 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_16810 -0.8 -5.5 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms