Experiment set7IT040 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sodium adipate carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_00240 +2.9 23.4 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01927 +2.8 24.5 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_03361 +2.8 5.3 2-keto-3-deoxy-L-rhamnonate aldolase RhmA compare
H281DRAFT_00236 +2.6 9.7 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_00782 +2.3 9.2 transcriptional regulator, LysR family compare
H281DRAFT_06056 +2.3 17.3 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_01443 +2.0 2.1 RND family efflux transporter, MFP subunit compare
H281DRAFT_00504 +2.0 5.8 hypothetical protein compare
H281DRAFT_00812 +2.0 4.4 molybdopterin molybdotransferase compare
H281DRAFT_06225 +2.0 16.6 Anaerobic selenocysteine-containing dehydrogenase compare
H281DRAFT_00779 +2.0 4.5 sulfate transport system permease protein compare
H281DRAFT_04623 +1.9 10.8 transcriptional regulator, TetR family compare
H281DRAFT_06190 +1.9 2.1 DNA-binding protein H-NS compare
H281DRAFT_02086 +1.9 10.7 transcriptional regulator, MerR family compare
H281DRAFT_00627 +1.8 13.2 phosphoenolpyruvate synthase compare
H281DRAFT_03362 +1.7 3.7 Acyl-CoA dehydrogenase compare
H281DRAFT_01830 +1.7 7.7 transcriptional regulator, LacI family compare
H281DRAFT_05315 +1.7 3.0 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_04338 +1.6 8.3 cyclic pyranopterin monophosphate synthase subunit MoaA compare
H281DRAFT_06039 +1.6 2.0 molybdate transport system ATP-binding protein compare
H281DRAFT_04562 +1.6 4.0 polyribonucleotide nucleotidyltransferase compare
H281DRAFT_03365 +1.5 3.6 choline dehydrogenase compare
H281DRAFT_03905 +1.5 2.0 D-methionine transport system permease protein compare
H281DRAFT_02741 +1.5 2.9 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03266 +1.5 1.7 Nicotinamidase-related amidase compare
H281DRAFT_06490 +1.4 2.4 hypothetical protein compare
H281DRAFT_06266 +1.4 4.5 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_01028 +1.4 1.9 peptide/nickel transport system permease protein compare
H281DRAFT_04691 +1.4 10.0 glutamate-ammonia-ligase adenylyltransferase compare
H281DRAFT_04737 +1.4 7.6 glutaryl-CoA dehydrogenase compare
H281DRAFT_04337 +1.4 3.0 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_01931 +1.4 6.2 UPF0042 nucleotide-binding protein compare
H281DRAFT_06081 +1.4 1.3 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_04008 +1.4 2.7 RNAse PH compare
H281DRAFT_01190 +1.4 1.5 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_02832 +1.4 2.3 hypothetical protein compare
H281DRAFT_03364 +1.3 3.5 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_02941 +1.3 4.1 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03360 +1.3 2.3 succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase compare
H281DRAFT_04492 +1.3 7.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04226 +1.3 1.8 hypothetical protein compare
H281DRAFT_00147 +1.2 2.7 uncharacterized domain 1-containing protein compare
H281DRAFT_00706 +1.2 1.3 outer membrane protein compare
H281DRAFT_06134 +1.2 1.3 hypothetical protein compare
H281DRAFT_01204 +1.2 2.1 hypothetical protein compare
H281DRAFT_04733 +1.2 3.4 Protein of unknown function (DUF3318) compare
H281DRAFT_01246 +1.2 1.4 hypothetical protein compare
H281DRAFT_05021 +1.1 1.4 Response regulator compare
H281DRAFT_02543 +1.1 3.5 GntR family transcriptional regulator compare
H281DRAFT_00244 +1.1 6.3 trehalose 6-phosphate synthase compare
H281DRAFT_01105 +1.1 2.1 transcriptional regulator, AraC family compare
H281DRAFT_00348 +1.1 1.2 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01827 +1.1 1.5 hypothetical protein compare
H281DRAFT_02787 +1.1 1.8 Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family compare
H281DRAFT_05399 +1.1 2.8 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01584 +1.1 1.6 enamidase compare
H281DRAFT_02008 +1.1 5.4 phosphocarrier protein compare
H281DRAFT_00522 +1.1 2.9 GTP-binding protein HflX compare
H281DRAFT_01390 +1.1 1.6 hypothetical protein compare
H281DRAFT_06170 +1.1 2.7 hypothetical protein compare
H281DRAFT_00405 +1.1 1.3 Predicted small secreted protein compare
H281DRAFT_03502 +1.1 2.3 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_01201 +1.1 3.5 3-hydroxyisobutyrate dehydrogenase compare
H281DRAFT_00377 +1.1 1.9 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_01125 +1.0 1.0 protein of unknown function (DUF2760) compare
H281DRAFT_02346 +1.0 2.0 general secretion pathway protein M compare
H281DRAFT_00780 +1.0 2.3 sulfate transport system permease protein compare
H281DRAFT_01244 +1.0 2.2 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_05744 +1.0 2.3 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_03245 +1.0 3.7 Uncharacterized iron-regulated membrane protein compare
H281DRAFT_01417 +1.0 2.1 anti-sigma-28 factor, FlgM family compare
H281DRAFT_00102 +1.0 1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_00116 +1.0 1.2 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_00528 +1.0 2.4 hypothetical protein compare
H281DRAFT_06388 +1.0 2.0 Sugar phosphate permease compare
H281DRAFT_01121 +1.0 2.9 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06297 +1.0 1.6 L-arabinose-binding protein compare
H281DRAFT_01644 +1.0 1.8 muconolactone delta-isomerase compare
H281DRAFT_04467 +1.0 5.9 UDP-glucose pyrophosphorylase compare
H281DRAFT_06462 +1.0 1.3 hypothetical protein compare
H281DRAFT_06087 +1.0 2.5 Uncharacterized membrane protein compare
H281DRAFT_05705 +1.0 1.4 hypothetical protein compare
H281DRAFT_01825 +1.0 1.9 Outer membrane protein (porin) compare
H281DRAFT_01284 +1.0 3.3 transcriptional regulator, LysR family compare
H281DRAFT_05983 +1.0 1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00075 +1.0 0.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03118 +1.0 1.3 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_05102 +1.0 3.5 ribosome maturation factor RimP compare
H281DRAFT_04755 +1.0 2.1 transcriptional regulator, LysR family compare
H281DRAFT_00710 +1.0 1.3 tRNA_Leu_CAG compare
H281DRAFT_01202 +1.0 2.3 methylmalonate-semialdehyde dehydrogenase [acylating] compare
H281DRAFT_06385 +1.0 1.7 hypothetical protein compare
H281DRAFT_04004 +1.0 2.5 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_05641 +0.9 2.5 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_02574 +0.9 1.4 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05974 +0.9 1.3 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_06269 +0.9 1.5 hypoxanthine phosphoribosyltransferase compare
H281DRAFT_00254 +0.9 5.4 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_04924 +0.9 2.4 iron complex outermembrane recepter protein compare
H281DRAFT_00893 +0.9 1.8 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_02718 +0.9 1.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04440 +0.9 2.3 Predicted NTP pyrophosphohydrolase, NUDIX family compare
H281DRAFT_00920 +0.9 1.8 transcriptional regulator, GntR family compare
H281DRAFT_03599 +0.9 2.3 Putative zinc-finger compare
H281DRAFT_00556 +0.9 2.1 NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit compare
H281DRAFT_02561 +0.9 3.0 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_01836 +0.9 1.7 hypothetical protein compare
H281DRAFT_03363 +0.9 3.0 fumarate reductase (CoM/CoB) subunit A compare
H281DRAFT_06046 +0.9 1.2 serine/threonine protein phosphatase 1 compare
H281DRAFT_01042 +0.9 1.8 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_04788 +0.9 2.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03748 +0.9 2.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03745 +0.9 1.8 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_00255 +0.9 1.1 hypothetical protein compare
H281DRAFT_00376 +0.9 3.0 transcriptional regulator, TetR family compare
H281DRAFT_06356 +0.9 2.4 RraA famliy compare
H281DRAFT_05724 +0.9 3.5 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_05962 +0.9 0.9 RraA famliy compare
H281DRAFT_03870 +0.9 2.6 hypothetical protein compare
H281DRAFT_04629 +0.9 2.3 conserved hypothetical protein compare
H281DRAFT_03437 +0.9 2.3 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_02459 +0.9 2.0 sarcosine oxidase subunit gamma compare
H281DRAFT_05246 +0.9 2.9 Predicted membrane protein compare
H281DRAFT_01299 +0.9 1.3 methylene-tetrahydromethanopterin dehydrogenase compare
H281DRAFT_05961 +0.9 1.2 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_02529 +0.9 1.3 shikimate dehydrogenase compare
H281DRAFT_00861 +0.8 3.4 hypothetical protein compare
H281DRAFT_02846 +0.8 1.6 Uncharacterized conserved protein YndB, AHSA1/START domain compare
H281DRAFT_00091 +0.8 1.6 urea transport system ATP-binding protein compare
H281DRAFT_05158 +0.8 2.0 putative urate catabolism protein compare
H281DRAFT_05645 +0.8 3.2 phospholipid transport system substrate-binding protein compare
H281DRAFT_01906 +0.8 2.2 cytochrome c oxidase subunit 2 compare
H281DRAFT_00746 +0.8 3.1 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_01767 +0.8 1.2 hypothetical protein compare
H281DRAFT_03785 +0.8 2.9 hypothetical protein compare
H281DRAFT_00353 +0.8 2.2 G/U mismatch-specific uracil-DNA glycosylase compare
H281DRAFT_02172 +0.8 4.0 transcriptional regulator, LacI family compare
H281DRAFT_00888 +0.8 2.1 phytoene synthase compare
H281DRAFT_01001 +0.8 2.0 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_04310 +0.8 3.1 hypothetical protein compare
H281DRAFT_05888 +0.8 2.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_00169 +0.8 1.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_06083 +0.8 1.3 heat shock protein Hsp20 compare
H281DRAFT_06289 +0.8 3.4 hypothetical protein compare
H281DRAFT_03154 +0.8 1.3 two-component system, NarL family, sensor kinase compare
H281DRAFT_02890 +0.8 1.4 peroxiredoxin (alkyl hydroperoxide reductase subunit C) compare
H281DRAFT_00717 +0.8 1.1 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_02879 +0.8 2.7 CheB methylesterase compare
H281DRAFT_05336 +0.8 2.3 transcriptional regulator, MerR family compare
H281DRAFT_00939 +0.8 2.4 hypothetical protein compare
H281DRAFT_00753 +0.8 1.3 Protein of unknown function (DUF1488) compare
H281DRAFT_02170 +0.8 1.8 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_03240 +0.8 2.0 pyruvate dehydrogenase (quinone) compare
H281DRAFT_02944 +0.8 1.6 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_06400 +0.8 1.2 hypothetical protein compare
H281DRAFT_02484 +0.8 2.0 transcriptional regulator, GntR family compare
H281DRAFT_04368 +0.8 4.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05041 +0.8 1.0 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00097 +0.8 2.1 Protein of unknown function (DUF2844) compare
H281DRAFT_02485 +0.8 2.4 gamma-glutamyltranspeptidase / glutathione hydrolase compare
H281DRAFT_01617 +0.8 2.5 hypothetical protein compare
H281DRAFT_01391 +0.8 1.4 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_03411 +0.8 2.0 hypothetical protein compare
H281DRAFT_05883 +0.8 2.7 ornithine cyclodeaminase (EC 4.3.1.12) compare
H281DRAFT_01032 +0.8 4.2 peptide/nickel transport system ATP-binding protein compare
H281DRAFT_02245 +0.8 3.5 transcriptional regulator, LysR family compare
H281DRAFT_04415 +0.8 0.9 phosphate uptake regulator, PhoU compare
H281DRAFT_02176 +0.8 3.8 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_04552 +0.8 2.9 acetolactate synthase, small subunit compare
H281DRAFT_03220 +0.8 1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_04170 +0.8 3.3 multidrug efflux pump compare
H281DRAFT_01367 +0.8 1.9 Protein of unknown function (DUF2891) compare
H281DRAFT_05159 +0.8 2.0 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_04427 +0.8 2.1 hypothetical protein compare
H281DRAFT_03320 +0.8 1.9 Uncharacterized conserved protein compare
H281DRAFT_00130 +0.7 0.6 Predicted secreted protein compare
H281DRAFT_00933 +0.7 2.8 hypothetical protein compare
H281DRAFT_04594 +0.7 2.7 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_03742 +0.7 2.8 Sugar phosphate permease compare
H281DRAFT_00761 +0.7 1.9 molybdenum-pterin binding domain-containing protein compare
H281DRAFT_03155 +0.7 1.4 Protein of unknown function (DUF3311) compare
H281DRAFT_01401 +0.7 1.7 Polyisoprenoid-binding protein YceI compare
H281DRAFT_00819 +0.7 0.8 competence protein ComEA compare
H281DRAFT_06445 +0.7 0.9 Molybdopterin synthase catalytic subunit compare
H281DRAFT_01098 +0.7 1.8 hypothetical protein compare
H281DRAFT_05561 +0.7 3.6 transcriptional regulator, TetR family compare
H281DRAFT_05274 +0.7 1.8 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_00875 +0.7 2.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_00998 +0.7 1.1 outer membrane protein, multidrug efflux system compare
H281DRAFT_00908 +0.7 1.6 D-amino-acid dehydrogenase compare
H281DRAFT_01243 +0.7 1.0 lipoprotein, YaeC family compare
H281DRAFT_02105 +0.7 1.7 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_03645 +0.7 1.2 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_03271 +0.7 1.8 hypothetical protein compare
H281DRAFT_02231 +0.7 0.7 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_04904 +0.7 1.1 outer membrane transport energization protein ExbD compare
H281DRAFT_01632 +0.7 5.3 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_05642 +0.7 2.5 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_03866 +0.7 2.1 transcriptional regulator, LysR family compare
H281DRAFT_06309 +0.7 2.7 ribonuclease T1 compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Sodium adipate in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sodium adipate across organisms