Experiment set7IT039 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13700 -5.1 -3.5 Tol-Pal system protein TolQ compare
IAI47_00760 -5.0 -6.0 envelope stress response regulator transcription factor CpxR compare
IAI47_17000 -4.7 -10.4 lipoprotein NlpI compare
IAI47_09040 -4.6 -2.7 NAD-dependent epimerase compare
IAI47_13685 -4.5 -3.8 Tol-Pal system protein TolB compare
IAI47_09580 -4.2 -2.9 FNR family transcription factor compare
IAI47_17965 -4.2 -17.9 glucose-6-phosphate isomerase compare
IAI47_18480 -4.1 -15.7 lipid III flippase WzxE compare
IAI47_08085 -4.0 -2.8 helix-turn-helix domain-containing protein compare
IAI47_00655 -3.9 -4.9 glycosyltransferase family 4 protein compare
IAI47_13415 -3.9 -18.1 L,D-transpeptidase family protein compare
IAI47_12275 -3.8 -16.1 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_07350 -3.7 -1.2 hypothetical protein compare
IAI47_19945 -3.6 -1.2 hypothetical protein compare
IAI47_12280 -3.5 -11.1 glucan biosynthesis protein G compare
IAI47_16085 -3.3 -2.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_08705 -3.3 -4.5 carboxy terminal-processing peptidase compare
IAI47_05155 -3.3 -19.4 polyphosphate kinase 1 compare
IAI47_00300 -3.3 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00780 -3.2 -3.2 6-phosphofructokinase compare
IAI47_21880 -3.2 -1.1 ParA family protein compare
IAI47_08700 -3.2 -5.3 RNA chaperone ProQ compare
IAI47_10845 -3.2 -5.1 major outer membrane lipoprotein compare
IAI47_13695 -3.1 -1.0 colicin uptake protein TolR compare
IAI47_07030 -3.0 -11.3 HAD family hydrolase compare
IAI47_17155 -2.8 -11.4 calcium/sodium antiporter compare
IAI47_04895 -2.8 -4.9 pyridoxine 5'-phosphate synthase compare
IAI47_12470 -2.7 -14.8 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_12885 -2.7 -10.0 pyruvate formate lyase 1-activating protein compare
IAI47_12880 -2.7 -18.2 formate C-acetyltransferase compare
IAI47_07025 -2.6 -6.2 glycosyltransferase family 4 protein compare
IAI47_13690 -2.6 -0.8 cell envelope integrity protein TolA compare
IAI47_15485 -2.5 -1.4 molecular chaperone Skp compare
IAI47_13625 -2.5 -10.1 CDF family zinc transporter ZitB compare
IAI47_09055 -2.5 -11.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_15635 -2.5 -2.9 RNA polymerase-binding protein DksA compare
IAI47_18470 -2.5 -13.8 ECA oligosaccharide polymerase compare
IAI47_00870 -2.4 -1.1 50S ribosomal protein L31 compare
IAI47_15970 -2.4 -2.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_18830 -2.4 -2.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_05070 -2.4 -0.8 outer membrane protein assembly factor BamB compare
IAI47_03550 -2.3 -14.2 membrane-bound lytic murein transglycosylase MltC compare
IAI47_10320 -2.3 -1.1 Rrf2 family transcriptional regulator compare
IAI47_12925 -2.3 -4.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_08440 -2.2 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_18215 -2.1 -2.9 Trk system potassium transporter TrkH compare
IAI47_04110 -2.1 -16.8 two-component sensor histidine kinase BarA compare
IAI47_00465 -2.0 -3.4 ribosome-dependent GTPase TypA compare
IAI47_03645 -2.0 -14.3 O-antigen ligase family protein compare
IAI47_21600 -2.0 -3.4 EamA family transporter compare
IAI47_17005 -2.0 -5.6 polyribonucleotide nucleotidyltransferase compare
IAI47_18055 -2.0 -5.8 DNA-binding protein HU-alpha compare
IAI47_04865 -2.0 -1.7 SoxR-reducing system protein RseC compare
IAI47_14075 -1.9 -2.9 transcription antiterminator/RNA stability regulator CspE compare
IAI47_03640 -1.9 -12.6 glycosyltransferase compare
IAI47_18415 -1.9 -4.0 lipoprotein compare
IAI47_00670 -1.8 -11.8 sugar glycosyltransferase compare
IAI47_02260 -1.8 -6.1 Zn(2+)-responsive transcriptional regulator compare
IAI47_07180 -1.8 -7.1 DUF496 family protein compare
IAI47_09305 -1.8 -3.4 cyclic di-GMP phosphodiesterase compare
IAI47_01475 -1.8 -8.1 MurR/RpiR family transcriptional regulator compare
IAI47_04300 -1.8 -6.7 recombinase RecA compare
IAI47_00675 -1.7 -10.9 glycosyltransferase family 9 protein compare
IAI47_17165 -1.7 -11.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_13720 -1.7 -4.6 cytochrome d ubiquinol oxidase subunit II compare
IAI47_21595 -1.7 -8.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_01000 -1.6 -11.2 HTH-type transcriptional regulator HdfR compare
IAI47_05035 -1.6 -2.9 nucleoside-diphosphate kinase compare
IAI47_04335 -1.6 -4.0 tRNA-Arg compare
IAI47_06245 -1.6 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_12865 -1.5 -8.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00110 -1.5 -5.2 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_16520 -1.5 -8.4 hypothetical protein compare
IAI47_08445 -1.5 -0.9 Holliday junction branch migration protein RuvA compare
IAI47_07005 -1.5 -4.0 glycosyltransferase family 4 protein compare
IAI47_12930 -1.5 -3.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_17215 -1.5 -1.3 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_08450 -1.4 -2.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_03375 -1.4 -7.8 peptide chain release factor 3 compare
IAI47_20595 -1.4 -3.2 GhoT/OrtT family toxin compare
IAI47_04120 -1.4 -9.4 GTP diphosphokinase compare
IAI47_16420 -1.4 -9.0 LacI family DNA-binding transcriptional regulator compare
IAI47_12645 -1.4 -2.8 porin OmpA compare
IAI47_10835 -1.4 -0.8 tRNA-Val compare
IAI47_19295 -1.4 -2.3 hypothetical protein compare
IAI47_18410 -1.4 -4.9 diaminopimelate epimerase compare
IAI47_09635 -1.4 -3.7 hypothetical protein compare
IAI47_00940 -1.3 -7.5 HTH-type transcriptional repressor FabR compare
IAI47_17235 -1.3 -7.1 stringent starvation protein A compare
IAI47_18520 -1.3 -7.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_03725 -1.3 -7.4 phosphoglycerate dehydrogenase compare
IAI47_13885 -1.3 -1.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_16095 -1.3 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_01545 -1.3 -4.0 cell division ATP-binding protein FtsE compare
IAI47_12305 -1.3 -5.4 hypothetical protein compare
IAI47_12565 -1.3 -8.0 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_11415 -1.3 -1.3 hypothetical protein compare
IAI47_15155 -1.2 -3.4 DUF943 family protein compare
IAI47_16080 -1.2 -6.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_01005 -1.2 -7.8 DUF413 domain-containing protein compare
IAI47_10725 -1.2 -1.9 DUF1656 domain-containing protein compare
IAI47_14295 -1.2 -2.8 hypothetical protein compare
IAI47_05745 -1.2 -1.3 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_05090 -1.2 -3.4 hypothetical protein compare
IAI47_03820 -1.2 -2.5 site-specific tyrosine recombinase XerD compare
IAI47_06235 -1.1 -4.4 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_17645 -1.1 -4.3 hypothetical protein compare
IAI47_01650 -1.1 -7.2 gluconate operon transcriptional repressor GntR compare
IAI47_06030 -1.1 -3.7 hypothetical protein compare
IAI47_15540 -1.1 -6.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_03680 -1.1 -7.5 transketolase compare
IAI47_17255 -1.1 -1.9 DUF1043 family protein compare
IAI47_16195 -1.1 -6.8 transaldolase compare
IAI47_00505 -1.1 -4.7 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_19685 -1.1 -2.9 hypothetical protein compare
IAI47_11995 -1.1 -3.9 beta-N-acetylhexosaminidase compare
IAI47_06120 -1.1 -2.0 YfcZ/YiiS family protein compare
IAI47_03615 -1.1 -5.4 glutathione synthase compare
IAI47_01530 -1.1 -4.6 DUF1145 family protein compare
IAI47_11470 -1.1 -2.5 IS1 family transposase compare
IAI47_10185 -1.1 -3.0 PTS sugar transporter subunit IIB compare
IAI47_08355 -1.1 -2.3 flagellar protein FlhE compare
IAI47_06965 -1.0 -1.3 glycosyltransferase family 2 protein compare
IAI47_02255 -1.0 -6.5 DUF1992 domain-containing protein compare
IAI47_08680 -1.0 -4.7 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_17020 -1.0 -2.1 30S ribosome-binding factor RbfA compare
IAI47_15235 -1.0 -2.8 hydroxyisourate hydrolase compare
IAI47_00375 -1.0 -7.3 ribose operon transcriptional repressor RbsR compare
IAI47_20480 -1.0 -4.4 YfiR family protein compare
IAI47_09235 -1.0 -0.9 type I DNA topoisomerase compare
IAI47_00770 -1.0 -0.7 general stress protein compare
IAI47_12790 -1.0 -0.6 chromosome partition protein MukE compare
IAI47_11450 -1.0 -2.8 ankyrin repeat domain-containing protein compare
IAI47_01355 -1.0 -3.9 universal stress protein UspA compare
IAI47_18775 -1.0 -4.4 hypothetical protein compare
IAI47_09750 -1.0 -4.6 ROK family transcriptional regulator compare
IAI47_08065 -1.0 -3.6 acyltransferase compare
IAI47_18495 -0.9 -5.1 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_17120 -0.9 -2.0 BolA family iron metabolism protein IbaG compare
IAI47_19935 -0.9 -3.1 hypothetical protein compare
IAI47_03590 -0.9 -4.6 YggT family protein compare
IAI47_00835 -0.9 -2.6 cell division protein ZapB compare
IAI47_04830 -0.9 -3.0 autonomous glycyl radical cofactor GrcA compare
IAI47_09380 -0.9 -3.8 peptide ABC transporter substrate-binding protein SapA compare
IAI47_00430 -0.9 -6.9 DNA polymerase I compare
IAI47_14595 -0.9 -6.2 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_14945 -0.9 -1.9 pyrroline-5-carboxylate reductase compare
IAI47_02625 -0.9 -7.0 ribonuclease R compare
IAI47_09435 -0.9 -4.7 GtrA family protein compare
IAI47_09955 -0.9 -1.6 SDR family oxidoreductase compare
IAI47_02695 -0.9 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_17035 -0.9 -1.8 ribosome maturation factor RimP compare
IAI47_20705 -0.9 -0.8 sulfur carrier protein ThiS compare
IAI47_07015 -0.9 -3.4 ABC transporter ATP-binding protein compare
IAI47_01325 -0.9 -6.5 glutathione-disulfide reductase compare
IAI47_09730 -0.9 -3.7 DUF1471 domain-containing protein compare
IAI47_14805 -0.9 -4.4 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_11520 -0.9 -2.4 type VI secretion system tip protein VgrG compare
IAI47_08840 -0.8 -3.6 ribonuclease D compare
IAI47_11500 -0.8 -1.8 type VI secretion system tip protein VgrG compare
IAI47_20420 -0.8 -4.3 FAD:protein FMN transferase compare
IAI47_05425 -0.8 -1.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_18705 -0.8 -5.8 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_03865 -0.8 -2.0 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_01360 -0.8 -5.6 universal stress protein UspB compare
IAI47_18015 -0.8 -6.0 homoserine O-succinyltransferase compare
IAI47_11830 -0.8 -3.8 muramoyltetrapeptide carboxypeptidase compare
IAI47_21235 -0.8 -1.4 hypothetical protein compare
IAI47_05080 -0.8 -2.9 zinc ribbon domain-containing protein compare
IAI47_08850 -0.8 -2.6 septum site-determining protein MinD compare
IAI47_08045 -0.8 -1.2 NUDIX domain-containing protein compare
IAI47_06915 -0.8 -4.3 outer membrane assembly protein AsmA compare
IAI47_01125 -0.8 -3.2 stress response protein AzuC compare
IAI47_21790 -0.8 -2.2 helix-turn-helix domain-containing protein compare
IAI47_21780 -0.8 -2.3 hypothetical protein compare
IAI47_11360 -0.8 -1.6 hypothetical protein compare
IAI47_16840 -0.8 -4.1 carbamate kinase compare
IAI47_12655 -0.8 -5.2 Lon protease family protein compare
IAI47_04465 -0.8 -6.3 MFS transporter compare
IAI47_12265 -0.8 -3.1 secY/secA suppressor protein compare
IAI47_02475 -0.8 -4.1 AaeX family protein compare
IAI47_13950 -0.8 -0.8 PhoH family protein compare
IAI47_02265 -0.8 -3.4 alternative ribosome-rescue factor A compare
IAI47_14230 -0.8 -4.2 DotU family type IV/VI secretion system protein compare
IAI47_05660 -0.8 -4.3 serine protease compare
IAI47_19655 -0.8 -3.3 hypothetical protein compare
IAI47_12605 -0.8 -4.8 CoA-binding protein compare
IAI47_01345 -0.8 -5.4 oligopeptidase A compare
IAI47_00500 -0.8 -4.7 ATP-dependent DNA helicase RecG compare
IAI47_21450 -0.8 -0.6 general stress protein compare
IAI47_05665 -0.8 -2.0 hypothetical protein compare
IAI47_08610 -0.8 -2.2 tail fiber assembly protein compare
IAI47_16410 -0.7 -1.9 YbaK/EbsC family protein compare
IAI47_02600 -0.7 -4.8 FtsH protease activity modulator HflK compare
IAI47_18485 -0.7 -5.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI47_00720 -0.7 -4.9 murein hydrolase activator EnvC compare
IAI47_18675 -0.7 -4.7 MarR family transcriptional regulator compare
IAI47_19690 -0.7 -0.7 hypothetical protein compare
IAI47_00410 -0.7 -4.8 molybdenum cofactor guanylyltransferase MobA compare
IAI47_02370 -0.7 -6.0 amino acid ABC transporter permease compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms