Experiment set7IT039 for Caulobacter crescentus NA1000

Compare to:

PYE_noCalcium 30C survival rep2 28 days

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00435 +7.7 48.2 L-proline transporter (from data) compare
CCNA_03353 +6.3 30.7 metallophosphatase domain protein compare
CCNA_00280 +5.5 38.7 tRNA pseudouridine synthase A compare
CCNA_00485 +5.4 41.5 ribosomal large subunit pseudouridine synthase D compare
CCNA_03637 +4.6 34.6 triphosphate tunnel metalloenzyme family protein compare
CCNA_02424 +4.4 22.8 TetR-family transcriptional regulator compare
CCNA_02287 +4.4 22.9 TetR-family transcriptional regulator compare
CCNA_00847 +4.3 13.4 leucine-responsive regulatory protein compare
CCNA_03612 +4.3 16.8 HTH XRE-family transcriptional regulator compare
CCNA_01393 +4.2 35.7 soluble lytic murein transglycosylase compare
CCNA_02910 +3.9 31.4 TonB-dependent receptor compare
CCNA_02171 +3.8 23.9 nucleoside permease nupC compare
CCNA_03998 +3.8 23.6 GT1/WbuB-like N-acetyl-L-fucosamine transferase compare
CCNA_00164 +3.3 17.4 O-antigen polymerase compare
CCNA_00846 +3.3 22.8 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00472 +3.1 17.6 GDP-mannose 4,6 dehydratase compare
CCNA_02339 +3.1 18.1 methyltransferase compare
CCNA_01914 +3.0 19.3 16S rRNA m(2)G 1207 methyltransferase RsmC compare
CCNA_03129 +2.9 21.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03506 +2.9 15.5 putative transcriptional regulator compare
CCNA_02729 +2.8 19.6 oligopeptide transporter compare
CCNA_01784 +2.8 3.3 hypothetical protein compare
CCNA_00459 +2.8 16.9 Na+/H+ antiporter nhaA compare
CCNA_02575 +2.8 8.0 hypothetical protein compare
CCNA_02467 +2.7 15.8 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03105 +2.7 14.5 DnaJ domain protein compare
CCNA_00471 +2.6 15.9 GDP-L-fucose synthase compare
CCNA_01688 +2.5 15.8 potassium channel protein compare
CCNA_02619 +2.4 16.1 stomatin/prohibitin-related protein compare
CCNA_00161 +2.4 7.7 hypothetical protein compare
CCNA_00150 +2.4 14.5 PDZ domain family protein compare
CCNA_03948 +2.4 2.0 hypothetical protein compare
CCNA_00051 +2.4 14.7 magnesium and cobalt efflux protein CorC compare
CCNA_03244 +2.4 12.9 GntR-family transcriptional regulator compare
CCNA_03281 +2.3 12.1 AsnC-family transcriptional regulator compare
CCNA_02551 +2.3 6.5 hypothetical protein compare
CCNA_00998 +2.3 13.3 ROS/MUCR transcriptional regulator compare
CCNA_01645 +2.3 11.1 3-hydroxyisobutyrate dehydrogenase compare
CCNA_00163 +2.2 14.7 exopolysaccharide transport family protein compare
CCNA_00168 +2.2 15.3 polysaccharide export protein compare
CCNA_01181 +2.1 10.4 hypothetical protein compare
CCNA_00167 +2.1 11.2 metallophosphatase family protein compare
CCNA_00795 +2.1 4.4 two-component response regulator FixJ compare
CCNA_02698 +2.1 11.9 Inosine-uridine nucleoside N-ribohydrolase compare
CCNA_00409 +2.0 1.8 hypothetical protein compare
CCNA_02330 +2.0 6.3 hypothetical protein compare
CCNA_01729 +1.9 3.5 transporter, sodium/bile acid symporter family compare
CCNA_00233 +1.9 12.5 UDP-N-acetylglucosamine 4,6-dehydratase compare
CCNA_03667 +1.9 7.4 hypothetical protein compare
CCNA_02448 +1.8 10.9 hypothetical protein compare
CCNA_02562 +1.8 12.5 stalk cross-band protein StpA compare
CCNA_02187 +1.8 6.3 adapter for ClpXP proteolysis of tmRNA-tagged proteins SspB compare
CCNA_03210 +1.8 9.0 MarR-family transcriptional regulator compare
CCNA_03933 +1.8 5.5 hypothetical protein compare
CCNA_00162 +1.8 8.3 hypothetical protein compare
CCNA_01164 +1.7 11.8 O-linked N-acetylglucosamine transferase compare
CCNA_00796 +1.7 7.3 oxygen sensory histidine kinase FixL compare
CCNA_02036 +1.7 5.9 DNA-binding protein HU compare
CCNA_00470 +1.7 9.1 O-antigen polymerase compare
CCNA_03808 +1.7 8.8 organic solvent resistance transport system Ttg2C protein compare
CCNA_00047 +1.7 7.8 tRNA m7-G46 methyltransferase compare
CCNA_00756 +1.7 2.8 hypothetical protein compare
CCNA_03062 +1.7 9.1 cell wall hydrolase family protein compare
CCNA_02534 +1.7 2.5 hypothetical protein compare
CCNA_01681 +1.6 7.2 RimI-like acetyltransferase compare
CCNA_02151 +1.6 4.7 exodeoxyribonuclease VII small subunit compare
CCNA_01676 +1.6 0.9 hypothetical protein compare
CCNA_01224 +1.6 1.1 O-antigen membrane transport protein compare
CCNA_01204 +1.6 9.2 dTDP-glucose 4,6-dehydratase compare
CCNA_00036 +1.5 2.7 ribosome-binding factor A compare
CCNA_00852 +1.5 0.8 TetR family transcriptional regulator compare
CCNA_01385 +1.5 8.2 rRNA methylase compare
CCNA_00368 +1.5 6.6 phosphonates transport system permease protein phnE compare
CCNA_01851 +1.5 10.8 quinol cytochrome oxidase polypeptide II compare
CCNA_01848 +1.5 6.3 quinol cytochrome oxidase polypeptide IV compare
CCNA_R0075 +1.5 2.1 tRNA-Met compare
CCNA_03107 +1.5 7.3 cytidine deaminase compare
CCNA_01012 +1.5 1.0 N-formimino-L-glutamate deiminase compare
CCNA_00255 +1.4 3.1 esterase compare
CCNA_01246 +1.4 7.4 methyltransferase compare
CCNA_01103 +1.4 1.0 ADP-heptose--LPS heptosyltransferase compare
CCNA_03945 +1.4 2.3 hypothetical protein compare
CCNA_02461 +1.4 6.2 hypothetical protein compare
CCNA_01505 +1.4 3.0 hypothetical protein compare
CCNA_01847 +1.4 8.6 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01561 +1.4 2.7 hypothetical protein compare
CCNA_03024 +1.4 9.2 branched-chain amino acid aminotransferase compare
CCNA_01497 +1.4 1.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_00267 +1.4 7.2 MutT-like protein compare
CCNA_02931 +1.4 3.6 flgE-related flagellar hook protein compare
CCNA_03538 +1.4 7.1 NADH-ubiquinone oxidoreductase compare
CCNA_03807 +1.4 6.7 organic solvent resistance transport system Ttg2D protein compare
CCNA_00693 +1.4 3.2 heat shock protein 15 compare
CCNA_02286 +1.4 1.5 hypothetical protein compare
CCNA_00281 +1.4 0.7 methionyl-tRNA formyltransferase compare
CCNA_03755 +1.4 0.9 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_02425 +1.4 2.0 non-essential pilus assembly protein compare
CCNA_01444 +1.4 5.8 poly(3-hydroxyalkanoate) polymerase compare
CCNA_03856 +1.4 5.4 membrane-bound lytic murein transglycosylase A compare
CCNA_02109 +1.4 2.2 thiamine biosynthesis protein thiC compare
CCNA_02696 +1.4 7.4 AtzE family amidohydrolase compare
CCNA_03961 +1.3 2.9 hypothetical protein compare
CCNA_01918 +1.3 6.9 cyclic di-GMP effector protein PopA compare
CCNA_00443 +1.3 6.7 chemotaxis protein cheW compare
CCNA_01110 +1.3 6.3 2-dehydro-3-deoxygluconokinase compare
CCNA_02976 +1.3 6.7 MCP-signal associated domain protein compare
CCNA_03810 +1.3 7.0 organic solvent resistance transport system ATP-binding protein compare
CCNA_02650 +1.3 0.9 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_03604 +1.3 3.2 hypothetical protein compare
CCNA_02779 +1.3 5.9 LysM family peptidoglycan binding protein compare
CCNA_02961 +1.3 8.0 NeuB-family N-acetylneuraminate synthase compare
CCNA_03936 +1.3 3.5 hypothetical protein compare
CCNA_03528 +1.3 6.4 RNA methyltransferase compare
CCNA_02561 +1.3 8.1 stalk cross-band protein StpB compare
CCNA_03089 +1.3 5.4 hypothetical protein compare
CCNA_02073 +1.3 4.5 cupin domain transcriptional regulator compare
CCNA_01823 +1.3 2.0 hypothetical protein compare
CCNA_01858 +1.3 5.9 AraC-family transcriptional regulator compare
CCNA_01774 +1.3 0.7 phosphoribosylglycinamide formyltransferase compare
CCNA_02077 +1.3 3.1 5'(3')-nucleotidase/polyphosphatase SurE compare
CCNA_02324 +1.3 6.8 heat shock protein 33 hsp33 compare
CCNA_03692 +1.3 8.3 xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
CCNA_00931 +1.3 7.9 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_01644 +1.3 6.1 chemotaxis motB protein compare
CCNA_03806 +1.2 7.3 outer membrane lipoprotein compare
CCNA_03813 +1.2 5.6 intermediate filament-like cell shape determinant creS compare
CCNA_01001 +1.2 4.7 ribokinase compare
CCNA_00433 +1.2 5.8 type 1 capsular polysaccharide biosynthesis protein J compare
CCNA_03240 +1.2 6.1 glutamine synthetase compare
CCNA_02854 +1.2 4.7 two-component response regulator compare
CCNA_02616 +1.2 6.2 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02933 +1.2 7.6 aminopeptidase compare
CCNA_01850 +1.2 7.9 quinol cytochrome oxidase polypeptide I compare
CCNA_03650 +1.2 0.8 mannose-1-phosphate guanyltransferase compare
CCNA_00961 +1.2 3.9 hypothetical protein compare
CCNA_03042 +1.2 6.2 pilus assembly prepilin peptidase CpaA compare
CCNA_00114 +1.2 4.7 MarR/EmrR-family transcriptional regulator compare
CCNA_01845 +1.2 3.8 two-component response regulator protein compare
CCNA_00447 +1.2 5.0 chemotaxis protein cheD compare
CCNA_00446 +1.2 5.5 chemotaxis receiver domain protein cheYII compare
CCNA_00706 +1.2 4.6 hypothetical protein compare
CCNA_03178 +1.2 3.7 MerR-family transcriptional regulator compare
CCNA_02053 +1.2 2.0 hypothetical protein compare
CCNA_01849 +1.2 6.0 quinol cytochrome oxidase polypeptide III compare
CCNA_02158 +1.2 6.5 GT2 family glycosyltransferase compare
CCNA_01198 +1.2 5.2 dTDP-4-dehydrorhamnose reductase compare
CCNA_03271 +1.2 8.8 methionine gamma-lyase compare
CCNA_03546 +1.2 5.1 rRNA large subunit methyltransferase compare
CCNA_01752 +1.2 4.1 YicC-family protein compare
CCNA_01159 +1.2 6.6 transporter, major facilitator superfamily compare
CCNA_01530 +1.2 7.7 flagellin FljJ compare
CCNA_02980 +1.2 7.4 tryptophan 2,3-dioxygenase compare
CCNA_02737 +1.2 2.4 queuosine biosynthesis protein QueF compare
CCNA_00930 +1.2 7.4 riboflavin synthase alpha chain compare
CCNA_01916 +1.2 4.9 ribonuclease BN compare
CCNA_01175 +1.2 3.7 uroporphyrin-III C-methyltransferase compare
CCNA_00545 +1.2 5.7 acetoacetyl-CoA reductase compare
CCNA_02363 +1.2 4.8 hypothetical protein compare
CCNA_00439 +1.1 8.1 methyl-accepting chemotaxis protein compare
CCNA_03975 +1.1 3.4 hypothetical protein compare
CCNA_02297 +1.1 4.8 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_00142 +1.1 3.0 endonuclease compare
CCNA_03275 +1.1 1.1 hypothetical protein compare
CCNA_02207 +1.1 7.4 hypothetical protein compare
CCNA_03590 +1.1 1.8 anti-sigma factor NepR compare
CCNA_02549 +1.1 6.3 glucokinase compare
CCNA_00481 +1.1 1.3 HipB transcriptional regulator compare
CCNA_03629 +1.1 3.6 DNA replication inhibitor toxin SocB compare
CCNA_00367 +1.1 6.7 phosphonates-binding protein compare
CCNA_00555 +1.1 4.5 nitrogen regulatory protein P-II compare
CCNA_01857 +1.1 5.4 AraC-family transcriptional regulator compare
CCNA_01184 +1.1 5.8 MutT/nudix family hydrolase compare
CCNA_00857 +1.1 5.9 D-xylose transporter (from data) compare
CCNA_02312 +1.1 5.6 TraB superfamily protein compare
CCNA_01804 +1.1 4.5 glutathione peroxidase compare
CCNA_00369 +1.1 6.7 magnesium and cobalt efflux protein corC-like protein compare
CCNA_02560 +1.1 5.9 stalk cross-band protein StpC compare
CCNA_00448 +1.1 4.5 cheU protein compare
CCNA_02728 +1.1 4.9 hypothetical protein compare
CCNA_03241 +1.1 5.1 glutamate-1-semialdehyde 2,1-aminomutase compare
CCNA_01430 +1.1 5.2 hypothetical protein compare
CCNA_02406 +1.1 4.5 membrane lipoprotein compare
CCNA_00444 +1.1 6.1 chemotaxis protein methyltransferase compare
CCNA_00440 +1.1 2.9 STAS domain protein compare
CCNA_00269 +1.1 6.1 YbaB/EbfC-family DNA-binding protein compare
CCNA_00872 +1.1 1.5 glutaredoxin compare
CCNA_02605 +1.1 4.6 LasT-family rRNA methylase compare
CCNA_01266 +1.1 4.0 NTF2 superfamily protein compare
CCNA_02338 +1.1 5.8 hypothetical protein compare
CCNA_00929 +1.0 6.5 Riboflavin-specific deaminase family protein compare
CCNA_03777 +1.0 5.1 Tas protein compare
CCNA_02447 +1.0 6.4 PspA/IM30 family regulatory protein compare
CCNA_00271 +1.0 1.3 hypothetical protein compare
CCNA_01135 +1.0 1.2 hypothetical protein compare
CCNA_03274 +1.0 0.9 hypothetical protein compare
CCNA_00834 +1.0 6.0 flagellin FljM compare
CCNA_02695 +1.0 2.4 hypothetical protein compare
CCNA_02221 +1.0 7.3 methionine synthase I metH compare
CCNA_03095 +1.0 5.2 small-conductance mechanosensitive channel compare
CCNA_01433 +1.0 2.6 integration host factor alpha-subunit compare


Specific Phenotypes

For 45 genes in this experiment