Experiment set7IT037 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Calcium chloride dihydrate 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.4 -6.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -5.4 -2.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4353 -5.0 -7.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4352 -4.3 -4.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_773 -4.3 -9.8 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_2507 -3.8 -8.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4416 -3.7 -5.0 Tyrosine recombinase XerC compare
Pf6N2E2_144 -3.6 -17.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3834 -3.5 -10.1 Lipoprotein NlpD compare
Pf6N2E2_5527 -3.4 -3.1 Cold shock protein CspC compare
Pf6N2E2_4071 -3.4 -6.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_145 -3.1 -7.2 putative exported protein compare
Pf6N2E2_3060 -2.9 -5.1 Outer membrane protein H precursor compare
Pf6N2E2_4908 -2.9 -8.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2508 -2.9 -5.2 hypothetical protein compare
Pf6N2E2_3461 -2.8 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4611 -2.7 -4.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4162 -2.7 -4.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2510 -2.6 -5.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5001 -2.6 -2.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3658 -2.6 -8.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2506 -2.5 -14.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4886 -2.1 -11.1 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3460 -2.1 -2.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4077 -2.1 -3.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3661 -2.0 -7.4 hypothetical protein compare
Pf6N2E2_4585 -2.0 -9.0 Cell division protein FtsX compare
Pf6N2E2_5006 -2.0 -8.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2825 -2.0 -5.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5843 -2.0 -2.9 hypothetical protein compare
Pf6N2E2_2473 -2.0 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_3617 -2.0 -6.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_43 -1.9 -5.8 Histidine permease YuiF compare
Pf6N2E2_5544 -1.9 -6.8 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2022 -1.9 -5.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5171 -1.9 -13.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_4556 -1.9 -4.4 FIG00953078: hypothetical protein compare
Pf6N2E2_3833 -1.9 -4.3 hypothetical protein compare
Pf6N2E2_1636 -1.9 -8.4 Ferrichrome-iron receptor compare
Pf6N2E2_3373 -1.9 -3.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4584 -1.8 -3.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5150 -1.8 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2753 -1.8 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_3261 -1.8 -5.1 hypothetical protein compare
Pf6N2E2_2509 -1.8 -3.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2746 -1.7 -5.8 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_4362 -1.7 -3.6 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_75 -1.7 -4.1 Colicin V production protein compare
Pf6N2E2_3761 -1.6 -12.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2756 -1.6 -6.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4369 -1.6 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3351 -1.6 -4.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4451 -1.6 -5.9 FIG139438: lipoprotein B compare
Pf6N2E2_3062 -1.5 -5.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2992 -1.5 -3.3 Regulatory protein RecX compare
Pf6N2E2_5609 -1.5 -5.8 DNA-binding response regulator ColR compare
Pf6N2E2_2474 -1.5 -7.4 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1635 -1.5 -4.5 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_5406 -1.5 -3.1 FIG00958224: hypothetical protein compare
Pf6N2E2_4579 -1.5 -2.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4273 -1.5 -6.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4142 -1.4 -9.9 membrane protein, putative compare
Pf6N2E2_4418 -1.4 -1.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3264 -1.4 -2.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5219 -1.4 -6.0 FIG140336: TPR domain protein compare
Pf6N2E2_3665 -1.4 -1.1 serine/threonine protein kinase compare
Pf6N2E2_2325 -1.4 -5.1 Recombination protein RecR compare
Pf6N2E2_2752 -1.4 -6.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4888 -1.4 -10.2 Excinuclease ABC subunit A compare
Pf6N2E2_3941 -1.3 -2.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2010 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_2433 -1.3 -5.5 Probable transmembrane protein compare
Pf6N2E2_3664 -1.3 -6.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3792 -1.3 -5.4 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5342 -1.3 -2.1 21 kDa hemolysin precursor compare
Pf6N2E2_2824 -1.3 -7.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2021 -1.3 -5.8 Excinuclease ABC subunit C compare
Pf6N2E2_4477 -1.3 -4.2 Z-ring-associated protein ZapA compare
Pf6N2E2_3835 -1.3 -1.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5316 -1.3 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3349 -1.3 -1.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1584 -1.2 -3.7 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_2127 -1.2 -4.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3791 -1.2 -5.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3237 -1.2 -3.1 hypothetical protein compare
Pf6N2E2_5720 -1.2 -7.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5255 -1.1 -6.7 Outer membrane stress sensor protease DegS compare
Pf6N2E2_3655 -1.1 -7.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5780 -1.1 -6.1 Periplasmic protease compare
Pf6N2E2_3935 -1.1 -7.2 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_5170 -1.1 -7.9 FIG00955330: hypothetical protein compare
Pf6N2E2_2513 -1.1 -2.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2869 -1.1 -1.8 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_52 -1.1 -7.5 Excinuclease ABC subunit B compare
Pf6N2E2_447 -1.1 -4.5 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_4372 -1.1 -3.7 FIG00460773: hypothetical protein compare
Pf6N2E2_1634 -1.1 -3.6 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2827 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_3607 -1.1 -5.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3303 -1.1 -3.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_953 -1.1 -1.2 FIG00958851: hypothetical protein compare
Pf6N2E2_3095 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_5428 -1.0 -4.6 DNA recombination and repair protein RecO compare
Pf6N2E2_5133 -1.0 -2.4 FIG00953980: hypothetical protein compare
Pf6N2E2_2217 -1.0 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4153 -1.0 -1.7 Sensory box histidine kinase compare
Pf6N2E2_1074 -1.0 -2.2 FIG00953356: hypothetical protein compare
Pf6N2E2_2675 -1.0 -1.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4773 -1.0 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1932 -1.0 -4.5 Transcriptional regulator, IclR family compare
Pf6N2E2_4415 -1.0 -2.1 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5130 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_445 -1.0 -3.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1981 -1.0 -3.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2823 -0.9 -2.4 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2549 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5579 -0.9 -4.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4072 -0.9 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3656 -0.9 -4.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_4453 -0.9 -7.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4673 -0.9 -3.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_2969 -0.9 -5.5 Peptide chain release factor RF-3 compare
Pf6N2E2_2550 -0.9 -7.0 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily compare
Pf6N2E2_3198 -0.9 -1.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3908 -0.9 -4.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5508 -0.9 -1.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4733 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2674 -0.9 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_4197 -0.9 -4.3 DNA recombination and repair protein RecF compare
Pf6N2E2_237 -0.8 -3.0 hypothetical protein compare
Pf6N2E2_3140 -0.8 -3.0 FIG00953680: hypothetical protein compare
Pf6N2E2_1396 -0.8 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_238 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_5245 -0.8 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5633 -0.8 -6.3 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4044 -0.8 -2.9 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_904 -0.8 -2.8 hypothetical protein compare
Pf6N2E2_5632 -0.8 -2.8 Aromatic amino acid transport protein AroP compare
Pf6N2E2_1617 -0.8 -1.1 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2329 -0.8 -4.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf6N2E2_4691 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4165 -0.8 -3.7 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_288 -0.8 -1.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_1792 -0.8 -2.3 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_1920 -0.8 -2.0 Rubredoxin compare
Pf6N2E2_946 -0.8 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_4074 -0.8 -5.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_74 -0.8 -0.9 DedD protein compare
Pf6N2E2_2188 -0.8 -2.2 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_1009 -0.8 -1.4 Inositol transport system permease protein compare
Pf6N2E2_2646 -0.8 -0.6 FIG00953416: hypothetical protein compare
Pf6N2E2_4474 -0.8 -4.3 FIG006231: RNA-binding protein compare
Pf6N2E2_2072 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_5069 -0.7 -3.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3560 -0.7 -2.8 membrane protein, putative compare
Pf6N2E2_4710 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_216 -0.7 -2.5 Copper-sensing two-component system response regulator CpxR compare
Pf6N2E2_2219 -0.7 -1.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4594 -0.7 -1.8 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_5345 -0.7 -4.0 LppC putative lipoprotein compare
Pf6N2E2_2340 -0.7 -3.3 Transcriptional regulator, GntR family compare
Pf6N2E2_1199 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_4057 -0.7 -0.8 lipoprotein, putative compare
Pf6N2E2_4307 -0.7 -2.0 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2063 -0.7 -2.0 Predicted cobalt transporter CbtA compare
Pf6N2E2_3696 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_5086 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_1632 -0.7 -2.9 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_3191 -0.7 -3.2 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_242 -0.7 -3.2 Glycine betaine ABC transport system permease protein compare
Pf6N2E2_3899 -0.7 -4.2 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_4168 -0.7 -3.8 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_5506 -0.7 -3.5 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_3711 -0.7 -4.2 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf6N2E2_1040 -0.7 -1.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1747 -0.7 -1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_822 -0.7 -3.8 TPR domain protein compare
Pf6N2E2_282 -0.7 -1.3 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5155 -0.7 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_865 -0.7 -1.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3305 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_3727 -0.7 -1.6 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_2128 -0.7 -2.8 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_441 -0.7 -2.0 FIG00958773: hypothetical protein compare
Pf6N2E2_2176 -0.7 -1.0 Amidases related to nicotinamidase compare
Pf6N2E2_4367 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_2984 -0.7 -1.4 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3637 -0.7 -3.6 yqiA-like hydrolase, affects the cell envelope (from data) compare
Pf6N2E2_2472 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_1758 -0.6 -1.3 Transcriptional regulator, MarR family compare
Pf6N2E2_1673 -0.6 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3328 -0.6 -1.6 transcriptional regulator compare
Pf6N2E2_5346 -0.6 -2.1 rRNA small subunit methyltransferase I compare
Pf6N2E2_442 -0.6 -1.7 FIG00962345: hypothetical protein compare
Pf6N2E2_2448 -0.6 -2.6 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_3370 -0.6 -4.4 DNA repair protein RecN compare
Pf6N2E2_490 -0.6 -1.3 PhaK-like protein compare
Pf6N2E2_704 -0.6 -1.4 Cytochrome c551/c552 compare
Pf6N2E2_3687 -0.6 -1.6 FIG00959437: hypothetical protein compare
Pf6N2E2_122 -0.6 -1.4 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare


Specific Phenotypes

For 6 genes in this experiment

For stress Calcium chloride dihydrate in Pseudomonas fluorescens FW300-N2E2

For stress Calcium chloride dihydrate across organisms