Experiment set7IT037 for Methanococcus maripaludis S2

Compare to:

control, 1x iron with casamino acids and vitamins, formate media

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.8 9.2 acetate--CoA ligase family protein compare
MMP_RS06540 +1.1 3.3 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS08455 +1.0 5.4 multiprotein bridging factor aMBF1 compare
MMP_RS06770 +1.0 4.7 DHH family phosphoesterase compare
MMP_RS06575 +1.0 5.2 fluoride efflux transporter CrcB compare
MMP_RS01525 +0.9 2.6 nucleoside-diphosphate kinase compare
MMP_RS07815 +0.9 1.7 DUF2120 domain-containing protein compare
MMP_RS07415 +0.9 4.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS08275 +0.9 4.6 hypothetical protein compare
MMP_RS09025 +0.9 1.4 hypothetical protein compare
MMP_RS07555 +0.9 0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS07125 +0.9 4.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00750 +0.8 1.7 fumarate hydratase compare
MMP_RS00450 +0.8 1.7 4Fe-4S binding protein compare
MMP_RS08350 +0.8 1.1 hypothetical protein compare
MMP_RS08365 +0.7 3.9 energy conserving hydrogenase EhbF compare
MMP_RS02310 +0.7 1.7 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS07130 +0.7 3.8 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS00395 +0.7 1.5 MGMT family protein compare
MMP_RS05535 +0.7 2.5 hypothetical protein compare
MMP_RS06545 +0.6 3.1 ferredoxin family protein compare
MMP_RS05315 +0.6 1.8 hypothetical protein compare
MMP_RS07805 +0.6 3.0 ABC transporter permease compare
MMP_RS03465 +0.6 1.1 adenine phosphoribosyltransferase compare
MMP_RS06155 +0.6 2.6 DUF4186 domain-containing protein compare
MMP_RS05675 +0.6 1.6 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS06325 +0.6 1.2 hypothetical protein compare
MMP_RS06290 +0.6 2.3 DNA repair and recombination protein RadA compare
MMP_RS01620 +0.6 2.9 hypothetical protein compare
MMP_RS06860 +0.6 1.3 4Fe-4S binding protein compare
MMP_RS00660 +0.6 4.0 alkaline phosphatase family protein compare
MMP_RS07120 +0.5 3.6 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS06570 +0.5 1.5 DUF190 domain-containing protein compare
MMP_RS08555 +0.5 1.8 hypothetical protein compare
MMP_RS00105 +0.5 4.0 hypothetical protein compare
MMP_RS08485 +0.5 3.0 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS06900 +0.5 1.0 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07850 +0.5 2.1 prephenate dehydratase compare
MMP_RS06530 +0.5 2.8 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS07835 +0.5 2.1 TldD/PmbA family protein compare
MMP_RS08370 +0.5 0.5 cation:proton antiporter subunit C compare
MMP_RS08265 +0.5 2.1 rubrerythrin compare
MMP_RS00385 +0.5 2.7 P-II family nitrogen regulator compare
MMP_RS07955 +0.5 2.1 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS03150 +0.5 3.7 phosphoglycerate mutase compare
MMP_RS02895 +0.5 3.2 DHH family phosphoesterase compare
MMP_RS08775 +0.5 2.8 methanogenesis marker 9 domain-containing protein compare
MMP_RS01100 +0.5 1.1 ABC transporter ATP-binding protein compare
MMP_RS01660 +0.5 1.3 hypothetical protein compare
MMP_RS08335 +0.5 3.2 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS07620 +0.5 1.6 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS00185 +0.5 3.6 potassium channel protein compare
MMP_RS01775 +0.5 1.3 TIGR00297 family protein compare
MMP_RS06520 +0.4 3.1 DUF1786 domain-containing protein compare
MMP_RS06315 +0.4 0.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00880 +0.4 2.1 ribosome assembly RNA-binding protein YhbY compare
MMP_RS07725 +0.4 1.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS05450 +0.4 2.1 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS00375 +0.4 2.7 ammonium transporter compare
MMP_RS08640 +0.4 2.9 TIM barrel protein compare
MMP_RS03490 +0.4 1.1 DUF2115 domain-containing protein compare
MMP_RS05110 +0.4 2.4 16S ribosomal RNA methyltransferase A compare
MMP_RS05720 +0.4 1.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS07925 +0.4 2.3 haloacid dehalogenase compare
MMP_RS01460 +0.4 1.9 hypothetical protein compare
MMP_RS07800 +0.4 2.1 ATP-binding cassette domain-containing protein compare
MMP_RS08360 +0.4 2.1 hypothetical protein compare
MMP_RS01580 +0.4 2.5 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS06550 +0.4 2.1 AMP-binding protein compare
MMP_RS01650 +0.4 0.5 sulfurtransferase TusA family protein compare
MMP_RS05995 +0.4 2.8 FprA family A-type flavoprotein compare
MMP_RS02770 +0.4 1.3 hypothetical protein compare
MMP_RS08405 +0.4 2.6 MFS transporter compare
MMP_RS06515 +0.4 1.2 UPF0489 family protein compare
MMP_RS01685 +0.4 1.2 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01030 +0.4 1.5 MTAP family purine nucleoside phosphorylase compare
MMP_RS00650 +0.4 2.4 ABC transporter ATP-binding protein compare
MMP_RS06745 +0.4 2.2 DUF2119 domain-containing protein compare
MMP_RS07540 +0.4 1.2 CBS domain-containing protein compare
MMP_RS06555 +0.4 1.5 cupin domain-containing protein compare
MMP_RS00155 +0.4 2.3 heavy metal-binding domain-containing protein compare
MMP_RS08345 +0.4 2.4 4Fe-4S binding protein compare
MMP_RS07615 +0.4 2.0 energy-coupling factor ABC transporter permease compare
MMP_RS08760 +0.4 0.9 hypothetical protein compare
MMP_RS01540 +0.4 1.4 DUF504 domain-containing protein compare
MMP_RS08990 +0.4 1.9 hypothetical protein compare
MMP_RS00940 +0.4 2.4 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS08160 +0.4 1.9 EamA family transporter compare
MMP_RS07970 +0.4 1.1 hypothetical protein compare
MMP_RS08325 +0.4 2.7 hypothetical protein compare
MMP_RS02265 +0.3 1.3 nitroreductase family protein compare
MMP_RS00085 +0.3 2.3 DNA cytosine methyltransferase compare
MMP_RS02720 +0.3 1.7 molybdate ABC transporter substrate-binding protein compare
MMP_RS02815 +0.3 1.3 hypothetical protein compare
MMP_RS07915 +0.3 2.0 DUF4870 domain-containing protein compare
MMP_RS02290 +0.3 2.1 MBL fold metallo-hydrolase compare
MMP_RS03320 +0.3 1.0 metal-dependent transcriptional regulator compare
MMP_RS02985 +0.3 0.7 hypothetical protein compare
MMP_RS09030 +0.3 1.8 hypothetical protein compare
MMP_RS08280 +0.3 1.3 proteasome assembly chaperone family protein compare
MMP_RS03395 +0.3 1.4 hypothetical protein compare
MMP_RS08340 +0.3 1.4 4Fe-4S binding protein compare
MMP_RS05505 +0.3 2.3 class IV adenylate cyclase compare
MMP_RS00950 +0.3 1.5 site-2 protease family protein compare
MMP_RS02480 +0.3 0.9 hypothetical protein compare
MMP_RS06535 +0.3 1.2 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS02910 +0.3 2.2 ABC transporter substrate-binding protein compare
MMP_RS04740 +0.3 1.7 DUF473 domain-containing protein compare
MMP_RS01055 +0.3 1.4 hypothetical protein compare
MMP_RS05970 +0.3 0.9 class II SORL domain-containing protein compare
MMP_RS03340 +0.3 0.3 ABC transporter ATP-binding protein compare
MMP_RS07095 +0.3 1.9 PspC domain-containing protein compare
MMP_RS01200 +0.3 1.3 hypothetical protein compare
MMP_RS00635 +0.3 1.7 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS02045 +0.3 0.7 tRNA-Met compare
MMP_RS01420 +0.3 1.0 hypothetical protein compare
MMP_RS00430 +0.3 1.1 hypothetical protein compare
MMP_RS00630 +0.3 2.1 ECF transporter S component compare
MMP_RS03215 +0.3 2.2 MBL fold metallo-hydrolase compare
MMP_RS01210 +0.3 1.8 sodium:solute symporter compare
MMP_RS00325 +0.3 0.7 RNA-binding protein compare
MMP_RS02475 +0.3 1.1 hypothetical protein compare
MMP_RS06000 +0.3 1.6 divalent-cation tolerance protein CutA compare
MMP_RS05850 +0.3 0.7 Ldh family oxidoreductase compare
MMP_RS08430 +0.3 1.2 HAD family hydrolase compare
MMP_RS09050 +0.3 0.9 CAP domain-containing protein compare
MMP_RS05950 +0.3 1.5 nickel-dependent hydrogenase large subunit compare
MMP_RS03875 +0.3 1.1 hypothetical protein compare
MMP_RS05150 +0.3 1.6 hypothetical protein compare
MMP_RS07410 +0.3 1.6 4-demethylwyosine synthase TYW1 compare
MMP_RS07910 +0.3 1.2 NAD(P)H-hydrate dehydratase compare
MMP_RS02705 +0.3 1.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02380 +0.3 1.6 ATP-binding protein compare
MMP_RS08380 +0.3 1.6 phosphatase PAP2 family protein compare
MMP_RS00795 +0.3 1.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07770 +0.3 1.1 alanine racemase compare
MMP_RS03420 +0.3 1.1 acetolactate synthase small subunit compare
MMP_RS01115 +0.3 1.6 molybdopterin molybdotransferase MoeA compare
MMP_RS07135 +0.2 1.4 coenzyme F420 hydrogenase subunit beta compare
MMP_RS03675 +0.2 2.0 RimK family alpha-L-glutamate ligase compare
MMP_RS05295 +0.2 1.6 minichromosome maintenance protein MCM compare
MMP_RS02880 +0.2 1.8 AmmeMemoRadiSam system radical SAM enzyme compare
MMP_RS08470 +0.2 1.4 ATP-binding cassette domain-containing protein compare
MMP_RS02915 +0.2 1.3 amino acid ABC transporter permease compare
MMP_RS01130 +0.2 1.4 flavoprotein compare
MMP_RS06015 +0.2 1.1 flavodoxin family protein compare
MMP_RS00400 +0.2 1.6 tributyrin esterase compare
MMP_RS08315 +0.2 1.3 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS02970 +0.2 1.7 hypothetical protein compare
MMP_RS01635 +0.2 1.3 thiamine pyrophosphate-dependent enzyme compare
MMP_RS05470 +0.2 1.7 DUF523 and DUF1722 domain-containing protein compare
MMP_RS07890 +0.2 0.7 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08575 +0.2 1.9 hypothetical protein compare
MMP_RS08310 +0.2 0.7 TMEM165/GDT1 family protein compare
MMP_RS08410 +0.2 0.8 DUF169 domain-containing protein compare
MMP_RS09035 +0.2 1.0 hypothetical protein compare
MMP_RS05990 +0.2 1.0 DsrE family protein compare
MMP_RS01435 +0.2 1.5 DMT family transporter compare
MMP_RS02510 +0.2 1.5 site-specific integrase compare
MMP_RS08500 +0.2 1.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS00100 +0.2 1.8 tRNA pseudouridine(13) synthase TruD compare
MMP_RS06320 +0.2 0.9 hypothetical protein compare
MMP_RS00145 +0.2 1.5 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS07820 +0.2 1.1 UPF0104 family protein compare
MMP_RS08480 +0.2 1.8 molybdate ABC transporter substrate-binding protein compare
MMP_RS04970 +0.2 1.7 F420-dependent thioredoxin reductase compare
MMP_RS03770 +0.2 1.5 hydroxylamine reductase compare
MMP_RS06910 +0.2 1.4 RlmF-related methyltransferase compare
MMP_RS04325 +0.2 1.5 MtaA/CmuA family methyltransferase compare
MMP_RS03065 +0.2 0.7 AzlC family ABC transporter permease compare
MMP_RS01950 +0.2 1.6 hypothetical protein compare
MMP_RS08755 +0.2 2.0 sodium:solute symporter family protein compare
MMP_RS08085 +0.2 1.5 hypothetical protein compare
MMP_RS08705 +0.2 1.1 sulfopyruvate decarboxylase subunit beta compare
MMP_RS05715 +0.2 1.1 hypothetical protein compare
MMP_RS01155 +0.2 1.3 XRE family transcriptional regulator compare
MMP_RS02300 +0.2 1.1 NAD(P)H-dependent oxidoreductase compare
MMP_RS00285 +0.2 1.4 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS06500 +0.2 1.6 ATP-binding protein compare
MMP_RS07150 +0.2 1.3 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS08700 +0.2 1.5 hypothetical protein compare
MMP_RS01485 +0.2 1.3 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS07985 +0.2 1.5 nitroreductase family protein compare
MMP_RS03895 +0.2 0.9 hypothetical protein compare
MMP_RS00390 +0.2 1.2 ammonium transporter compare
MMP_RS08355 +0.2 1.1 Na(+)/H(+) antiporter subunit B compare
MMP_RS02745 +0.2 0.7 hypothetical protein compare
MMP_RS06045 +0.2 1.4 DNA polymerase compare
MMP_RS03460 +0.2 1.1 U32 family peptidase compare
MMP_RS02500 +0.2 1.4 minichromosome maintenance protein MCM compare
MMP_RS03615 +0.2 1.5 4Fe-4S binding protein compare
MMP_RS00665 +0.2 0.8 hypothetical protein compare
MMP_RS03995 +0.2 1.8 flippase-like domain-containing protein compare
MMP_RS07335 +0.2 0.9 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS06080 +0.2 1.6 radical SAM protein compare
MMP_RS02840 +0.2 1.1 DUF123 domain-containing protein compare
MMP_RS06335 +0.2 1.2 HAD family hydrolase compare
MMP_RS00480 +0.2 1.1 hypothetical protein compare
MMP_RS01765 +0.2 0.9 HIT family protein compare
MMP_RS00380 +0.2 0.9 P-II family nitrogen regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms