Experiment set7IT037 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Malonic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01632 +2.0 15.2 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_04391 +1.9 10.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02008 +1.7 8.2 phosphocarrier protein compare
H281DRAFT_04390 +1.7 10.9 ATP-binding cassette, subfamily B compare
H281DRAFT_06081 +1.6 1.4 ubiquitin-hydrolase Zn-finger-containing protein compare
H281DRAFT_00757 +1.6 1.8 hypothetical protein compare
H281DRAFT_01633 +1.6 2.9 hypothetical protein compare
H281DRAFT_06037 +1.5 1.5 molybdate transport system substrate-binding protein compare
H281DRAFT_01108 +1.5 2.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00405 +1.5 1.8 Predicted small secreted protein compare
H281DRAFT_06322 +1.5 3.9 LPS-assembly lipoprotein compare
H281DRAFT_04179 +1.4 9.1 two-component system, OmpR family, sensor kinase compare
H281DRAFT_00469 +1.4 2.9 phasin family protein compare
H281DRAFT_03297 +1.3 1.7 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_04858 +1.3 1.4 hypothetical protein compare
H281DRAFT_03266 +1.2 1.3 Nicotinamidase-related amidase compare
H281DRAFT_04406 +1.2 1.9 putative RNA-binding protein, YhbY family compare
H281DRAFT_05888 +1.2 3.8 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01148 +1.2 1.9 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_01042 +1.2 2.4 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_04369 +1.2 3.2 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_04676 +1.2 2.5 hypothetical protein compare
H281DRAFT_00298 +1.2 3.1 hypothetical protein compare
H281DRAFT_02856 +1.1 1.8 Protein of unknown function (DUF1488) compare
H281DRAFT_04792 +1.1 3.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00853 +1.1 2.0 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_04857 +1.1 2.0 hypothetical protein compare
H281DRAFT_03201 +1.1 1.3 transcriptional regulator, XRE family compare
H281DRAFT_06175 +1.1 1.6 DNA repair exonuclease compare
H281DRAFT_06056 +1.1 7.1 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_02718 +1.1 1.2 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_06238 +1.1 1.5 hypothetical protein compare
H281DRAFT_02683 +1.1 1.4 xanthine dehydrogenase accessory factor compare
H281DRAFT_00998 +1.1 1.8 outer membrane protein, multidrug efflux system compare
H281DRAFT_04473 +1.1 2.0 methyl-accepting chemotaxis protein compare
H281DRAFT_03118 +1.1 1.8 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_05961 +1.1 1.4 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_05632 +1.1 2.0 hypothetical protein compare
H281DRAFT_01071 +1.1 1.3 muconolactone delta-isomerase (EC 5.3.3.4) compare
H281DRAFT_04515 +1.1 2.0 RNAse G compare
H281DRAFT_03611 +1.0 1.3 hopanoid-associated phosphorylase compare
H281DRAFT_03299 +1.0 2.0 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_00996 +1.0 1.6 ChrR Cupin-like domain-containing protein compare
H281DRAFT_01584 +1.0 1.4 enamidase compare
H281DRAFT_04899 +1.0 3.1 microcin C transport system ATP-binding protein compare
H281DRAFT_01443 +1.0 0.8 RND family efflux transporter, MFP subunit compare
H281DRAFT_06500 +1.0 1.5 Lactate dehydrogenase compare
H281DRAFT_00240 +1.0 5.9 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05286 +1.0 1.6 transcriptional regulator, LysR family compare
H281DRAFT_06296 +1.0 2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04946 +1.0 3.2 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_01681 +1.0 1.4 Acyl dehydratase compare
H281DRAFT_01033 +1.0 1.3 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06285 +1.0 2.1 3-dehydroquinate dehydratase compare
H281DRAFT_03240 +1.0 3.0 pyruvate dehydrogenase (quinone) compare
H281DRAFT_05778 +1.0 1.6 flagellar motor switch protein FliN/FliY compare
H281DRAFT_03577 +1.0 2.6 hypothetical protein compare
H281DRAFT_01190 +1.0 1.7 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_04773 +0.9 1.8 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05768 +0.9 2.8 flagellar L-ring protein precursor FlgH compare
H281DRAFT_00920 +0.9 2.7 transcriptional regulator, GntR family compare
H281DRAFT_01974 +0.9 1.7 Lipid A 3-O-deacylase (PagL) compare
H281DRAFT_06276 +0.9 4.9 hypothetical protein compare
H281DRAFT_04150 +0.9 2.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03258 +0.9 1.8 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit (EC 4.1.1.68) compare
H281DRAFT_01028 +0.9 1.0 peptide/nickel transport system permease protein compare
H281DRAFT_06308 +0.9 1.9 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_02695 +0.9 2.1 transcriptional regulator, HxlR family compare
H281DRAFT_02734 +0.9 3.0 YXWGXW repeat-containing protein compare
H281DRAFT_05774 +0.9 2.9 flagellar biosynthetic protein FliR compare
H281DRAFT_00854 +0.9 3.8 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_01011 +0.9 1.0 Uncharacterized membrane protein YkgB compare
H281DRAFT_05769 +0.9 4.8 flagellar P-ring protein precursor FlgI compare
H281DRAFT_00465 +0.9 2.1 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_04880 +0.9 2.4 PRC-barrel domain-containing protein compare
H281DRAFT_06344 +0.9 2.8 transcriptional regulator, LysR family compare
H281DRAFT_04611 +0.9 1.0 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_05561 +0.9 4.2 transcriptional regulator, TetR family compare
H281DRAFT_01541 +0.9 1.9 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_02720 +0.9 1.8 GAF domain-containing protein compare
H281DRAFT_05438 +0.9 1.5 transcriptional regulator, IclR family compare
H281DRAFT_06096 +0.9 4.4 amino acid/amide ABC transporter substrate-binding protein, HAAT family compare
H281DRAFT_05963 +0.8 3.0 transcriptional regulator, IclR family compare
H281DRAFT_05770 +0.8 5.2 flagellar protein FlgJ compare
H281DRAFT_04470 +0.8 2.2 adenosylhomocysteine nucleosidase compare
H281DRAFT_01512 +0.8 1.0 transcriptional regulator, IclR family compare
H281DRAFT_06385 +0.8 1.3 hypothetical protein compare
H281DRAFT_04115 +0.8 4.6 Regulator of sirC expression, contains transglutaminase-like and TPR domains compare
H281DRAFT_05079 +0.8 2.2 small conductance mechanosensitive channel compare
H281DRAFT_03108 +0.8 1.2 hypothetical protein compare
H281DRAFT_05756 +0.8 1.7 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05065 +0.8 1.9 Putative SOS response-associated peptidase YedK compare
H281DRAFT_06074 +0.8 1.2 entericidin A compare
H281DRAFT_03574 +0.8 2.9 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03739 +0.8 2.0 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_03221 +0.8 1.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03905 +0.8 2.5 D-methionine transport system permease protein compare
H281DRAFT_01464 +0.8 1.7 Anti-sigma-K factor RskA compare
H281DRAFT_03237 +0.8 1.8 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
H281DRAFT_00733 +0.8 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01786 +0.8 2.5 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_01178 +0.8 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05646 +0.8 1.4 hypothetical protein compare
H281DRAFT_02662 +0.8 1.1 Predicted xylanase/chitin deacetylase compare
H281DRAFT_04683 +0.8 4.5 glycolate oxidase compare
H281DRAFT_02292 +0.8 1.1 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_06070 +0.8 2.1 FimV C-terminal domain-containing protein compare
H281DRAFT_04153 +0.8 2.2 xylulokinase compare
H281DRAFT_04774 +0.8 2.2 polysaccharide export outer membrane protein compare
H281DRAFT_05983 +0.8 0.7 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01509 +0.8 1.0 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_06367 +0.8 1.1 pilus assembly protein CpaE compare
H281DRAFT_06581 +0.8 2.0 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_05314 +0.8 0.7 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_02588 +0.8 3.0 PRC-barrel domain-containing protein compare
H281DRAFT_00390 +0.8 1.1 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_01619 +0.8 2.4 hypothetical protein compare
H281DRAFT_00752 +0.8 1.8 hypothetical protein compare
H281DRAFT_02595 +0.8 2.0 transcriptional regulator, GntR family compare
H281DRAFT_05766 +0.8 1.0 flagellar basal-body rod protein FlgF compare
H281DRAFT_01284 +0.8 1.7 transcriptional regulator, LysR family compare
H281DRAFT_03328 +0.8 1.3 hypothetical protein compare
H281DRAFT_00261 +0.8 1.4 Rubredoxin compare
H281DRAFT_03871 +0.8 3.2 hypothetical protein compare
H281DRAFT_01784 +0.8 2.1 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_03324 +0.8 1.0 Low affinity Fe/Cu permease compare
H281DRAFT_00719 +0.8 2.0 polysaccharide export outer membrane protein compare
H281DRAFT_01931 +0.8 2.6 UPF0042 nucleotide-binding protein compare
H281DRAFT_05705 +0.8 1.3 hypothetical protein compare
H281DRAFT_00989 +0.8 1.7 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_03849 +0.7 2.0 protein of unknown function (DUF4863) compare
H281DRAFT_06083 +0.7 0.8 heat shock protein Hsp20 compare
H281DRAFT_02692 +0.7 1.3 nudix-type nucleoside diphosphatase, YffH/AdpP family compare
H281DRAFT_05781 +0.7 3.2 flagellar hook-length control protein FliK compare
H281DRAFT_03610 +0.7 1.6 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_01046 +0.7 1.4 aliphatic nitrilase compare
H281DRAFT_05123 +0.7 1.0 hypothetical protein compare
H281DRAFT_05336 +0.7 2.0 transcriptional regulator, MerR family compare
H281DRAFT_01862 +0.7 2.1 Outer membrane protein (porin) compare
H281DRAFT_05885 +0.7 1.3 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_04869 +0.7 0.6 imidazolonepropionase compare
H281DRAFT_06025 +0.7 1.9 chromate transporter compare
H281DRAFT_00668 +0.7 2.1 tagaturonate reductase compare
H281DRAFT_02183 +0.7 1.7 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_00236 +0.7 2.6 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_01069 +0.7 0.6 Cytosine/adenosine deaminase compare
H281DRAFT_03820 +0.7 0.9 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_00595 +0.7 2.8 cardiolipin synthase compare
H281DRAFT_01878 +0.7 1.7 membrane fusion protein, multidrug efflux system compare
H281DRAFT_03293 +0.7 2.2 Ferritin-like metal-binding protein YciE compare
H281DRAFT_00022 +0.7 1.6 Transposase IS66 family protein compare
H281DRAFT_01476 +0.7 2.0 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_04993 +0.7 1.2 hypothetical protein compare
H281DRAFT_03390 +0.7 2.0 H+/Cl- antiporter ClcA compare
H281DRAFT_00103 +0.7 2.8 transcriptional regulator, LacI family compare
H281DRAFT_06422 +0.7 1.1 hypothetical protein compare
H281DRAFT_01721 +0.7 0.7 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_05910 +0.7 0.9 hypothetical protein compare
H281DRAFT_03282 +0.7 0.9 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_04302 +0.7 1.1 molybdopterin adenylyltransferase compare
H281DRAFT_03094 +0.7 0.7 transcriptional regulator, MarR family compare
H281DRAFT_05765 +0.7 4.5 flagellar hook protein FlgE compare
H281DRAFT_05080 +0.7 1.8 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily compare
H281DRAFT_02520 +0.7 1.4 Ribosomal protein S18 acetylase RimI compare
H281DRAFT_01580 +0.7 1.5 hypothetical protein compare
H281DRAFT_04400 +0.7 4.9 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_00706 +0.7 0.6 outer membrane protein compare
H281DRAFT_02717 +0.7 1.8 hypothetical protein compare
H281DRAFT_05902 +0.7 1.2 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_00073 +0.7 1.2 hypothetical protein compare
H281DRAFT_06008 +0.7 3.0 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_03023 +0.7 0.9 Protein of unknown function (DUF2866) compare
H281DRAFT_01520 +0.7 2.1 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_06437 +0.7 1.1 FdhD protein compare
H281DRAFT_00267 +0.7 2.0 chromate transporter compare
H281DRAFT_03220 +0.7 1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00717 +0.7 1.2 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_03486 +0.7 1.8 osmoprotectant transport system permease protein compare
H281DRAFT_02007 +0.7 5.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_00272 +0.7 2.0 Glyoxalase-like domain-containing protein compare
H281DRAFT_03815 +0.7 1.2 D-glucarate dehydratase compare
H281DRAFT_06445 +0.7 0.8 Molybdopterin synthase catalytic subunit compare
H281DRAFT_02178 +0.7 3.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_03009 +0.7 1.6 acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein compare
H281DRAFT_04164 +0.7 2.0 zinc/manganese transport system permease protein compare
H281DRAFT_01746 +0.7 1.1 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_01399 +0.7 1.1 arsenite efflux membrane protein ArsB compare
H281DRAFT_06194 +0.7 1.2 Proteolipid membrane potential modulator compare
H281DRAFT_05642 +0.7 2.3 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_03242 +0.7 2.8 Predicted dithiol-disulfide isomerase, DsbA family compare
H281DRAFT_06090 +0.7 2.1 N-ethylmaleimide reductase compare
H281DRAFT_01240 +0.7 2.1 hypothetical protein compare
H281DRAFT_01075 +0.7 1.0 benzoate 1,2-dioxygenase, alpha subunit compare
H281DRAFT_00293 +0.7 1.8 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III compare
H281DRAFT_06341 +0.7 1.7 glyoxylate/hydroxypyruvate reductase A compare
H281DRAFT_03473 +0.7 2.5 hypothetical protein compare
H281DRAFT_03576 +0.7 1.2 two-component system, chemotaxis family, response regulator CheY compare
H281DRAFT_01908 +0.7 1.5 Cytochrome c553 compare
H281DRAFT_04008 +0.7 1.2 RNAse PH compare
H281DRAFT_05060 +0.7 1.2 Permeases of the drug/metabolite transporter (DMT) superfamily compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Malonic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Malonic acid across organisms