Experiment set7IT036 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Calcium chloride dihydrate 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.9 -5.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -5.2 -2.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_773 -4.6 -8.9 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_4353 -4.1 -7.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3461 -4.0 -2.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5001 -3.9 -2.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2507 -3.9 -8.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2508 -3.9 -6.4 hypothetical protein compare
Pf6N2E2_4352 -3.7 -4.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5527 -3.5 -3.4 Cold shock protein CspC compare
Pf6N2E2_144 -3.3 -15.8 Uncharacterized protein YtfM precursor compare
Pf6N2E2_145 -3.2 -8.4 putative exported protein compare
Pf6N2E2_4162 -3.1 -4.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4908 -3.1 -7.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2510 -2.9 -5.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4579 -2.9 -3.9 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3264 -2.6 -2.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3611 -2.6 -1.8 HflC protein compare
Pf6N2E2_4071 -2.6 -4.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_75 -2.5 -3.3 Colicin V production protein compare
Pf6N2E2_2506 -2.5 -14.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4611 -2.5 -4.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5544 -2.2 -7.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4451 -2.2 -6.3 FIG139438: lipoprotein B compare
Pf6N2E2_2756 -2.2 -8.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4584 -2.2 -3.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4585 -2.2 -10.9 Cell division protein FtsX compare
Pf6N2E2_4416 -2.2 -3.8 Tyrosine recombinase XerC compare
Pf6N2E2_4886 -2.1 -9.7 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3460 -2.1 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3373 -2.1 -3.9 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3833 -2.1 -4.0 hypothetical protein compare
Pf6N2E2_5150 -2.1 -5.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3060 -2.1 -3.3 Outer membrane protein H precursor compare
Pf6N2E2_3658 -2.0 -6.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3617 -1.9 -4.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5705 -1.9 -2.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3834 -1.9 -5.5 Lipoprotein NlpD compare
Pf6N2E2_2752 -1.9 -8.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4362 -1.9 -3.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4072 -1.9 -5.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_43 -1.8 -5.8 Histidine permease YuiF compare
Pf6N2E2_2022 -1.8 -4.9 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5006 -1.8 -6.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2514 -1.8 -4.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2503 -1.8 -2.2 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_3761 -1.8 -12.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3261 -1.7 -4.4 hypothetical protein compare
Pf6N2E2_178 -1.7 -1.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3349 -1.7 -3.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2509 -1.7 -1.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5609 -1.7 -6.6 DNA-binding response regulator ColR compare
Pf6N2E2_5252 -1.7 -2.5 FIG00956396: hypothetical protein compare
Pf6N2E2_5219 -1.7 -7.8 FIG140336: TPR domain protein compare
Pf6N2E2_5171 -1.6 -10.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_2825 -1.6 -4.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3661 -1.6 -5.2 hypothetical protein compare
Pf6N2E2_74 -1.6 -2.1 DedD protein compare
Pf6N2E2_3835 -1.6 -4.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2753 -1.6 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_3351 -1.5 -4.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4888 -1.5 -11.5 Excinuclease ABC subunit A compare
Pf6N2E2_4273 -1.5 -5.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4204 -1.5 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2746 -1.5 -3.8 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5316 -1.4 -2.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4993 -1.4 -2.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3303 -1.4 -3.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2217 -1.4 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5103 -1.4 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_827 -1.4 -2.4 probable dioxygenase compare
Pf6N2E2_4075 -1.3 -3.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3791 -1.3 -6.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2674 -1.3 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_2309 -1.3 -3.4 hypothetical protein compare
Pf6N2E2_2513 -1.3 -3.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3664 -1.3 -5.7 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4077 -1.3 -2.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5720 -1.3 -7.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5780 -1.2 -6.1 Periplasmic protease compare
Pf6N2E2_445 -1.2 -4.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2325 -1.2 -3.6 Recombination protein RecR compare
Pf6N2E2_1636 -1.2 -6.5 Ferrichrome-iron receptor compare
Pf6N2E2_2474 -1.2 -5.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_500 -1.2 -3.1 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_2824 -1.2 -6.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3171 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_5155 -1.2 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3885 -1.2 -2.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2128 -1.2 -4.0 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2021 -1.1 -4.6 Excinuclease ABC subunit C compare
Pf6N2E2_1169 -1.1 -2.5 TnpR protein compare
Pf6N2E2_3635 -1.1 -1.9 FIG00953138: hypothetical protein compare
Pf6N2E2_1824 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_4556 -1.1 -1.9 FIG00953078: hypothetical protein compare
Pf6N2E2_5406 -1.1 -2.4 FIG00958224: hypothetical protein compare
Pf6N2E2_4197 -1.1 -6.0 DNA recombination and repair protein RecF compare
Pf6N2E2_413 -1.1 -1.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_384 -1.1 -1.6 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4142 -1.1 -6.4 membrane protein, putative compare
Pf6N2E2_440 -1.1 -2.0 FIG00954920: hypothetical protein compare
Pf6N2E2_3655 -1.1 -6.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4372 -1.1 -3.5 FIG00460773: hypothetical protein compare
Pf6N2E2_5862 -1.1 -1.4 Lipoprotein, putative compare
Pf6N2E2_3792 -1.1 -3.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3607 -1.1 -4.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5170 -1.1 -7.9 FIG00955330: hypothetical protein compare
Pf6N2E2_3282 -1.1 -1.7 FIG005080: Possible exported protein compare
Pf6N2E2_4479 -1.0 -1.6 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_1634 -1.0 -2.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2127 -1.0 -3.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_52 -1.0 -7.1 Excinuclease ABC subunit B compare
Pf6N2E2_3727 -1.0 -1.6 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_2480 -1.0 -1.3 FIG00957636: hypothetical protein compare
Pf6N2E2_579 -1.0 -1.2 FIG00962753: hypothetical protein compare
Pf6N2E2_3714 -1.0 -4.2 FIG017861: hypothetical protein compare
Pf6N2E2_3665 -1.0 -0.8 serine/threonine protein kinase compare
Pf6N2E2_4057 -1.0 -0.9 lipoprotein, putative compare
Pf6N2E2_5843 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_6058 -1.0 -3.8 FIG139976: hypothetical protein compare
Pf6N2E2_6085 -1.0 -1.2 Aha1 domain superfamily compare
Pf6N2E2_2473 -1.0 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_5727 -0.9 -3.5 FIG00955360: hypothetical protein compare
Pf6N2E2_443 -0.9 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3899 -0.9 -4.7 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5342 -0.9 -1.8 21 kDa hemolysin precursor compare
Pf6N2E2_2823 -0.9 -3.4 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2973 -0.9 -3.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3370 -0.9 -6.0 DNA repair protein RecN compare
Pf6N2E2_5633 -0.9 -6.9 Aromatic amino acid transport protein AroP compare
Pf6N2E2_1606 -0.9 -3.6 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_16 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_1652 -0.9 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3612 -0.9 -1.7 HflK protein compare
Pf6N2E2_3941 -0.9 -1.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5632 -0.9 -2.6 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2106 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_6164 -0.8 -1.1 tRNA-Val-TAC compare
Pf6N2E2_3062 -0.8 -2.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4797 -0.8 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4453 -0.8 -6.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1176 -0.8 -2.1 Mll2356 protein compare
Pf6N2E2_447 -0.8 -2.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_453 -0.8 -2.3 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_1319 -0.8 -2.3 FIG074102: hypothetical protein compare
Pf6N2E2_4367 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_4160 -0.8 -0.9 Cytochrome c5 compare
Pf6N2E2_613 -0.8 -1.1 lipoprotein, putative compare
Pf6N2E2_4074 -0.8 -6.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2969 -0.8 -5.0 Peptide chain release factor RF-3 compare
Pf6N2E2_1635 -0.8 -2.2 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2962 -0.8 -2.2 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_5255 -0.8 -5.2 Outer membrane stress sensor protease DegS compare
Pf6N2E2_3717 -0.8 -2.8 Lysophospholipid acyltransferase compare
Pf6N2E2_5245 -0.8 -4.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2827 -0.8 -0.7 hypothetical protein compare
Pf6N2E2_5775 -0.8 -1.6 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_3346 -0.8 -2.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_718 -0.8 -2.2 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_5428 -0.8 -2.9 DNA recombination and repair protein RecO compare
Pf6N2E2_1157 -0.8 -2.1 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_3935 -0.8 -5.1 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_4369 -0.8 -1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1460 -0.8 -2.7 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_2831 -0.7 -2.9 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Pf6N2E2_2792 -0.7 -2.7 Antitoxin 1 compare
Pf6N2E2_4477 -0.7 -1.6 Z-ring-associated protein ZapA compare
Pf6N2E2_968 -0.7 -2.7 FIG00962395: hypothetical protein compare
Pf6N2E2_902 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_818 -0.7 -3.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_1522 -0.7 -2.1 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_5505 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_5747 -0.7 -2.1 Two-component response regulator compare
Pf6N2E2_64 -0.7 -2.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4517 -0.7 -2.3 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5804 -0.7 -2.8 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Pf6N2E2_1136 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_4996 -0.7 -1.2 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_2992 -0.7 -2.5 Regulatory protein RecX compare
Pf6N2E2_5610 -0.7 -3.1 two-component system sensor protein compare
Pf6N2E2_482 -0.7 -1.1 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_1886 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_3849 -0.7 -1.3 FIG00954739: hypothetical protein compare
Pf6N2E2_1665 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_1283 -0.7 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1776 -0.7 -1.3 Chemotaxis protein CheD compare
Pf6N2E2_5579 -0.7 -3.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2152 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_2985 -0.7 -2.3 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_234 -0.7 -1.8 FIG00454312: hypothetical protein compare
Pf6N2E2_198 -0.7 -3.3 hypothetical protein compare
Pf6N2E2_2855 -0.7 -2.8 DGPFAETKE compare
Pf6N2E2_155 -0.7 -1.5 Probable transmembrane protein compare
Pf6N2E2_4364 -0.7 -1.1 Protein YicC compare
Pf6N2E2_1435 -0.7 -1.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1162 -0.7 -1.1 Transmembrane amino acid efflux protein compare
Pf6N2E2_1981 -0.7 -2.4 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3637 -0.6 -4.0 yqiA-like hydrolase, affects the cell envelope (from data) compare
Pf6N2E2_5337 -0.6 -2.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3300 -0.6 -1.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare


Specific Phenotypes

For 3 genes in this experiment

For stress Calcium chloride dihydrate in Pseudomonas fluorescens FW300-N2E2

For stress Calcium chloride dihydrate across organisms