Experiment set7IT036 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.2 -4.3 Tol-Pal system protein TolB compare
IAI47_00760 -5.6 -3.8 envelope stress response regulator transcription factor CpxR compare
IAI47_13700 -4.9 -3.4 Tol-Pal system protein TolQ compare
IAI47_15635 -4.7 -3.2 RNA polymerase-binding protein DksA compare
IAI47_10845 -4.6 -3.2 major outer membrane lipoprotein compare
IAI47_17965 -4.6 -18.4 glucose-6-phosphate isomerase compare
IAI47_09040 -4.4 -2.6 NAD-dependent epimerase compare
IAI47_17000 -4.2 -11.8 lipoprotein NlpI compare
IAI47_18480 -4.0 -15.4 lipid III flippase WzxE compare
IAI47_13415 -4.0 -18.2 L,D-transpeptidase family protein compare
IAI47_08085 -3.8 -2.6 helix-turn-helix domain-containing protein compare
IAI47_12275 -3.6 -14.4 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_10835 -3.6 -1.3 tRNA-Val compare
IAI47_12280 -3.5 -9.4 glucan biosynthesis protein G compare
IAI47_09580 -3.5 -3.4 FNR family transcription factor compare
IAI47_19945 -3.4 -1.2 hypothetical protein compare
IAI47_14075 -3.4 -3.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_05155 -3.3 -17.2 polyphosphate kinase 1 compare
IAI47_08700 -3.2 -3.9 RNA chaperone ProQ compare
IAI47_08705 -3.1 -2.2 carboxy terminal-processing peptidase compare
IAI47_16085 -3.1 -2.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_15970 -3.0 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_00780 -3.0 -2.9 6-phosphofructokinase compare
IAI47_12470 -3.0 -15.4 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_13695 -3.0 -1.0 colicin uptake protein TolR compare
IAI47_00655 -2.9 -4.1 glycosyltransferase family 4 protein compare
IAI47_18215 -2.8 -2.4 Trk system potassium transporter TrkH compare
IAI47_09055 -2.8 -10.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_17155 -2.7 -12.4 calcium/sodium antiporter compare
IAI47_18470 -2.7 -13.1 ECA oligosaccharide polymerase compare
IAI47_07020 -2.6 -1.8 hypothetical protein compare
IAI47_07030 -2.6 -6.5 HAD family hydrolase compare
IAI47_13885 -2.5 -2.4 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_13690 -2.5 -0.8 cell envelope integrity protein TolA compare
IAI47_04300 -2.4 -6.2 recombinase RecA compare
IAI47_21765 -2.4 -2.8 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_07025 -2.3 -6.4 glycosyltransferase family 4 protein compare
IAI47_15485 -2.3 -1.4 molecular chaperone Skp compare
IAI47_11415 -2.3 -1.6 hypothetical protein compare
IAI47_12880 -2.3 -15.6 formate C-acetyltransferase compare
IAI47_04110 -2.3 -17.9 two-component sensor histidine kinase BarA compare
IAI47_05070 -2.3 -0.8 outer membrane protein assembly factor BamB compare
IAI47_12885 -2.2 -8.6 pyruvate formate lyase 1-activating protein compare
IAI47_06245 -2.2 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_20595 -2.2 -4.4 GhoT/OrtT family toxin compare
IAI47_08445 -2.2 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_18830 -2.1 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_10320 -2.1 -1.0 Rrf2 family transcriptional regulator compare
IAI47_14325 -2.1 -1.6 ribosome-associated protein YbcJ compare
IAI47_03550 -2.1 -11.8 membrane-bound lytic murein transglycosylase MltC compare
IAI47_18055 -2.1 -4.2 DNA-binding protein HU-alpha compare
IAI47_08105 -2.1 -2.5 DinI family protein compare
IAI47_18400 -2.1 -2.0 tyrosine recombinase XerC compare
IAI47_00670 -2.0 -13.5 sugar glycosyltransferase compare
IAI47_07480 -2.0 -1.8 hypothetical protein compare
IAI47_12930 -2.0 -3.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_03640 -1.9 -11.1 glycosyltransferase compare
IAI47_08605 -1.9 -2.9 hypothetical protein compare
IAI47_11375 -1.9 -1.7 hypothetical protein compare
IAI47_00940 -1.9 -9.5 HTH-type transcriptional repressor FabR compare
IAI47_13720 -1.9 -4.4 cytochrome d ubiquinol oxidase subunit II compare
IAI47_00465 -1.9 -2.2 ribosome-dependent GTPase TypA compare
IAI47_16520 -1.9 -10.6 hypothetical protein compare
IAI47_03375 -1.9 -8.0 peptide chain release factor 3 compare
IAI47_07165 -1.9 -1.3 exodeoxyribonuclease I compare
IAI47_17005 -1.9 -4.7 polyribonucleotide nucleotidyltransferase compare
IAI47_06565 -1.8 -2.0 YejL family protein compare
IAI47_00675 -1.8 -11.2 glycosyltransferase family 9 protein compare
IAI47_01475 -1.8 -8.8 MurR/RpiR family transcriptional regulator compare
IAI47_07350 -1.8 -0.9 hypothetical protein compare
IAI47_16995 -1.8 -2.3 protein YrbN compare
IAI47_07515 -1.8 -4.0 hypothetical protein compare
IAI47_03820 -1.7 -2.8 site-specific tyrosine recombinase XerD compare
IAI47_03645 -1.7 -10.5 O-antigen ligase family protein compare
IAI47_13625 -1.7 -6.9 CDF family zinc transporter ZitB compare
IAI47_21595 -1.6 -7.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_10840 -1.6 -2.2 pyruvate kinase PykF compare
IAI47_00500 -1.6 -9.9 ATP-dependent DNA helicase RecG compare
IAI47_09235 -1.6 -1.4 type I DNA topoisomerase compare
IAI47_21600 -1.6 -3.3 EamA family transporter compare
IAI47_00300 -1.5 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_00430 -1.5 -10.9 DNA polymerase I compare
IAI47_15155 -1.5 -3.1 DUF943 family protein compare
IAI47_08450 -1.5 -2.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05035 -1.5 -2.5 nucleoside-diphosphate kinase compare
IAI47_13725 -1.5 -4.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_09360 -1.5 -1.0 peptide ABC transporter ATP-binding protein SapF compare
IAI47_16420 -1.5 -9.2 LacI family DNA-binding transcriptional regulator compare
IAI47_06450 -1.5 -3.4 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_18520 -1.5 -10.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_01000 -1.4 -9.3 HTH-type transcriptional regulator HdfR compare
IAI47_11630 -1.4 -2.5 hypothetical protein compare
IAI47_12925 -1.4 -3.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_17165 -1.4 -7.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_12865 -1.4 -7.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00110 -1.4 -5.1 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_08680 -1.4 -5.6 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_02090 -1.4 -3.0 elongation factor Tu compare
IAI47_00540 -1.4 -3.7 hypothetical protein compare
IAI47_07180 -1.4 -3.3 DUF496 family protein compare
IAI47_07525 -1.3 -2.1 conjugal transfer protein TraD compare
IAI47_21780 -1.3 -2.7 hypothetical protein compare
IAI47_12565 -1.3 -7.7 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_02260 -1.3 -4.9 Zn(2+)-responsive transcriptional regulator compare
IAI47_06915 -1.3 -7.1 outer membrane assembly protein AsmA compare
IAI47_09750 -1.3 -5.2 ROK family transcriptional regulator compare
IAI47_17020 -1.3 -2.1 30S ribosome-binding factor RbfA compare
IAI47_00835 -1.3 -2.1 cell division protein ZapB compare
IAI47_10430 -1.3 -1.6 hypothetical protein compare
IAI47_08855 -1.3 -4.0 septum site-determining protein MinC compare
IAI47_02380 -1.3 -1.9 DNA-binding transcriptional regulator Fis compare
IAI47_14940 -1.3 -1.9 YaiI/YqxD family protein compare
IAI47_00870 -1.3 -0.8 50S ribosomal protein L31 compare
IAI47_08440 -1.2 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_11995 -1.2 -4.6 beta-N-acetylhexosaminidase compare
IAI47_12645 -1.2 -3.2 porin OmpA compare
IAI47_16595 -1.2 -3.3 DUF4102 domain-containing protein compare
IAI47_06135 -1.2 -2.8 phosphohistidine phosphatase SixA compare
IAI47_09305 -1.2 -2.4 cyclic di-GMP phosphodiesterase compare
IAI47_01545 -1.2 -5.1 cell division ATP-binding protein FtsE compare
IAI47_04120 -1.2 -8.4 GTP diphosphokinase compare
IAI47_01005 -1.2 -7.8 DUF413 domain-containing protein compare
IAI47_05090 -1.2 -2.8 hypothetical protein compare
IAI47_11445 -1.2 -4.0 ankyrin repeat domain-containing protein compare
IAI47_08065 -1.2 -3.8 acyltransferase compare
IAI47_07005 -1.2 -2.7 glycosyltransferase family 4 protein compare
IAI47_03680 -1.1 -6.3 transketolase compare
IAI47_00735 -1.1 -1.5 protein-export chaperone SecB compare
IAI47_16195 -1.1 -6.3 transaldolase compare
IAI47_18410 -1.1 -2.8 diaminopimelate epimerase compare
IAI47_00505 -1.1 -4.7 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_06235 -1.1 -3.9 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_17235 -1.1 -5.8 stringent starvation protein A compare
IAI47_08670 -1.1 -1.8 DUF1272 domain-containing protein compare
IAI47_04865 -1.1 -1.8 SoxR-reducing system protein RseC compare
IAI47_11480 -1.1 -1.2 hypothetical protein compare
IAI47_16080 -1.1 -5.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_21610 -1.1 -5.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI47_02585 -1.1 -3.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_07450 -1.1 -1.9 winged helix-turn-helix domain-containing protein compare
IAI47_10670 -1.1 -4.0 SDR family oxidoreductase compare
IAI47_09855 -1.1 -2.8 DUF2384 domain-containing protein compare
IAI47_17185 -1.1 -4.7 RNA polymerase factor sigma-54 compare
IAI47_11420 -1.1 -1.4 hypothetical protein compare
IAI47_18840 -1.1 -1.9 membrane protein insertion efficiency factor YidD compare
IAI47_15540 -1.1 -5.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_01350 -1.1 -6.9 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
IAI47_12260 -1.1 -3.2 hypothetical protein compare
IAI47_03590 -1.0 -4.2 YggT family protein compare
IAI47_02990 -1.0 -5.5 hypothetical protein compare
IAI47_21450 -1.0 -0.9 general stress protein compare
IAI47_01355 -1.0 -4.2 universal stress protein UspA compare
IAI47_03615 -1.0 -4.6 glutathione synthase compare
IAI47_04830 -1.0 -3.4 autonomous glycyl radical cofactor GrcA compare
IAI47_04805 -1.0 -3.5 outer membrane protein assembly factor BamE compare
IAI47_11360 -1.0 -1.8 hypothetical protein compare
IAI47_11625 -1.0 -1.4 DUF1311 domain-containing protein compare
IAI47_02685 -1.0 -3.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_06675 -1.0 -1.9 DUF1232 domain-containing protein compare
IAI47_17255 -1.0 -1.9 DUF1043 family protein compare
IAI47_04775 -1.0 -2.2 SIR2 family protein compare
IAI47_19825 -1.0 -4.1 EAL domain-containing protein compare
IAI47_14210 -1.0 -3.1 hypothetical protein compare
IAI47_12655 -1.0 -5.9 Lon protease family protein compare
IAI47_14295 -0.9 -2.1 hypothetical protein compare
IAI47_14205 -0.9 -3.7 hypothetical protein compare
IAI47_13050 -0.9 -2.8 YbjN domain-containing protein compare
IAI47_07000 -0.9 -4.7 UDP-glucose 4-epimerase GalE compare
IAI47_10545 -0.9 -1.7 hypothetical protein compare
IAI47_09835 -0.9 -3.9 FAD-dependent urate hydroxylase HpxO compare
IAI47_02255 -0.9 -5.7 DUF1992 domain-containing protein compare
IAI47_21545 -0.9 -5.4 SgcJ/EcaC family oxidoreductase compare
IAI47_03725 -0.9 -4.0 phosphoglycerate dehydrogenase compare
IAI47_05755 -0.9 -2.3 hypothetical protein compare
IAI47_15430 -0.9 -4.7 cytochrome c compare
IAI47_07530 -0.9 -3.3 type III restriction-modification system endonuclease compare
IAI47_18015 -0.9 -6.4 homoserine O-succinyltransferase compare
IAI47_02625 -0.9 -6.8 ribonuclease R compare
IAI47_04335 -0.9 -1.4 tRNA-Arg compare
IAI47_12665 -0.9 -2.2 ribosome modulation factor compare
IAI47_00375 -0.9 -6.3 ribose operon transcriptional repressor RbsR compare
IAI47_01650 -0.9 -5.1 gluconate operon transcriptional repressor GntR compare
IAI47_18705 -0.9 -4.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_08410 -0.9 -2.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
IAI47_04545 -0.8 -2.5 glutaredoxin-like protein NrdH compare
IAI47_20440 -0.8 -2.3 SDR family oxidoreductase compare
IAI47_15595 -0.8 -1.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_14230 -0.8 -3.9 DotU family type IV/VI secretion system protein compare
IAI47_18495 -0.8 -4.0 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_06030 -0.8 -2.5 hypothetical protein compare
IAI47_14590 -0.8 -6.1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
IAI47_05660 -0.8 -4.2 serine protease compare
IAI47_01325 -0.8 -6.7 glutathione-disulfide reductase compare
IAI47_13950 -0.8 -0.7 PhoH family protein compare
IAI47_09635 -0.8 -2.4 hypothetical protein compare
IAI47_12270 -0.8 -3.4 YceK/YidQ family lipoprotein compare
IAI47_17645 -0.8 -1.7 hypothetical protein compare
IAI47_01345 -0.8 -5.5 oligopeptidase A compare
IAI47_05895 -0.8 -2.1 hypothetical protein compare
IAI47_04465 -0.8 -6.4 MFS transporter compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms