Experiment set7IT035 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.2 -4.2 Tol-Pal system protein TolB compare
IAI47_10845 -4.7 -3.2 major outer membrane lipoprotein compare
IAI47_04800 -4.5 -1.6 RnfH family protein compare
IAI47_09040 -4.4 -2.6 NAD-dependent epimerase compare
IAI47_00655 -4.3 -5.5 glycosyltransferase family 4 protein compare
IAI47_17000 -4.2 -11.4 lipoprotein NlpI compare
IAI47_17965 -4.2 -18.8 glucose-6-phosphate isomerase compare
IAI47_18480 -3.9 -14.2 lipid III flippase WzxE compare
IAI47_13700 -3.7 -5.6 Tol-Pal system protein TolQ compare
IAI47_10835 -3.7 -1.3 tRNA-Val compare
IAI47_08085 -3.6 -3.5 helix-turn-helix domain-containing protein compare
IAI47_08700 -3.6 -2.5 RNA chaperone ProQ compare
IAI47_13415 -3.5 -15.2 L,D-transpeptidase family protein compare
IAI47_16390 -3.4 -1.2 tRNA-Leu compare
IAI47_12275 -3.4 -14.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_14075 -3.3 -3.2 transcription antiterminator/RNA stability regulator CspE compare
IAI47_12280 -3.2 -9.9 glucan biosynthesis protein G compare
IAI47_15635 -3.1 -2.8 RNA polymerase-binding protein DksA compare
IAI47_07905 -3.0 -1.0 Arc family DNA-binding protein compare
IAI47_13695 -3.0 -1.0 colicin uptake protein TolR compare
IAI47_08705 -3.0 -4.9 carboxy terminal-processing peptidase compare
IAI47_00760 -2.9 -4.4 envelope stress response regulator transcription factor CpxR compare
IAI47_05155 -2.8 -17.4 polyphosphate kinase 1 compare
IAI47_00780 -2.8 -3.8 6-phosphofructokinase compare
IAI47_12470 -2.8 -13.4 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_13950 -2.7 -1.8 PhoH family protein compare
IAI47_12930 -2.7 -3.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_09055 -2.7 -11.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_17155 -2.6 -13.1 calcium/sodium antiporter compare
IAI47_12880 -2.6 -16.5 formate C-acetyltransferase compare
IAI47_18830 -2.5 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13625 -2.5 -9.2 CDF family zinc transporter ZitB compare
IAI47_12885 -2.5 -9.2 pyruvate formate lyase 1-activating protein compare
IAI47_13690 -2.4 -0.8 cell envelope integrity protein TolA compare
IAI47_18470 -2.4 -12.8 ECA oligosaccharide polymerase compare
IAI47_15485 -2.3 -1.3 molecular chaperone Skp compare
IAI47_05070 -2.3 -0.8 outer membrane protein assembly factor BamB compare
IAI47_08445 -2.2 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_00300 -2.2 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_18055 -2.1 -7.5 DNA-binding protein HU-alpha compare
IAI47_05090 -2.1 -4.4 hypothetical protein compare
IAI47_04110 -2.1 -15.9 two-component sensor histidine kinase BarA compare
IAI47_07025 -2.1 -4.7 glycosyltransferase family 4 protein compare
IAI47_21765 -2.0 -2.3 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_05035 -2.0 -3.0 nucleoside-diphosphate kinase compare
IAI47_08450 -2.0 -2.3 Holliday junction branch migration DNA helicase RuvB compare
IAI47_00465 -1.9 -2.3 ribosome-dependent GTPase TypA compare
IAI47_17005 -1.9 -4.5 polyribonucleotide nucleotidyltransferase compare
IAI47_08440 -1.9 -1.7 crossover junction endodeoxyribonuclease RuvC compare
IAI47_21595 -1.8 -9.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_01000 -1.8 -12.6 HTH-type transcriptional regulator HdfR compare
IAI47_04865 -1.8 -2.1 SoxR-reducing system protein RseC compare
IAI47_03550 -1.8 -11.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_09235 -1.8 -1.4 type I DNA topoisomerase compare
IAI47_16995 -1.7 -1.9 protein YrbN compare
IAI47_01475 -1.7 -6.0 MurR/RpiR family transcriptional regulator compare
IAI47_03820 -1.7 -2.8 site-specific tyrosine recombinase XerD compare
IAI47_12925 -1.7 -3.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_07020 -1.7 -1.4 hypothetical protein compare
IAI47_00940 -1.6 -7.7 HTH-type transcriptional repressor FabR compare
IAI47_00675 -1.6 -11.1 glycosyltransferase family 9 protein compare
IAI47_07490 -1.6 -2.2 DNA-binding protein compare
IAI47_03640 -1.6 -9.3 glycosyltransferase compare
IAI47_17285 -1.6 -2.9 entericidin A/B family lipoprotein compare
IAI47_10840 -1.6 -2.1 pyruvate kinase PykF compare
IAI47_18415 -1.6 -3.9 lipoprotein compare
IAI47_09305 -1.6 -3.3 cyclic di-GMP phosphodiesterase compare
IAI47_11995 -1.6 -4.4 beta-N-acetylhexosaminidase compare
IAI47_00770 -1.6 -0.9 general stress protein compare
IAI47_10545 -1.5 -2.4 hypothetical protein compare
IAI47_00670 -1.5 -10.6 sugar glycosyltransferase compare
IAI47_17215 -1.5 -1.2 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_15970 -1.5 -1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_06235 -1.5 -5.6 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_07010 -1.5 -2.4 ABC transporter permease compare
IAI47_18215 -1.5 -1.8 Trk system potassium transporter TrkH compare
IAI47_14730 -1.5 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_04895 -1.5 -2.9 pyridoxine 5'-phosphate synthase compare
IAI47_12865 -1.5 -7.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07030 -1.4 -5.5 HAD family hydrolase compare
IAI47_03725 -1.4 -7.1 phosphoglycerate dehydrogenase compare
IAI47_12305 -1.4 -6.4 hypothetical protein compare
IAI47_11450 -1.4 -3.5 ankyrin repeat domain-containing protein compare
IAI47_16420 -1.4 -8.0 LacI family DNA-binding transcriptional regulator compare
IAI47_20595 -1.4 -3.4 GhoT/OrtT family toxin compare
IAI47_03645 -1.4 -8.5 O-antigen ligase family protein compare
IAI47_06135 -1.4 -2.9 phosphohistidine phosphatase SixA compare
IAI47_00505 -1.4 -5.7 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_11515 -1.4 -1.1 hypothetical protein compare
IAI47_03615 -1.4 -6.2 glutathione synthase compare
IAI47_17235 -1.4 -8.0 stringent starvation protein A compare
IAI47_07180 -1.3 -5.1 DUF496 family protein compare
IAI47_18410 -1.3 -4.0 diaminopimelate epimerase compare
IAI47_04300 -1.3 -5.3 recombinase RecA compare
IAI47_17560 -1.3 -1.4 ROK family transcriptional regulator compare
IAI47_18520 -1.3 -8.3 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_07470 -1.3 -1.7 AlpA family transcriptional regulator compare
IAI47_18400 -1.3 -1.9 tyrosine recombinase XerC compare
IAI47_00500 -1.3 -7.7 ATP-dependent DNA helicase RecG compare
IAI47_03375 -1.3 -6.8 peptide chain release factor 3 compare
IAI47_03680 -1.3 -7.2 transketolase compare
IAI47_12645 -1.2 -2.9 porin OmpA compare
IAI47_03590 -1.2 -5.8 YggT family protein compare
IAI47_07475 -1.2 -0.8 hypothetical protein compare
IAI47_02260 -1.2 -4.0 Zn(2+)-responsive transcriptional regulator compare
IAI47_18705 -1.2 -7.4 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_06915 -1.2 -6.7 outer membrane assembly protein AsmA compare
IAI47_00870 -1.2 -0.7 50S ribosomal protein L31 compare
IAI47_04705 -1.2 -0.8 hypothetical protein compare
IAI47_01005 -1.2 -7.3 DUF413 domain-containing protein compare
IAI47_13725 -1.2 -2.9 cytochrome ubiquinol oxidase subunit I compare
IAI47_12565 -1.2 -7.4 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_10925 -1.2 -2.3 EAL domain-containing protein compare
IAI47_16560 -1.2 -4.7 hypothetical protein compare
IAI47_10340 -1.1 -4.1 mannose-6-phosphate isomerase compare
IAI47_04120 -1.1 -7.2 GTP diphosphokinase compare
IAI47_21600 -1.1 -2.1 EamA family transporter compare
IAI47_02255 -1.1 -6.5 DUF1992 domain-containing protein compare
IAI47_11200 -1.1 -2.4 DotU family type IV/VI secretion system protein compare
IAI47_16085 -1.1 -1.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_00375 -1.1 -7.5 ribose operon transcriptional repressor RbsR compare
IAI47_18015 -1.1 -8.0 homoserine O-succinyltransferase compare
IAI47_05850 -1.1 -2.5 NinF family protein compare
IAI47_07005 -1.1 -2.4 glycosyltransferase family 4 protein compare
IAI47_12655 -1.1 -6.9 Lon protease family protein compare
IAI47_13720 -1.1 -3.2 cytochrome d ubiquinol oxidase subunit II compare
IAI47_17165 -1.1 -5.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_14325 -1.1 -1.5 ribosome-associated protein YbcJ compare
IAI47_16080 -1.1 -5.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_16195 -1.1 -5.5 transaldolase compare
IAI47_00110 -1.0 -3.4 glyoxylate/hydroxypyruvate reductase GhrB compare
IAI47_00850 -1.0 -5.5 ATP-dependent protease subunit HslV compare
IAI47_20600 -1.0 -1.2 hypothetical protein compare
IAI47_16350 -1.0 -4.4 phosphoserine phosphatase compare
IAI47_01355 -1.0 -4.5 universal stress protein UspA compare
IAI47_09750 -1.0 -4.3 ROK family transcriptional regulator compare
IAI47_16520 -1.0 -5.1 hypothetical protein compare
IAI47_00445 -1.0 -5.9 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_01180 -1.0 -1.2 prolyl oligopeptidase family serine peptidase compare
IAI47_07530 -1.0 -3.6 type III restriction-modification system endonuclease compare
IAI47_03585 -1.0 -2.9 XTP/dITP diphosphatase compare
IAI47_10520 -1.0 -1.6 pyridoxamine 5'-phosphate oxidase compare
IAI47_10590 -1.0 -2.9 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_05745 -1.0 -1.2 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_15540 -1.0 -5.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_11535 -1.0 -1.4 DcrB-related protein compare
IAI47_02695 -1.0 -5.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_05425 -1.0 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_10565 -0.9 -1.1 DUF4113 domain-containing protein compare
IAI47_10575 -0.9 -2.2 hypothetical protein compare
IAI47_14930 -0.9 -2.1 shikimate kinase AroL compare
IAI47_05755 -0.9 -2.4 hypothetical protein compare
IAI47_04690 -0.9 -4.6 hypothetical protein compare
IAI47_11500 -0.9 -1.4 type VI secretion system tip protein VgrG compare
IAI47_11655 -0.9 -1.6 hypothetical protein compare
IAI47_01530 -0.9 -3.5 DUF1145 family protein compare
IAI47_02045 -0.9 -3.8 SlyX family protein compare
IAI47_09635 -0.9 -2.6 hypothetical protein compare
IAI47_05580 -0.9 -1.0 membrane protein YpdK compare
IAI47_19945 -0.9 -0.5 hypothetical protein compare
IAI47_07515 -0.9 -2.1 hypothetical protein compare
IAI47_21665 -0.9 -1.1 DUF333 domain-containing protein compare
IAI47_04350 -0.9 -6.5 glutamate--cysteine ligase compare
IAI47_17790 -0.9 -4.1 transposase compare
IAI47_14070 -0.9 -3.0 GNAT family N-acetyltransferase compare
IAI47_11510 -0.9 -2.8 hypothetical protein compare
IAI47_16410 -0.9 -2.9 YbaK/EbsC family protein compare
IAI47_13050 -0.9 -1.4 YbjN domain-containing protein compare
IAI47_01345 -0.8 -6.4 oligopeptidase A compare
IAI47_11760 -0.8 -0.8 TonB-dependent siderophore receptor compare
IAI47_15880 -0.8 -1.7 DNA gyrase inhibitor YacG compare
IAI47_17020 -0.8 -1.8 30S ribosome-binding factor RbfA compare
IAI47_09580 -0.8 -1.0 FNR family transcription factor compare
IAI47_05845 -0.8 -3.8 hypothetical protein compare
IAI47_07330 -0.8 -4.2 hypothetical protein compare
IAI47_04830 -0.8 -2.3 autonomous glycyl radical cofactor GrcA compare
IAI47_01325 -0.8 -6.4 glutathione-disulfide reductase compare
IAI47_20480 -0.8 -3.2 YfiR family protein compare
IAI47_04715 -0.8 -5.4 integrase compare
IAI47_01825 -0.8 -5.2 two-component system sensor histidine kinase EnvZ compare
IAI47_09895 -0.8 -2.4 GNAT family N-acetyltransferase compare
IAI47_20680 -0.8 -2.3 hypothetical protein compare
IAI47_11770 -0.8 -3.0 flagellar brake protein compare
IAI47_04465 -0.8 -6.2 MFS transporter compare
IAI47_12605 -0.8 -4.6 CoA-binding protein compare
IAI47_12265 -0.8 -3.5 secY/secA suppressor protein compare
IAI47_02625 -0.8 -5.9 ribonuclease R compare
IAI47_19675 -0.8 -1.1 ParD-like family protein compare
IAI47_14595 -0.8 -5.2 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_17860 -0.8 -2.8 envelope stress response protein PspG compare
IAI47_01650 -0.8 -4.8 gluconate operon transcriptional repressor GntR compare
IAI47_02600 -0.8 -5.0 FtsH protease activity modulator HflK compare
IAI47_11235 -0.8 -3.6 gamma-glutamylcyclotransferase compare
IAI47_06120 -0.8 -1.4 YfcZ/YiiS family protein compare
IAI47_08355 -0.8 -1.3 flagellar protein FlhE compare
IAI47_19960 -0.8 -4.3 lipid IV(A) palmitoyltransferase PagP compare
IAI47_03195 -0.8 -1.6 cell division protein FtsP compare
IAI47_01830 -0.8 -5.1 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_10930 -0.8 -3.3 C40 family peptidase compare
IAI47_21100 -0.7 -3.3 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms