Experiment set7IT035 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +5.9 28.8 transcriptional regulator LrhA compare
IAI47_07550 +3.7 2.4 tRNA-Asn compare
IAI47_21880 +3.7 4.8 ParA family protein compare
IAI47_09550 +3.0 17.1 hypothetical protein compare
IAI47_13740 +2.9 5.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_13935 +2.8 6.4 tRNA-Gln compare
IAI47_06790 +2.8 7.9 alkyl hydroperoxide reductase subunit C compare
IAI47_06385 +2.6 10.7 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_06410 +2.6 11.5 NADH-quinone oxidoreductase subunit L compare
IAI47_06365 +2.6 8.3 NADH-quinone oxidoreductase subunit B compare
IAI47_07885 +2.6 2.3 tRNA-Asn compare
IAI47_09245 +2.5 6.2 YmiA family putative membrane protein compare
IAI47_20630 +2.5 10.6 DUF2534 family protein compare
IAI47_14680 +2.4 12.7 cytochrome o ubiquinol oxidase subunit II compare
IAI47_06370 +2.4 9.5 NADH-quinone oxidoreductase subunit C/D compare
IAI47_14700 +2.4 14.5 protoheme IX farnesyltransferase compare
IAI47_14690 +2.4 13.7 cytochrome o ubiquinol oxidase subunit III compare
IAI47_06380 +2.3 8.0 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_13745 +2.3 7.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_14685 +2.3 18.2 cytochrome o ubiquinol oxidase subunit I compare
IAI47_06405 +2.3 7.5 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_09240 +2.3 7.4 HTH-type transcriptional regulator CysB compare
IAI47_02345 +2.3 2.0 5S ribosomal RNA compare
IAI47_13755 +2.3 16.0 succinate dehydrogenase flavoprotein subunit compare
IAI47_13750 +2.3 8.9 succinate dehydrogenase iron-sulfur subunit compare
IAI47_13760 +2.3 10.1 succinate dehydrogenase membrane anchor subunit compare
IAI47_14695 +2.3 10.4 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_12570 +2.2 3.3 tRNA-Ser compare
IAI47_15810 +2.2 8.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_06400 +2.2 4.3 NADH-quinone oxidoreductase subunit J compare
IAI47_08655 +2.2 9.3 transcriptional regulator BetI compare
IAI47_20715 +2.2 9.1 helix-turn-helix transcriptional regulator compare
IAI47_17205 +2.1 4.1 PTS phosphocarrier protein NPr compare
IAI47_18595 +2.1 15.5 endoglucanase compare
IAI47_06420 +2.1 7.4 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_12060 +2.0 8.3 beta-ketoacyl-ACP synthase II compare
IAI47_14705 +1.9 9.8 MFS transporter compare
IAI47_09265 +1.9 6.4 LapA family protein compare
IAI47_06360 +1.9 3.7 NADH-quinone oxidoreductase subunit A compare
IAI47_06415 +1.9 6.5 NADH-quinone oxidoreductase subunit M compare
IAI47_20850 +1.9 5.2 TetR/AcrR family transcriptional regulator compare
IAI47_19045 +1.8 3.4 two-component-system connector protein YcgZ compare
IAI47_05130 +1.8 6.2 DNA-binding protein compare
IAI47_09395 +1.8 4.5 phage shock protein PspA compare
IAI47_13185 +1.8 8.3 outer membrane protein OmpX compare
IAI47_19875 +1.8 8.7 TetR/AcrR family transcriptional regulator compare
IAI47_13765 +1.8 5.9 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_07250 +1.7 3.8 tRNA-Asn compare
IAI47_05490 +1.7 5.5 tRNA-Val compare
IAI47_18240 +1.7 5.4 NAD(P)H-flavin reductase compare
IAI47_05525 +1.7 3.3 tRNA-Ala compare
IAI47_17050 +1.7 7.7 preprotein translocase subunit SecG compare
IAI47_09720 +1.7 7.9 TetR/AcrR family transcriptional regulator compare
IAI47_12760 +1.6 8.3 porin OmpF compare
IAI47_19710 +1.6 2.6 helix-turn-helix transcriptional regulator compare
IAI47_05435 +1.6 4.2 hypothetical protein compare
IAI47_18530 +1.6 1.3 thioredoxin TrxA compare
IAI47_21500 +1.5 6.5 H-NS histone family protein compare
IAI47_15080 +1.5 4.9 cold-shock protein compare
IAI47_06780 +1.5 9.0 iron-sulfur cluster carrier protein ApbC compare
IAI47_06390 +1.5 5.0 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_05420 +1.5 1.1 PTS glucose transporter subunit IIA compare
IAI47_04450 +1.5 1.3 tRNA-Ala compare
IAI47_05775 +1.4 5.7 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_09755 +1.4 7.2 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_13840 +1.4 4.0 replication initiation negative regulator SeqA compare
IAI47_21635 +1.4 5.8 hypothetical protein compare
IAI47_01120 +1.4 6.8 manganese efflux pump MntP compare
IAI47_20755 +1.4 6.8 methionine synthase compare
IAI47_08010 +1.4 7.8 flagella biosynthesis chaperone FliJ compare
IAI47_00120 +1.4 5.6 sugar kinase compare
IAI47_14015 +1.4 4.7 ribosome silencing factor compare
IAI47_20505 +1.3 6.2 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_19780 +1.3 5.2 TetR/AcrR family transcriptional regulator compare
IAI47_08280 +1.3 8.2 flagellar transcriptional regulator FlhD compare
IAI47_15815 +1.3 4.6 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_08015 +1.3 8.6 flagellum-specific ATP synthase FliI compare
IAI47_16135 +1.3 4.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_00515 +1.3 2.2 DNA-directed RNA polymerase subunit omega compare
IAI47_19140 +1.3 6.3 helix-turn-helix transcriptional regulator compare
IAI47_16220 +1.3 3.2 thr operon leader peptide compare
IAI47_08740 +1.3 3.2 DUF2627 domain-containing protein compare
IAI47_03290 +1.3 5.9 hypothetical protein compare
IAI47_15690 +1.3 7.1 hypoxanthine phosphoribosyltransferase compare
IAI47_08035 +1.3 2.8 flagellar hook-basal body complex protein FliE compare
IAI47_17385 +1.3 2.4 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_17900 +1.3 1.9 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_16600 +1.3 3.0 tRNA-OTHER compare
IAI47_03750 +1.3 5.6 Xaa-Pro aminopeptidase compare
IAI47_15110 +1.3 3.9 chromophore lyase compare
IAI47_21335 +1.2 2.1 RepB family plasmid replication initiator protein compare
IAI47_12085 +1.2 4.9 phosphate acyltransferase PlsX compare
IAI47_12145 +1.2 7.2 flagellar basal body rod protein FlgF compare
IAI47_10795 +1.2 6.0 HTH-type transcriptional repressor PurR compare
IAI47_18540 +1.2 5.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_07990 +1.2 4.2 flagellar motor switch protein FliN compare
IAI47_13305 +1.2 4.8 helix-turn-helix transcriptional regulator compare
IAI47_17895 +1.2 5.8 diacylglycerol kinase compare
IAI47_03765 +1.2 3.1 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_17250 +1.2 9.3 cell division protein ZapE compare
IAI47_14020 +1.2 3.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_16405 +1.2 3.2 siderophore-iron reductase FhuF compare
IAI47_01365 +1.2 2.7 inorganic phosphate transporter PitA compare
IAI47_05150 +1.2 5.9 exopolyphosphatase compare
IAI47_07995 +1.2 8.1 flagellar motor switch protein FliM compare
IAI47_08160 +1.1 7.4 RNA polymerase sigma factor FliA compare
IAI47_15140 +1.1 3.5 xanthine phosphoribosyltransferase compare
IAI47_08005 +1.1 7.8 flagellar hook-length control protein FliK compare
IAI47_15980 +1.1 9.2 catabolite repressor/activator compare
IAI47_08295 +1.1 8.6 flagellar motor protein MotB compare
IAI47_07910 +1.1 8.0 DNA (cytosine-5-)-methyltransferase compare
IAI47_13925 +1.1 1.7 tRNA-Met compare
IAI47_08285 +1.1 7.0 flagellar transcriptional regulator FlhC compare
IAI47_05770 +1.1 2.2 hypothetical protein compare
IAI47_19040 +1.1 4.1 hypothetical protein compare
IAI47_08020 +1.1 5.2 flagellar assembly protein FliH compare
IAI47_07985 +1.1 6.2 flagellar biosynthetic protein FliO compare
IAI47_20625 +1.1 3.4 DUF2946 domain-containing protein compare
IAI47_12165 +1.1 6.6 flagellar basal body rod protein FlgB compare
IAI47_12160 +1.1 6.5 flagellar basal body rod protein FlgC compare
IAI47_11175 +1.1 5.1 ABC transporter ATP-binding protein compare
IAI47_01735 +1.0 3.4 malonate decarboxylase acyl carrier protein compare
IAI47_12150 +1.0 8.3 flagellar hook protein FlgE compare
IAI47_08290 +1.0 7.8 flagellar motor stator protein MotA compare
IAI47_07890 +1.0 3.3 DgsA anti-repressor MtfA compare
IAI47_10500 +1.0 6.5 dipeptide/tripeptide permease DtpA compare
IAI47_10825 +1.0 1.6 tRNA-Val compare
IAI47_05065 +1.0 2.6 YfgM family protein compare
IAI47_17565 +1.0 2.5 N-acetylglucosamine kinase compare
IAI47_08350 +1.0 7.5 flagellar biosynthesis protein FlhA compare
IAI47_08950 +1.0 4.8 peptide-methionine (R)-S-oxide reductase MsrB compare
IAI47_08745 +1.0 1.9 transcription antiterminator/RNA stability regulator CspE compare
IAI47_16650 +1.0 3.3 hypothetical protein compare
IAI47_09325 +1.0 6.1 FdhF/YdeP family oxidoreductase compare
IAI47_10330 +1.0 3.0 DNA replication terminus site-binding protein compare
IAI47_00125 +1.0 3.8 sugar phosphate isomerase/epimerase compare
IAI47_03745 +1.0 4.5 YecA family protein compare
IAI47_05185 +1.0 3.1 uracil phosphoribosyltransferase compare
IAI47_12155 +1.0 6.9 flagellar hook assembly protein FlgD compare
IAI47_15975 +1.0 2.7 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_07540 +1.0 5.5 hypothetical protein compare
IAI47_08025 +1.0 5.4 flagellar motor switch protein FliG compare
IAI47_08345 +1.0 7.3 flagellar type III secretion system protein FlhB compare
IAI47_17710 +0.9 6.3 glutamate/aspartate:proton symporter GltP compare
IAI47_19035 +0.9 0.8 transcriptional regulator compare
IAI47_12135 +0.9 7.6 flagellar basal body L-ring protein FlgH compare
IAI47_08030 +0.9 7.4 flagellar M-ring protein FliF compare
IAI47_08340 +0.9 5.4 protein phosphatase CheZ compare
IAI47_06650 +0.9 5.6 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_00935 +0.9 4.7 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_11735 +0.9 2.0 histidinol-phosphatase compare
IAI47_12125 +0.9 6.2 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_00325 +0.9 6.4 ATPase RavA compare
IAI47_21035 +0.9 1.8 TetR/AcrR family transcriptional regulator compare
IAI47_11920 +0.9 5.7 high frequency lysogenization protein HflD compare
IAI47_07970 +0.9 5.8 flagellar type III secretion system protein FliR compare
IAI47_15460 +0.9 2.7 ribonuclease HII compare
IAI47_20760 +0.9 4.8 DUF1852 domain-containing protein compare
IAI47_00320 +0.9 6.4 ATPase RavA stimulator ViaA compare
IAI47_12130 +0.9 6.7 flagellar basal body P-ring protein FlgI compare
IAI47_05515 +0.9 5.2 formate/nitrite transporter family protein compare
IAI47_16320 +0.9 3.8 DNA-binding transcriptional repressor DeoR compare
IAI47_07975 +0.9 3.7 flagellar biosynthesis protein FliQ compare
IAI47_20940 +0.9 3.4 hypothetical protein compare
IAI47_05865 +0.8 4.2 hypothetical protein compare
IAI47_12170 +0.8 5.6 flagellar basal body P-ring formation protein FlgA compare
IAI47_15895 +0.8 1.5 secA regulator SecM compare
IAI47_02725 +0.8 3.4 gamma-glutamylcyclotransferase compare
IAI47_07980 +0.8 4.6 flagellar type III secretion system pore protein FliP compare
IAI47_08465 +0.8 4.7 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_01780 +0.8 1.8 Fe-S biogenesis protein NfuA compare
IAI47_02455 +0.8 6.0 ribonuclease G compare
IAI47_00130 +0.8 4.4 LacI family DNA-binding transcriptional regulator compare
IAI47_05195 +0.8 1.6 DnaA inactivator Hda compare
IAI47_20550 +0.8 3.4 ABC transporter permease compare
IAI47_20065 +0.8 2.2 YebG family protein compare
IAI47_09860 +0.8 2.6 RES family NAD+ phosphorylase compare
IAI47_02710 +0.8 6.1 HlyC/CorC family transporter compare
IAI47_02305 +0.8 1.5 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
IAI47_08955 +0.8 3.5 DUF1315 family protein compare
IAI47_11195 +0.8 2.7 SH3 domain-containing protein compare
IAI47_05160 +0.8 5.3 ABC transporter permease subunit compare
IAI47_09490 +0.8 3.3 DUF333 domain-containing protein compare
IAI47_05465 +0.8 3.7 bile acid:sodium symporter compare
IAI47_13570 +0.8 1.2 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_17190 +0.8 4.0 ribosome hibernation promoting factor compare
IAI47_19050 +0.8 2.1 hypothetical protein compare
IAI47_01100 +0.8 5.2 malate dehydrogenase (quinone) compare
IAI47_02350 +0.8 1.1 tRNA-Thr compare
IAI47_03740 +0.8 2.7 cell division protein ZapA compare
IAI47_08880 +0.8 4.1 fatty acid metabolism transcriptional regulator FadR compare
IAI47_10785 +0.8 5.0 C40 family peptidase compare
IAI47_11220 +0.8 3.4 serine/threonine-protein phosphatase compare
IAI47_10225 +0.8 3.1 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_06710 +0.8 2.2 LysR family transcriptional regulator compare
IAI47_08530 +0.8 2.5 copper homeostasis periplasmic binding protein CopC compare
IAI47_15735 +0.8 3.3 four-carbon acid sugar kinase family protein compare
IAI47_10470 +0.8 1.3 electron transport complex subunit E compare
IAI47_03210 +0.8 4.2 DedA family protein compare
IAI47_16045 +0.7 2.9 DedA family protein compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms